View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1422-Insertion-35 (Length: 74)

Name: NF1422-Insertion-35
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1422-Insertion-35
NF1422-Insertion-35
[»] chr3 (21 HSPs)
chr3 (8-74)||(42100698-42100764)
chr3 (8-74)||(46941063-46941129)
chr3 (10-74)||(53273708-53273772)
chr3 (8-74)||(40480759-40480825)
chr3 (8-74)||(40808875-40808941)
chr3 (8-74)||(45126952-45127018)
chr3 (8-74)||(47191050-47191115)
chr3 (8-74)||(54237106-54237172)
chr3 (8-74)||(24688426-24688492)
chr3 (8-74)||(25413691-25413757)
chr3 (8-74)||(27748573-27748639)
chr3 (8-74)||(42394443-42394509)
chr3 (8-74)||(53581882-53581948)
chr3 (8-74)||(54246172-54246238)
chr3 (8-74)||(36150140-36150206)
chr3 (10-70)||(29558262-29558322)
chr3 (8-74)||(1078237-1078302)
chr3 (8-70)||(4190293-4190355)
chr3 (8-70)||(9434134-9434196)
chr3 (8-70)||(10457920-10457982)
chr3 (8-70)||(25996278-25996340)
[»] chr1 (16 HSPs)
chr1 (8-74)||(43571110-43571176)
chr1 (8-74)||(5489786-5489852)
chr1 (8-70)||(37814788-37814850)
chr1 (8-70)||(38335928-38335990)
chr1 (9-74)||(24769523-24769588)
chr1 (8-74)||(4401337-4401404)
chr1 (8-74)||(48498986-48499052)
chr1 (8-70)||(44112687-44112749)
chr1 (8-70)||(48119638-48119700)
chr1 (40-73)||(4888085-4888118)
chr1 (11-66)||(750337-750392)
chr1 (8-74)||(2497586-2497652)
chr1 (8-74)||(7447836-7447901)
chr1 (8-70)||(35003304-35003366)
chr1 (8-74)||(50448284-50448350)
chr1 (8-70)||(23989551-23989614)
[»] scaffold0119 (1 HSPs)
scaffold0119 (8-74)||(695-761)
[»] chr8 (20 HSPs)
chr8 (8-74)||(42295205-42295271)
chr8 (8-74)||(5754913-5754979)
chr8 (8-74)||(11582776-11582842)
chr8 (8-74)||(29705372-29705438)
chr8 (8-74)||(36743507-36743573)
chr8 (8-74)||(2165987-2166053)
chr8 (8-74)||(29800974-29801040)
chr8 (8-74)||(30660766-30660832)
chr8 (8-74)||(30912586-30912652)
chr8 (11-74)||(45397329-45397392)
chr8 (8-70)||(1375552-1375614)
chr8 (8-74)||(20148770-20148836)
chr8 (8-74)||(26125645-26125711)
chr8 (8-74)||(31384674-31384740)
chr8 (8-74)||(42197459-42197525)
chr8 (8-74)||(42699267-42699333)
chr8 (8-74)||(2547006-2547072)
chr8 (8-70)||(18066746-18066808)
chr8 (8-70)||(35181526-35181588)
chr8 (12-70)||(33630021-33630079)
[»] chr6 (16 HSPs)
chr6 (8-74)||(26670033-26670099)
chr6 (10-74)||(7367561-7367625)
chr6 (8-74)||(7273359-7273425)
chr6 (8-74)||(9698357-9698423)
chr6 (8-74)||(30014353-30014419)
chr6 (8-70)||(3213410-3213472)
chr6 (12-74)||(7292761-7292823)
chr6 (8-74)||(13743245-13743311)
chr6 (8-74)||(13748745-13748811)
chr6 (8-74)||(24204011-24204077)
chr6 (8-74)||(26466809-26466875)
chr6 (8-70)||(21279939-21280001)
chr6 (8-70)||(27441552-27441614)
chr6 (8-74)||(30735992-30736058)
chr6 (8-70)||(21293705-21293767)
chr6 (8-70)||(33242413-33242475)
[»] chr2 (17 HSPs)
chr2 (10-74)||(43335787-43335851)
chr2 (8-74)||(33229311-33229378)
chr2 (8-74)||(1750424-1750490)
chr2 (8-74)||(30838642-30838708)
chr2 (8-73)||(16096757-16096822)
chr2 (8-74)||(12302277-12302343)
chr2 (8-74)||(19047167-19047233)
chr2 (8-74)||(43490425-43490491)
chr2 (8-70)||(12415488-12415550)
chr2 (8-70)||(12427548-12427610)
chr2 (8-70)||(11825682-11825744)
chr2 (8-66)||(16803978-16804036)
chr2 (8-66)||(16843260-16843318)
chr2 (8-70)||(43114567-43114629)
chr2 (8-50)||(34817824-34817866)
chr2 (36-74)||(39149316-39149354)
chr2 (8-66)||(41282006-41282064)
[»] chr7 (23 HSPs)
chr7 (8-74)||(35069731-35069797)
chr7 (8-74)||(24001036-24001102)
chr7 (8-74)||(26898426-26898492)
chr7 (8-74)||(42538455-42538521)
chr7 (11-74)||(42972865-42972928)
chr7 (8-74)||(5015405-5015471)
chr7 (8-74)||(5810948-5811014)
chr7 (20-70)||(32029845-32029895)
chr7 (8-66)||(43317453-43317511)
chr7 (8-74)||(44326188-44326254)
chr7 (8-74)||(45326030-45326096)
chr7 (8-74)||(4638223-4638289)
chr7 (8-66)||(5194263-5194321)
chr7 (8-70)||(10573759-10573821)
chr7 (8-70)||(31408661-31408723)
chr7 (8-74)||(43343648-43343714)
chr7 (8-74)||(44416958-44417024)
chr7 (8-74)||(9216312-9216377)
chr7 (8-70)||(40236929-40236991)
chr7 (21-70)||(38160607-38160656)
chr7 (14-74)||(27393284-27393344)
chr7 (8-73)||(41861684-41861751)
chr7 (11-70)||(24280624-24280683)
[»] chr5 (12 HSPs)
chr5 (8-74)||(41334687-41334753)
chr5 (8-74)||(2614673-2614739)
chr5 (8-74)||(7617143-7617209)
chr5 (8-74)||(22512315-22512381)
chr5 (8-73)||(33855068-33855133)
chr5 (8-74)||(18033992-18034058)
chr5 (8-70)||(5257005-5257067)
chr5 (8-70)||(32473422-32473484)
chr5 (8-74)||(33801479-33801545)
chr5 (8-56)||(25915029-25915077)
chr5 (8-70)||(38470589-38470651)
chr5 (11-70)||(17208087-17208146)
[»] chr4 (24 HSPs)
chr4 (8-74)||(55966370-55966436)
chr4 (10-74)||(12496968-12497032)
chr4 (8-74)||(43949825-43949892)
chr4 (8-74)||(1771290-1771356)
chr4 (8-74)||(25051703-25051769)
