View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422-Insertion-28 (Length: 299)
Name: NF1422-Insertion-28
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422-Insertion-28 |
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| [»] chr2 (2 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 8 - 299
Target Start/End: Original strand, 24457324 - 24457615
Alignment:
| Q |
8 |
atttgatgatcgttaaaacaacttaggggacttatgttgatatttactatgacaaagatttgtagtgtgacaatttgtgaaaagttgtaatgagtattgt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
24457324 |
atttgatgatcgttaaaacaacttaggggacttatgttgatatttactatgacaaagatttgtagtgtgacaatttgtgaatagttgtaatgagtattgt |
24457423 |
T |
|
| Q |
108 |
aattggtagtgttggcacaattgtgctgtctccatacttctttcattagtaatgttaatttttcattaaatagccaagtttgaatgcaaacttgattann |
207 |
Q |
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| T |
24457424 |
aattggtagtgttggcacaattgtgatgtctccatacttctttcattagtaatgttaatttttcattaaatagccaagtttgaatgcaaacttgattatt |
24457523 |
T |
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| Q |
208 |
nnnnnacaattaaacaaatgcaaacttacaaggatgaggcaaacagaaagcttcataagaaatctctaaagtgtatgatttttgggatttga |
299 |
Q |
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| T |
24457524 |
tttttacaattaaacaaatgcaaacttacaaggatgaggcaaacagaaagcttcataagaaatctctaaagtatatgatttttgggatttga |
24457615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 297
Target Start/End: Complemental strand, 1613903 - 1613614
Alignment:
| Q |
8 |
atttgatgatcgttaaaacaacttaggggacttatgttgatatttactatgacaaagatttgtagtgtgacaatttgtgaaaagttgtaatgagtattgt |
107 |
Q |
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| T |
1613903 |
atttgatgatcgttaaaacagcttaggggacttatgttgatatttactatgacaaaggtttgtagtatggcaatttgtgaaaagttataatgagtattgt |
1613804 |
T |
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| Q |
108 |
aattggtagtgttggcacaattgtgctgtctccatacttctttcattagtaatgttaatttttcattaaatagccaagtttgaatgcaaacttgattann |
207 |
Q |
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| T |
1613803 |
aattggtagtgttggcacaattatgctgtctccatacttctttcattagtaatgttaatttttcattaaatagccagatttgaatgcaaacttgattatt |
1613704 |
T |
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| Q |
208 |
nnnnnacaattaaacaaatgcaaacttacaaggatgaggcaaacagaaagcttcataagaaatctctaaagtgtatgatttttgggattt |
297 |
Q |
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| T |
1613703 |
tttttacaatcaaacaaacgcaaacgtacaaggatgaggtaaacataaagcttcataagaaatttctaaagtgtatgatttttgagattt |
1613614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 8 - 299
Target Start/End: Complemental strand, 24786069 - 24785777
Alignment:
| Q |
8 |
atttgatgatcgttaaaacaactt-aggggacttatgttgatatttactatgacaaagatttgtagtgtgacaatttgtgaaaagttgtaatgagtattg |
106 |
Q |
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|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
24786069 |
atttgatgatcgttaaaacagctttaggggacttatgttgatatttactatgacaaagatttgtagtataacaatttgtgaaaagttgtaatgagtattg |
24785970 |
T |
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| Q |
107 |
taattggtagtgttggcacaattgtgctgtctccatacttctttcattagtaatgttaatttttcattaaatagccaagtttgaatgcaaacttgattan |
206 |
Q |
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| T |
24785969 |
taattggtagtgttggcacaattatgccgtctccatacttctttcattagtactgttaattttccatcaaatagctaggtttgaatgcaaacttgattat |
24785870 |
T |
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| Q |
207 |
nnnnnnacaattaaacaaatgcaaacttacaaggatgaggcaaacagaaagcttcataagaaatctctaaagtgtatgatttttgggatttga |
299 |
Q |
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| T |
24785869 |
ttttttacaatcaaacaaatgcaaacttacaaggatgaggtaaacagaaagcttcataagaaatctctaaagtgtatgatttttgggatttga |
24785777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 29 - 266
Target Start/End: Original strand, 43229463 - 43229701
Alignment:
| Q |
29 |
cttaggggacttatgttgatatttactatgacaaagatttgtagtgtgacaatttgtgaaaagttgtaatgagtattgtaattggtagtgttggcacaat |
128 |
Q |
