View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1422-Insertion-26 (Length: 601)

Name: NF1422-Insertion-26
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1422-Insertion-26
NF1422-Insertion-26
[»] chr1 (3 HSPs)
chr1 (8-427)||(42100173-42100592)
chr1 (463-601)||(42100929-42101068)
chr1 (199-243)||(7537047-7537091)
[»] chr4 (4 HSPs)
chr4 (39-102)||(41830594-41830657)
chr4 (199-256)||(52198331-52198388)
chr4 (213-252)||(36498654-36498693)
chr4 (199-256)||(33913930-33913989)
[»] chr8 (3 HSPs)
chr8 (208-256)||(41951176-41951224)
chr8 (185-252)||(6474020-6474087)
chr8 (199-256)||(35910561-35910620)
[»] chr5 (1 HSPs)
chr5 (213-256)||(3622253-3622296)
[»] chr2 (2 HSPs)
chr2 (208-256)||(14818700-14818748)
chr2 (217-257)||(1208617-1208657)
[»] chr7 (2 HSPs)
chr7 (185-256)||(38701558-38701629)
chr7 (51-81)||(3051906-3051936)
[»] chr6 (2 HSPs)
chr6 (193-256)||(6793471-6793534)
chr6 (211-256)||(28067307-28067352)
[»] chr3 (1 HSPs)
chr3 (213-277)||(782248-782311)


Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 8 - 427
Target Start/End: Original strand, 42100173 - 42100592
Alignment:
Q  8 ctaagcactactaaacgcgtgcattactatgtgattacaagtgttatgaatgacatttacatatgatcatccaattgcccaaagaaaaacaacaaaattg 107  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42100173 ctaagcactactaaatgcgtgcattactatgtgattacaagtgttatgaatgacatttacatatgatcatccaattgcccaaagaaaaacaacaaaattg 42100272  T
Q  108 aatatcataggttgttgcggttgtgatacggggttacacttcggtgacattgagacttaattagcaacacatttggaggtaacacttcgacgactttgag 207  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||     
T  42100273 aatatcataggttgttgcggctgtgatacggggttacacttcggtgacattgagacttaattagcaatatatttggaggtaacacttcgacgactttgaa 42100372  T
Q  208 tttgatgactttgtctctatctcgcttctaaccaataattctctctcatttaaaatacattaaagtcaccgaagacnnnnnnntacaaaatcactcgaaa 307  Q
    |||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  42100373 tttgatgactttgtttctatcttgcttctaaccaatatttctctctcatttaaaatacattaaagtcaccgaagacacaaaaatacaaaatcactcgaaa 42100472  T
Q  308 tatttccctacatttggagtgttttaactgattttccaatattttttaattgaaaaatgttacattgccgtaaaactttgatttgtcgataagacttcaa 407  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42100473 tatttccctacatttggagtgttttaaccgattttccaatattttttatttgaaaaatgttacattgccgtaaaactttgatttttcgataagacttcaa 42100572  T
Q  408 tatttacaatcactccatca 427  Q
    |||||||||| |||||||||    
T  42100573 tatttacaattactccatca 42100592  T