chr4 (12-74)||(27316737-27316799)
chr4 (8-74)||(28982846-28982912)
chr4 (8-74)||(33703151-33703217)
chr4 (8-74)||(48463474-48463540)
chr4 (8-74)||(39631110-39631177)
chr4 (8-74)||(23204802-23204868)
chr4 (8-74)||(27550319-27550385)
chr4 (8-74)||(27864574-27864640)
chr4 (8-74)||(35017743-35017808)
chr4 (8-70)||(27893870-27893932)
chr4 (8-66)||(28988483-28988541)
chr4 (8-74)||(41878416-41878482)
chr4 (8-74)||(43514710-43514776)
chr4 (8-74)||(43735752-43735818)
chr4 (8-70)||(711970-712032)
chr4 (8-70)||(3756274-3756336)
chr4 (8-70)||(17619180-17619242)
chr4 (8-74)||(23035990-23036056)
chr4 (13-74)||(31680917-31680978)
[»] scaffold0157 (1 HSPs)
scaffold0157 (10-74)||(23445-23509)
[»] scaffold0385 (1 HSPs)
scaffold0385 (8-74)||(11261-11327)
[»] scaffold0187 (2 HSPs)
scaffold0187 (8-74)||(14212-14278)
scaffold0187 (8-74)||(24540-24606)
[»] scaffold0038 (1 HSPs)
scaffold0038 (8-74)||(112665-112731)
[»] scaffold0003 (1 HSPs)
scaffold0003 (8-70)||(45747-45809)


Alignment Details
Target: chr3 (Bit Score: 59; Significance: 1e-25; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-25
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 42100698 - 42100764
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  42100698 acatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttc 42100764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-23
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 46941063 - 46941129
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||    
T  46941063 acatgaacaccctttattcctacatctcattgtacaccccatgtattagggatattttggtaagttc 46941129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 53273772 - 53273708
Alignment:
Q  10 atgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||| | ||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  53273772 atgaacatcatttattcctatacctcattgtacatcccatgtattagggatattttggtaagttc 53273708  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 40480759 - 40480825
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| ||  || |||||||||||| |||||||||||||||||||||||||||    
T  40480759 acatgaacaccctttattcatatgccccattgtacatcctatgtattagggatattttggtaagttc 40480825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 40808875 - 40808941
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    |||| |||||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  40808875 acatcaacaccatttattcctacaccccattgtacaccccatgtattagggatattttggtaagttc 40808941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 45127018 - 45126952
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    |||| |||||||||||||| |||| | ||||||||| ||||||||||||||||||||||||||||||    
T  45127018 acataaacaccctttattcatacatcccattgtacaccccatgtattagggatattttggtaagttc 45126952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 47191115 - 47191050
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||| |||||||    
T  47191115 acatgaacaccctttattcctacacctcattgtaca-cccatgtattagagatattttgataagttc 47191050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 54237106 - 54237172
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| |||| | ||||||||| || |||||||||||||||||||||||||||    
T  54237106 acatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttc 54237172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 24688492 - 24688426
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||  |||||  ||||||||| || |||||||||||||||||||||||||||    
T  24688492 acatgaacaccctttatttctacactccattgtacaccctatgtattagggatattttggtaagttc 24688426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 25413691 - 25413757
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| |||||| ||||||||| |  |||||||||||||||||| ||||||||    
T  25413691 acatgaacaccctttattcctacaccccattgtacaccttatgtattagggatatttttgtaagttc 25413757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 27748573 - 27748639
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||| ||||||| ||||||||||| |||| |  |||||||||||||||||||||||||||    
T  27748573 acatgaacaccttttattcatacacctcattatacaccttatgtattagggatattttggtaagttc 27748639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 42394509 - 42394443
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| ||||   ||||||||| || |||||||||||||||||||||||||||    
T  42394509 acatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttc 42394443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 53581948 - 53581882
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    |||||||||| |||||||| |||||  |||||||||||| ||||||||||||||||||| |||||||    
T  53581948 acatgaacactctttattcatacactccattgtacatcctatgtattagggatattttgataagttc 53581882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 54246238 - 54246172
