View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1422-Insertion-33 (Length: 96)

Name: NF1422-Insertion-33
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1422-Insertion-33
NF1422-Insertion-33
[»] chr6 (1 HSPs)
chr6 (10-82)||(11323324-11323396)
[»] chr5 (2 HSPs)
chr5 (10-82)||(43370132-43370204)
chr5 (10-37)||(19288852-19288879)
[»] chr4 (1 HSPs)
chr4 (10-79)||(37143330-37143399)
[»] chr2 (2 HSPs)
chr2 (9-37)||(8839849-8839877)
chr2 (10-37)||(40633489-40633516)
[»] chr1 (3 HSPs)
chr1 (10-82)||(1581204-1581274)
chr1 (10-82)||(2666159-2666231)
chr1 (10-37)||(14594681-14594708)


Alignment Details
Target: chr6 (Bit Score: 32; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 11323324 - 11323396
Alignment:
Q  10 aattatacacttaaacaactttttctatnnnnnnnttgttgttggtgccattgaaataaaaatttagattata 82  Q
    ||||||||| ||||||||||||||||||       |||||||||||| |||||||| |  |||||||||||||    
T  11323324 aattatacatttaaacaactttttctataataaaattgttgttggtgtcattgaaaaaggaatttagattata 11323396  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 43370132 - 43370204
Alignment:
Q  10 aattatacacttaaacaactttttctatnnnnnnnttgttgttggtgccattgaaataaaaatttagattata 82  Q
    |||||||| |||||||||||||||||||       |||||||||||| |||| ||| || |||||||||||||    
T  43370132 aattatacccttaaacaactttttctataataaaattgttgttggtgtcatttaaaaaagaatttagattata 43370204  T

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Target: chr5; HSP #2
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 37
Target Start/End: Complemental strand, 19288879 - 19288852
Alignment:
Q  10 aattatacacttaaacaactttttctat 37  Q
    ||||||||||||||||||||||||||||    
T  19288879 aattatacacttaaacaactttttctat 19288852  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 37143399 - 37143330
Alignment:
Q  10 aattatacacttaaacaactttttctatnnnnnnnttgttgttggtgccattgaaataaaaatttagatt 79  Q
    |||||||| |||||||||||||||||||       |||||||||||| |||| ||| || ||||||||||    
T  37143399 aattatacccttaaacaactttttctataataaaattgttgttggtgtcattaaaaaaagaatttagatt 37143330  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 8839849 - 8839877
Alignment:
Q  9 aaattatacacttaaacaactttttctat 37  Q
    |||||||||||||||||||||||||||||    
T  8839849 aaattatacacttaaacaactttttctat 8839877  T

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Target: chr2; HSP #2
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 37
Target Start/End: Complemental strand, 40633516 - 40633489
Alignment:
Q  10 aattatacacttaaacaactttttctat 37  Q
    ||||||||||||||||||||||||||||    
T  40633516 aattatacacttaaacaactttttctat 40633489  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 1581274 - 1581204
Alignment:
Q  10 aattatacacttaaacaactttttctatnnnnnnnttgttgttggtgccattgaaataaaaatttagattata 82  Q
    |||||||| |||||||||||||||||||       ||||||||| || |||||||  ||||||||||||||||    
T  1581274 aattatacccttaaacaactttttctataataaaattgttgttgatgtcattgaa--aaaaatttagattata 1581204  T

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Target: chr1; HSP #2
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 2666159 - 2666231
Alignment:
Q  10 aattatacacttaaacaactttttctatnnnnnnnttgttgttggtgccattgaaataaaaatttagattata 82  Q
    |||||||| |||||||||||||||||||       ||||| |||||| |||| ||| || |||||||||||||    
T  2666159 aattatacccttaaacaactttttctataataaaattgttattggtgtcattaaaaaaagaatttagattata 2666231  T

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Target: chr1; HSP #3
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 37
Target Start/End: Complemental strand, 14594708 - 14594681
Alignment:
Q  10 aattatacacttaaacaactttttctat 37  Q
    ||||||||||||||||||||||||||||    
T  14594708 aattatacacttaaacaactttttctat 14594681  T

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