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Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 463 - 601
Target Start/End: Original strand, 42100929 - 42101068
Alignment:
Q  463 cctagttaattttctcattggtcatatgttttacctt-acgtttagccctaaattctctccctgttttctcttgatttatcgagcccaaagataacatgc 561  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  42100929 cctagttgattttctcattggtcatatgttttacctttacgtttagccctaaattctctccctgttttttcttgatttatcgagtccaaagataacatgc 42101028  T
Q  562 aaacagtgatctaattgtatttttcggcgttgcagctacc 601  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  42101029 aaacagtgatcttattgtattttccggcgttgcagctacc 42101068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 7537091 - 7537047
Alignment:
Q  199 gactttgagtttgatgactttgtctctatctcgcttctaaccaat 243  Q
    ||||||||||||| |||||||||||||||||| || |||||||||    
T  7537091 gactttgagtttggtgactttgtctctatctctctcctaaccaat 7537047  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 41830657 - 41830594
Alignment:
Q  39 tgattacaagtgttatgaatgacatttacatatgatcatccaattgcccaaagaaaaacaacaa 102  Q
    ||||||||||  ||||||||| ||| ||||||||||||||||| ||| ||||||||||||||||    
T  41830657 tgattacaaggcttatgaatgtcatatacatatgatcatccaagtgctcaaagaaaaacaacaa 41830594  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 52198331 - 52198388
Alignment:
Q  199 gactttgagtttgatgactttgtctctatctcgcttctaaccaataattctctctcat 256  Q
    |||||| ||||||| |||||| ||||||||||| ||||||||||||||| ||||||||    
T  52198331 gactttaagtttgacgactttatctctatctcgattctaaccaataattatctctcat 52198388  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 213 - 252
Target Start/End: Complemental strand, 36498693 - 36498654
Alignment:
Q  213 tgactttgtctctatctcgcttctaaccaataattctctc 252  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  36498693 tgactttgtctctatctctcttctaaccaataattctctc 36498654  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 33913930 - 33913989
Alignment:
Q  199 gactttgagtttgatgactttgtctcta--tctcgcttctaaccaataattctctctcat 256  Q
    ||||||| ||||||||||||||||| ||  |||| || ||||||||||||||||||||||    
T  33913930 gactttgtgtttgatgactttgtctttatctctctctcctaaccaataattctctctcat 33913989  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 41951176 - 41951224
Alignment:
Q  208 tttgatgactttgtctctatctcgcttctaaccaataattctctctcat 256  Q
    ||||||||||||||||||||||| || |||| |||||||||||||||||    
T  41951176 tttgatgactttgtctctatctctctcctaatcaataattctctctcat 41951224  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 6474087 - 6474020
Alignment:
Q  185 ggtaacacttcgacgactttgagtttgatgactttgtctctatctcgcttctaaccaataattctctc 252  Q
    ||||||||||||  ||||||||||||| ||| ||||||| |||||| |||||||| ||||||| ||||    
T  6474087 ggtaacacttcggtgactttgagtttggtgattttgtctatatctctcttctaactaataattatctc 6474020  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 35910561 - 35910620
Alignment:
Q  199 gactttgagtttgatgactttgtctcta--tctcgcttctaaccaataattctctctcat 256  Q
    ||||||| ||||||||||||||||| ||  |||| || |||||||||||||| |||||||    
T  35910561 gactttgtgtttgatgactttgtctttatctctctctcctaaccaataattccctctcat 35910620  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 213 - 256
Target Start/End: Complemental strand, 3622296 - 3622253
Alignment:
Q  213 tgactttgtctctatctcgcttctaaccaataattctctctcat 256  Q
    |||||||||||||||||| |||||||||||||||| ||||||||    
T  3622296 tgactttgtctctatctctcttctaaccaataattttctctcat 3622253  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 14818700 - 14818748
Alignment:
Q  208 tttgatgactttgtctctatctcgcttctaaccaataattctctctcat 256  Q
    |||| |||||||||||||||||| ||  |||||||||||||||||||||    
T  14818700 tttggtgactttgtctctatctctctcataaccaataattctctctcat 14818748  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 1208617 - 1208657
Alignment:
Q  217 tttgtctctatctcgcttctaaccaataattctctctcatt 257  Q
    |||||||||||||| ||  ||||||||||||||||||||||    
T  1208617 tttgtctctatctctctcttaaccaataattctctctcatt 1208657  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 256
Target Start/End: Complemental strand, 38701629 - 38701558
Alignment:
Q  185 ggtaacacttcgacgactttgagtttgatgactttgtctctatctcgcttctaaccaataattctctctcat 256  Q
    |||||||||| || ||  |||| |||| ||||||||| ||||| || |||||||||||||||||||| ||||    
T  38701629 ggtaacacttagatgatcttgaatttggtgactttgtttctatatctcttctaaccaataattctctttcat 38701558  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 81
Target Start/End: Complemental strand, 3051936 - 3051906
Alignment:
Q  51 ttatgaatgacatttacatatgatcatccaa 81  Q
    |||||||||||||||||||||||||||||||    
T  3051936 ttatgaatgacatttacatatgatcatccaa 3051906  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 256
Target Start/End: Original strand, 6793471 - 6793534
Alignment:
Q  193 ttcgacgactttgagtttgatgactttgtctctatctcgcttctaaccaataattctctctcat 256  Q
    ||||| ||||||| ||||| ||| ||||||||||||||  | ||||||||||||| ||||||||    
T  6793471 ttcgatgactttgtgtttggtgattttgtctctatctctatcctaaccaataattatctctcat 6793534  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 256
Target Start/End: Original strand, 28067307 - 28067352
Alignment:
Q  211 gatgactttgtctctatctcgcttctaaccaataattctctctcat 256  Q
    ||||| ||||||| |||||| |||||||||||| ||||||||||||    
T  28067307 gatgattttgtctttatctctcttctaaccaatcattctctctcat 28067352  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 782248 - 782311
Alignment:
Q  213 tgactttgtctctatctcgcttctaaccaataattctctctcatttaaaatacattaaagtcacc 277  Q
    |||||||||||||||||| || ||||| ||  ||||||||||| | |||||||| ||||||||||    
T  782248 tgactttgtctctatctctctcctaacaaaacattctctctca-tcaaaatacactaaagtcacc 782311  T

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