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| |||||| ||||||||| || ||||||||| |||||||| ||||||||    
T  54246238 acatgaacaccctttattcctacaccccattgtacaccctatgtattagagatatttttgtaagttc 54246172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 36150140 - 36150206
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||| ||||||||||| |||||| |||| |||| || |||||| ||||||||||||||||||||    
T  36150140 acatgaataccctttattcatacaccccattatacaccctatgtatcagggatattttggtaagttc 36150206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 29558322 - 29558262
Alignment:
Q  10 atgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    ||||||||||||||||| |||| ||||||||||| || || ||||||| |||| |||||||    
T  29558322 atgaacaccctttattcatacatctcattgtacaccctatatattaggaatatattggtaa 29558262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 1078237 - 1078302
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| | |||||||||||||| |  |||||||| ||||||||| ||| ||||    
T  1078237 acatgaacaccctttattcctgcacctcattgtacacctaatgtatta-ggatatttttgtaggttc 1078302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 4190355 - 4190293
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    |||||||||||||||| || ||||||  |||||||| |  ||||||||| |||||||||||||    
T  4190355 acatgaacaccctttaatcatacaccctattgtacaccttatgtattagagatattttggtaa 4190293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 9434134 - 9434196
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    |||||||||||||||| || |||||   |||||||| |||||| |||||||| ||||||||||    
T  9434134 acatgaacaccctttaatcatacactctattgtacaccccatgcattagggacattttggtaa 9434196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 10457982 - 10457920
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    ||||||||||| |||| || ||||||  |||||||| |||||| |||| ||||||||||||||    
T  10457982 acatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaa 10457920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 25996278 - 25996340
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    |||||||||||||||| || |||| || |||||||| ||||| ||||| ||| ||||||||||    
T  25996278 acatgaacaccctttaatcatacatcttattgtacaccccatatattaaggacattttggtaa 25996340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-25; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-25
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 43571176 - 43571110
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  43571176 acatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttc 43571110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 5489786 - 5489852
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| |||| | ||||||||| || |||||||||||||||||||||||||||    
T  5489786 acatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttc 5489852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 37814788 - 37814850
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    |||| |||||||||||||| |||| ||||||||||| ||||||||||| ||||||||||||||    
T  37814788 acataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaa 37814850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 38335928 - 38335990
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    |||||||||||||||| || ||||||| ||||||||||||||| |||| ||||||||||||||    
T  38335928 acatgaacaccctttaatcatacaccttattgtacatcccatgcattaaggatattttggtaa 38335990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 24769588 - 24769523
Alignment:
Q  9 catgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    |||||||||| ||||||  |||||  ||||||||| ||||||||||||||||||||||||||||||    
T  24769588 catgaacaccttttatttctacactccattgtacaccccatgtattagggatattttggtaagttc 24769523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 4401337 - 4401404
Alignment:
Q  8 acatgaacacccttt-attcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    |||||||||| |||| |||| ||||| |||||||||| |||||||||||| |||||||||||||||||    
T  4401337 acatgaacactcttttattcctacacttcattgtacaccccatgtattagagatattttggtaagttc 4401404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 48499052 - 48498986
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    |||||||||| |||||||  |||||  ||||||||| | ||||||||||||||||||||||||||||    
T  48499052 acatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttc 48498986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 44112687 - 44112749
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    |||||||||||||||| || ||||||  |||||||| |||||| |||||||| ||||||||||    
T  44112687 acatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaa 44112749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 48119638 - 48119700
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    |||||||||||||||| || ||||||  |||||||| |||||| |||| ||||||||||||||    
