View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422-Insertion-27 (Length: 569)
Name: NF1422-Insertion-27
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422-Insertion-27 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0692 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 8 - 569
Target Start/End: Original strand, 12892346 - 12892910
Alignment:
| Q |
8 |
acacgaattaaaaaatgcagttaatttcgtatgagaatgagaaactataacttagtttacaaagttacccttcattaatgctatgggaa-gacaagtcca |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
12892346 |
acacgaattaaaaaatgcagttaatttcgtatgagaatgagaaattataacttagtttacaaagttacccttcattaatgctatgggaaagataagtcca |
12892445 |
T |
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| Q |
107 |
attatgtaacttcacatagcatcttaagcatttaggaaagtctgtagtaggcatgatttgtaaatctttgctccccaaacactagatagtggttttctta |
206 |
Q |
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| T |
12892446 |
attatgtaacttcaca--gcatcttcagcatttaggaaagtctgtagtaggcatgatttgtaaatctttgctccccaaatactagatagtggttttctta |
12892543 |
T |
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| Q |
207 |
atcgtacattctttagttaaactattgaaatttggaattcttcaaggatcgtggttctttcgttagtgttaaataatgttaaacttaggcacaacactgc |
306 |
Q |
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| T |
12892544 |
atcgtacattctttagttaaactattgatattttgaattctttgaggatcgtggttctttcattagtgttaaataatgtcaaacttaggcacaacactgc |
12892643 |
T |
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| Q |
307 |
cactcacatttgctgttttaccaggcacataaataaccttggcagaattctattttctatttttggagcttttcctatacttatttttaacatttgttgg |
406 |
Q |
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| T |
12892644 |
cactcacatttgttgttttaccaggcacataaataaccttggcagaattctattttctatttttggagctttttctatacttatttttaacatttgttgg |
12892743 |
T |
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| Q |
407 |
ctcaaacttgtgtacttctgtttaatattactgtattctactttgcagtgctccaacaaagatgttttaggtggatggtgtgattcgggcagcatatttg |
506 |
Q |
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| T |
12892744 |
ctcaaacttgtgtacttctgtttaatattactgtattctactttgcagtgctccaacaaagatgttttaggtggatggtgtgattcgggcagcatatttg |
12892843 |
T |
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| Q |
507 |
tagctgatgttgcttaagtgatatt----gacatattggtctgtctggtaatgattccaactatgta |
569 |
Q |
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| T |
12892844 |
tagttgatgttgcttaagtgatattgacagacatattggtctgtccggtaatgattccaactatgta |
12892910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0692 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: scaffold0692
Description:
Target: scaffold0692; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 8 - 569
Target Start/End: Original strand, 6647 - 7208
Alignment:
| Q |
8 |
acacgaattaaaaaatgcagttaatttcgtatgagaatgagaaactataacttagtttacaaagttacccttcattaatgctatgggaa-gacaagtcca |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| || || ||| |
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| T |
6647 |
acacaaattaaaaaatgcagttaatttcgtatgagaatgagaaattataacttagtttacaaagttacccttcattaatggtatgggaaagataaaacca |
6746 |
T |
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| Q |
107 |
attatgtaacttcacatagcatcttaagcatttaggaaagtctgtagtaggcatgatttgtaaatctttgctccccaaacactagatagtggttttctta |
206 |
Q |
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| T |
6747 |
attacgtaacttcacatagcatcttaagcatttagggaagtctgtagtaggcatgatttgtaaatctttgctccccaaatactagatagtggttttctta |
6846 |
T |
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| Q |
207 |
atcgtacattctttagttaaactattgaaatttggaattcttcaaggatcgtggttctttcgttagtgttaaataatgttaaacttaggcacaacactgc |
306 |
Q |
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| T |
6847 |
attgtacattctttagttaaactattgaaatttggaattcttcgaggatcgtggttctttcattagtgttaaataatgtcaaacttaggcacaacactgc |
6946 |
T |
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| Q |
307 |
cactcacatttgctgttttaccaggcacataaataaccttggcagaattctattttctatttttggagcttttcctatacttatttttaacatttgttgg |
406 |
Q |
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| T |
6947 |
cactcacatttgtt-ttttaccaggtacataaataaccttggcagaattctattttcttcttttggagctttttctatacttatttttaacatttgttgg |
7045 |
T |
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| Q |
407 |
ctcaaacttgtgtacttctgtttaatattactgtattctactttgcagtgctccaacaaagatgttttaggtggatggtgtgattcgggcagcatatttg |
506 |
Q |
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| T |
7046 |
cttaaacttgtgtacttctgtttaatattactgtattctactttgcagtgctccaacaaagatgttttaggtggatggtgtgattcgggcagcatatttg |
7145 |
T |
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| Q |
507 |
tagctgatgttgcttaagtgatattgacatattggtctgtctggtaatgattccaactatgta |
569 |
Q |
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| T |
7146 |
tagctgatgttgcttaagtgatattgacatattggtctgtccggtaatgattccaactatgta |
7208 |
T |
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