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||||||||| || |||||||||||||| |||||||| |||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
43229463 |
cttaggggagttgtgttgatatttactgtgacaaaggtttgtagtatgacgatttgtgaaaagttgtaatgagtattgtaatcggtagtgttggcactat |
43229562 |
T |
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| Q |
129 |
tgtgctgtctccatacttctttcattagtaatgttaatttttcattaaatagccaagtttgaatgcaaactt-gattannnnnnnacaattaaacaaatg |
227 |
Q |
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| T |
43229563 |
tgtgttgtctccatacatcattcattagtaatattaatttttcattaaatagccaggtttgaatgcaaacttagattattgttttacaatcaaacaaatg |
43229662 |
T |
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| Q |
228 |
caaacttacaaggatgaggcaaacagaaagcttcataag |
266 |
Q |
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| T |
43229663 |
caaacttacaaggatgaggcaaatataaggcttcataag |
43229701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 8 - 299
Target Start/End: Complemental strand, 4735615 - 4735322
Alignment:
| Q |
8 |
atttgatgatcgttaaaacaacttaggggacttatgttgatatttactatgacaaagatttgtagtgtgacaatttgtgaaaagttgtaatgagtattgt |
107 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||| || |||||||||||||||||||||||||||||| |
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| T |
4735615 |
atttgatgatcgttaaaacggcttaggggacttatgttgatatttactataacaaaggtttgtagtatggcaatttgtgaaaagttgtaatgagtattgt |
4735516 |
T |
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| Q |
108 |
aattggtagtgttggcacaattgtgctgtctccatacttctttcattagtaatgttaatttttcattaaatagccaagtttgaatgcaaacttgattann |
207 |
Q |
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|||||||||||||||||||||| ||||| || ||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
4735515 |
aattggtagtgttggcacaattatgctgccttcatgcttctttcattagtaatgttaatttttcattaaatagacacgtttgaatgcaaacttgattatt |
4735416 |
T |
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| Q |
208 |
nnnnnacaattaaacaaa-tg-caaacttacaaggatgaggcaaacagaaagcttcataagaaatctctaaagtgtatgatttttgggatttga |
299 |
Q |
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| T |
4735415 |
tttttacaatcaaacaaactgatagagttgcaaggatgaggtaaatagaaagtttcataagaaatctctaaagtgtatgatttttgggatttga |
4735322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 220 - 297
Target Start/End: Complemental strand, 26836934 - 26836857
Alignment:
| Q |
220 |
aacaaatgcaaacttacaaggatgaggcaaacagaaagcttcataagaaatctctaaagtgtatgatttttgggattt |
297 |
Q |
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||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26836934 |
aacaaatagaaacttacaaggatgaggtaaacaaaaagcttcataagaaatctctaaagtgtatgatttttgggattt |
26836857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 8 - 262
Target Start/End: Complemental strand, 44709758 - 44709506
Alignment:
| Q |
8 |
atttgatgatcgttaaaacaacttaggggacttatgttgatatttactatgacaaagatttgtagtgtgacaatttgtgaaaagttgtaatgagtattgt |
107 |
Q |
| |
|
|||||||||||| ||| |||||||| | |||||||||||||||||| ||||||||| | |||| | |||| |||| |||||||||||||||||||||| |
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| T |
44709758 |
atttgatgatcgctaa--caacttagagtacttatgttgatatttaccatgacaaagctatgtactatgaccgtttgggaaaagttgtaatgagtattgt |
44709661 |
T |
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| Q |
108 |
aattggtagtgttggcacaattgtgctgtctccatacttctttcattagtaatgttaatttttcattaaatagccaagtttgaatgcaaacttgattann |
207 |
Q |
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||||||||||||||||| ||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44709660 |
aattggtagtgttggcataattgtgctatctccatacatcttttattagtaatgttaatttttcattaaatagccaagtttgaatgcaaacttgattatt |
44709561 |
T |
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| Q |
208 |
nnnnnacaattaaacaaatgcaaacttacaaggatgaggcaaacagaaagcttca |
262 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
44709560 |
tttttacaatcaaacaaatgcaaacttacaaggatgagttaaacagaaggcttca |
44709506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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