T  48119638 acatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttggtaa 48119700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 4888085 - 4888118
Alignment:
Q  40 tacatcccatgtattagggatattttggtaagtt 73  Q
    ||||||||||||||||||||||||||||||||||    
T  4888085 tacatcccatgtattagggatattttggtaagtt 4888118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 750392 - 750337
Alignment:
Q  11 tgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttg 66  Q
    |||||||||||  ||| |||||| ||||||||| ||||||||| ||||||||||||    
T  750392 tgaacacccttatttcctacaccccattgtacaccccatgtatcagggatattttg 750337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 2497652 - 2497586
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    |||| |||||| ||||||| ||||   ||||||||| ||||| ||||| ||||||||||||||||||    
T  2497652 acataaacaccatttattcatacattccattgtacaccccatatattaaggatattttggtaagttc 2497586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 7447836 - 7447901
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||| ||||||||| |||| | ||||||||| |||||||||||  ||||||||| |||||||    
T  7447836 acatgaacatcctttattcctacatcccattgtaca-cccatgtattacagatattttgataagttc 7447901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 35003304 - 35003366
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    |||||||||||||||| || ||||||  |||||||| |||||  |||| ||||||||||||||    
T  35003304 acatgaacaccctttaatcatacaccctattgtacaccccatacattaaggatattttggtaa 35003366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 50448350 - 50448284
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    |||||||||| |||||||  |||||  ||||||||| |  |||||||||||||||||| ||||||||    
T  50448350 acatgaacactctttatttctacactccattgtacaccttatgtattagggatatttttgtaagttc 50448284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 23989614 - 23989551
Alignment:
Q  8 acatgaacacccttt-attcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    ||||||||||||||| |||| |||||   |||||| | || |||||||||||||||||||||||    
T  23989614 acatgaacacccttttattcatacactcaattgtataccctatgtattagggatattttggtaa 23989551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 55; Significance: 3e-23; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 55; E-Value: 3e-23
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 695 - 761
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||    
T  695 acatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttc 761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 3e-23; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-23
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 42295205 - 42295271
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||    
T  42295205 acatgaacaccctttattcctacacctcattgtacactccatgtattagggatattttggtaagttc 42295271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 5754913 - 5754979
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||| ||||||| |||| | ||||||||||||||| ||||||||||||||||||||||||    
T  5754913 acatgaacaccttttattcctacatcccattgtacatcccatatattagggatattttggtaagttc 5754979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 11582776 - 11582842
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| |||| | ||||||||| || |||||||||||||||||||||||||||    
T  11582776 acatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttc 11582842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 29705372 - 29705438
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||  |||||| ||||||||| |||||||||||||||||||||| |||||||    
T  29705372 acatgaacaccctttatttctacaccccattgtacaccccatgtattagggatattttgataagttc 29705438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 36743573 - 36743507
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| |||| | ||||||||| || |||||||||||||||||||||||||||    
T  36743573 acatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttc 36743507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 2166053 - 2165987
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||| ||||||| |||||| ||||||| | |||||||||||| |||||||||||||||||    
T  2166053 acatgaacaccatttattcctacaccccattgtataccccatgtattagagatattttggtaagttc 2165987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 29801040 - 29800974
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    |||| |||||| ||||||| |||| | ||||||||| ||||||||||||||||||||||||||||||    
T  29801040 acataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttc 29800974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 30660832 - 30660766
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||  |||| | ||||||||| || |||||||||||||||||||||||||||    
T  30660832 acatgaacaccctttatttctacatcccattgtacaccctatgtattagggatattttggtaagttc 30660766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 30912652 - 30912586
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| |||||| |||||||||   |||||||||||| |||||||||||||||    
T  30912652 acatgaacaccctttattcctacaccccattgtacacttcatgtattaggggtattttggtaagttc 30912586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 45397329 - 45397392
Alignment:
Q  11 tgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    |||||||||||||||| |||||| |||| |||| || |||||||||||||||||| ||||||||    
T  45397329 tgaacaccctttattcctacaccccattctacaccctatgtattagggatatttttgtaagttc 45397392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 1375552 - 1375614
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    ||||||||||| ||||||| ||||||  |||||||| ||||| ||||||||||||||||||||    
T  1375552 acatgaacaccttttattcatacacccaattgtacaccccatatattagggatattttggtaa 1375614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 20148770 - 20148836
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    |||| |||||||||||||| |||| | ||||||||| | ||| ||||||||||||||||||||||||    
T  20148770 acataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttc 20148836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 26125645 - 26125711
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    |||| |||||||||||||| ||||   ||||||||| || |||||||||||||||||||||||||||    
T  26125645 acataaacaccctttattcatacattccattgtacaccctatgtattagggatattttggtaagttc 26125711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 31384674 - 31384740
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| ||||    |||||||| ||||||||||||| ||||||||||||||||    
T  31384674 acatgaacaccctttattcttacattctattgtacaccccatgtattaggaatattttggtaagttc 31384740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 42197525 - 42197459
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||| ||||||| |||||| ||||| |||  | |||||||||||||||||||||||||||    
T  42197525 acatgaacaccatttattcctacaccccattgcacacactatgtattagggatattttggtaagttc 42197459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 42699267 - 42699333
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| |||||| ||||||||| |  |||||||| ||||||||| ||||||||    
T  42699267 acatgaacaccctttattcctacaccccattgtacaccttatgtattatggatatttttgtaagttc 42699333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 2547006 - 2547072
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    |||||||||| |||||||  |||||  ||||||||| | ||||||||||||||||||| ||||||||    
T  2547006 acatgaacactctttatttctacactccattgtacacctcatgtattagggatattttagtaagttc 2547072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 18066808 - 18066746
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    |||||||||||||||| || ||||    |||||||||||||||||||||||||||||| ||||    
T  18066808 acatgaacaccctttaatcatacattctattgtacatcccatgtattagggatattttagtaa 18066746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 35181526 - 35181588
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    |||||||||||||||| || ||||||  |||||||| |||||| |||||||| ||||||||||    
T  35181526 acatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaa 35181588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 33630079 - 33630021
Alignment:
Q  12 gaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    |||||||||||| || |||||||||||||||| || ||| |||||||| ||||| ||||    
T  33630079 gaacaccctttaatcatacacctcattgtacaccctatgcattagggacattttagtaa 33630021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 3e-23; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-23
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 26670099 - 26670033
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||    
T  26670099 acatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttc 26670033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-22
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 7367561 - 7367625
Alignment:
Q  10 atgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7367561 atgaacatcatttattcatacacctcattgtacatcccatgtattagggatattttggtaagttc 7367625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 6e-21
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 7273425 - 7273359
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| ||||||| |||||||| |||||||||||| |||||||||||||||||    
T  7273425 acatgaacaccctttattcctacaccttattgtacaccccatgtattagagatattttggtaagttc 7273359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 9698423 - 9698357
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| |||| | ||||||||| || |||||||||||||||||||||||||||    
T  9698423 acatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttc 9698357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 30014353 - 30014419
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| |||| | |||| |||||||||||||||||| ||||||||||||||||    
T  30014353 acatgaacaccctttattcctacatcccattatacatcccatgtattaggcatattttggtaagttc 30014419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 3213410 - 3213472
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    |||| |||||||||||||| |||| ||||||||||| ||||||||||| ||||||||||||||    
T  3213410 acataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaa 3213472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 7292761 - 7292823
Alignment:
Q  12 gaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||| ||||||| ||||||||||| |||| || |||||||||||||||||||||||||||    
T  7292761 gaacaccatttattcatacacctcattatacaccctatgtattagggatattttggtaagttc 7292823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 13743311 - 13743245
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||| ||||||| |||| |  |||||||| ||||||||||||||||||||||||||||||    
T  13743311 acatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttc 13743245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 13748811 - 13748745
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||| ||||||| |||| |  |||||||| ||||||||||||||||||||||||||||||    
T  13748811 acatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttc 13748745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 24204077 - 24204011
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||| ||||||| ||||||  ||||||||  |||||||||||||||||||||||||||||    
T  24204077 acatgaacaccatttattcctacaccctattgtacactccatgtattagggatattttggtaagttc 24204011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 26466809 - 26466875
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    |||| |||||||||||||| |||||| |||||||||  ||||||||||||| |||||||||||||||    
T  26466809 acataaacaccctttattcctacaccccattgtacactccatgtattagggttattttggtaagttc 26466875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 21279939 - 21280001
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    ||||||||||||||||||  ||||   ||||| ||||||||||||||||||||||||||||||    
T  21279939 acatgaacaccctttatttctacattccattgcacatcccatgtattagggatattttggtaa 21280001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 27441552 - 27441614
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    |||||||||||||||| || ||||||  ||||||||||| |||||||| ||||||||||||||    
T  27441552 acatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaa 27441614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 30735992 - 30736058
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||  ||||||| |||||| ||||||||| | |||||||||| |||||||||||||||||    
T  30735992 acatgaacactttttattcctacaccccattgtacacctcatgtattagtgatattttggtaagttc 30736058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 21293767 - 21293705
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    |||| |||||||||||||| ||||  ||| |||||| ||||||||||| ||||||||||||||    
T  21293767 acataaacaccctttattcatacatttcactgtacaccccatgtattaaggatattttggtaa 21293705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 33242413 - 33242475
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    ||||||||||| |||| || ||||||| |||||||| ||||||||||| ||| ||||||||||    
T  33242413 acatgaacaccatttaatcatacaccttattgtacaccccatgtattaaggacattttggtaa 33242475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 4e-22; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-22
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 43335851 - 43335787
Alignment:
Q  10 atgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  43335851 atgaacatcatttattcctacacctcattgtacatcccatgtattagggatattttggtaagttc 43335787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 33229311 - 33229378
Alignment:
Q  8 acatgaacacccttt-attcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  33229311 acatgaacacccttttattcctacacctcattgtacaccccatgtattagggatattttggtaagttc 33229378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 1750424 - 1750490
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| |||||| ||||||||| || |||||||||||||||||| ||||||||    
T  1750424 acatgaacaccctttattcctacaccccattgtacaccctatgtattagggatatttttgtaagttc 1750490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 30838642 - 30838708
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||  |||| || |||||||| ||||||||||||||||||||||||||||||    
T  30838642 acatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttc 30838708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 6e-18
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 16096757 - 16096822
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagtt 73  Q
    ||||||||||||||||||| |||||| |||| |||| |||||||||||||||||||||||| ||||    
T  16096757 acatgaacaccctttattcctacaccccattatacaccccatgtattagggatattttggtgagtt 16096822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 12302343 - 12302277
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||  |||||| ||||||||| || |||||||||||||||||| ||||||||    
T  12302343 acatgaacaccctttatttctacaccccattgtacaccctatgtattagggatatttttgtaagttc 12302277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 19047167 - 19047233
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| ||||   ||||||||| || |||||||||||||||||||||||||||    
T  19047167 acatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttc 19047233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 43490491 - 43490425
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| |||| | |||||||||  | |||||||||||||||||||||||||||    
T  43490491 acatgaacaccctttattcctacatcccattgtacactctatgtattagggatattttggtaagttc 43490425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 12415550 - 12415488
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    |||||||||||||||| || ||||||| |||||||| |||||| |||||||| ||||||||||    
T  12415550 acatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaa 12415488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 12427610 - 12427548
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    |||||||||||||||| || ||||||| |||||||| |||||| |||||||| ||||||||||    
T  12427610 acatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaa 12427548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 11825744 - 11825682
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    |||||||||||||||| || ||||||  |||||||| |||||| |||||||| ||||||||||    
T  11825744 acatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaa 11825682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 16803978 - 16804036
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttg 66  Q
    |||||||||||||||| || ||||||  ||||||||||||||| |||||||| ||||||    
T  16803978 acatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttg 16804036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 16843260 - 16843318
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttg 66  Q
    |||||||||||||||| || ||||||  ||||||||||||||| |||||||| ||||||    
T  16843260 acatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttg 16843318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 43114567 - 43114629
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    |||||||||||||||| || ||||||  |||||||| |||||| |||||||| ||||||||||    
T  43114567 acatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaa 43114629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 34817866 - 34817824
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatg 50  Q
    |||||||||||||||||||  ||||||||||||||| ||||||    
T  34817866 acatgaacaccctttattcacacacctcattgtacaccccatg 34817824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 39149354 - 39149316
Alignment:
Q  36 attgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||| ||||||||| |||||||||||||||||    
T  39149354 attgtacatcctatgtattagagatattttggtaagttc 39149316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 41282064 - 41282006
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttg 66  Q
    |||||||||||||||| || ||||||  |||||||| |||||| |||||||| ||||||    
T  41282064 acatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttg 41282006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 6e-21; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-21
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 35069731 - 35069797
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    |||||||||| |||||||| |||||||||||||||| | ||||||||||||||||||||||||||||    
T  35069731 acatgaacactctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttc 35069797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 24001102 - 24001036
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| |||| | ||||||||| || |||||||||||||||||||||||||||    
T  24001102 acatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttc 24001036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 26898492 - 26898426
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||| ||||||| ||||||  ||||||||| |||||||||||||||||||||||||||||    
T  26898492 acatgaacaccttttattcatacacccaattgtacattccatgtattagggatattttggtaagttc 26898426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 42538521 - 42538455
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| |||| | ||||||||| || |||||||||||||||||||||||||||    
T  42538521 acatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttc 42538455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 42972865 - 42972928
Alignment:
Q  11 tgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    |||||| ||||||||| |||||  ||||||||| | ||||||||||||||||||||||||||||    
T  42972865 tgaacatcctttattcctacactccattgtacacctcatgtattagggatattttggtaagttc 42972928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 5015405 - 5015471
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    |||||||||| |||||||  |||||  ||||||||| | ||||||||||||||||||||||||||||    
T  5015405 acatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttc 5015471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 5811014 - 5810948
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    |||||| |||||||||||| |||||| ||||||||| || || |||||||||||||||| |||||||    
T  5811014 acatgaccaccctttattcctacaccccattgtacaccctatatattagggatattttgataagttc 5810948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 32029895 - 32029845
Alignment:
Q  20 tttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    ||||||| |||||| ||||||||| ||||||||||||||||||||||||||    
T  32029895 tttattcctacaccccattgtacaccccatgtattagggatattttggtaa 32029845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 43317453 - 43317511
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttg 66  Q
    ||||||||||| ||||||| ||||||||||||||||||| |||  ||||||||||||||    
T  43317453 acatgaacaccatttattcatacacctcattgtacatcctatgctttagggatattttg 43317511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 44326188 - 44326254
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    |||| |||||||||||||| |||| | ||||||||| | ||| ||||||||||||||||||||||||    
T  44326188 acataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttc 44326254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 45326030 - 45326096
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    |||| |||||| ||||||| |||| | ||||||||| ||||| ||||||||||||||||||||||||    
T  45326030 acataaacaccttttattcatacatcacattgtacaccccatatattagggatattttggtaagttc 45326096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 4638289 - 4638223
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||| ||||||| |||||   |||||||| ||||| ||||| ||||||||||||||||||    
T  4638289 acatgaacaccttttattcatacactcaattgtacaccccatatattatggatattttggtaagttc 4638223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 5194321 - 5194263
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttg 66  Q
    ||||||||||| ||||||| |||||||||||||||| || |||| ||| ||||||||||    
T  5194321 acatgaacaccatttattcatacacctcattgtacaccctatgttttaaggatattttg 5194263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 10573759 - 10573821
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    |||| |||||||||||||| |||| |  |||||||| ||||||||||||| ||||||||||||    
T  10573759 acataaacaccctttattcatacatcctattgtacaccccatgtattaggaatattttggtaa 10573821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 31408723 - 31408661
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    |||||||||||||||| || |||||   ||||||||||||||| |||| ||||||||||||||    
T  31408723 acatgaacaccctttaatcatacactctattgtacatcccatgcattaaggatattttggtaa 31408661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 43343714 - 43343648
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||| | ||||||  ||||||  |||||||| |||||||||||||||||||||| |||||||    
T  43343714 acatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttc 43343648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 44417024 - 44416958
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||| | ||||||  ||||||  |||||||| |||||||||||||||||||||| |||||||    
T  44417024 acatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttc 44416958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 9216312 - 9216377
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| || | |  |||||||| |||||| ||||| |||||||||||||||||    
T  9216312 acatgaacaccctttattcctatatcctattgtaca-cccatgcattagagatattttggtaagttc 9216377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 40236929 - 40236991
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    |||||||||||||||| || |||| |  |||||||| |||||| |||||||| ||||||||||    
T  40236929 acatgaacaccctttaatcatacatcctattgtacaccccatgcattagggacattttggtaa 40236991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 38160656 - 38160607
Alignment:
Q  21 ttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    |||||| |||||  ||||||||| ||||||||||||||||||||| ||||    
T  38160656 ttattcttacactccattgtacaccccatgtattagggatattttagtaa 38160607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 27393344 - 27393284
Alignment:
Q  14 acaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||| |||| |  ||||||||  | |||||||||||||||||| ||||||||    
T  27393344 acaccctttattcctacatcctattgtacactctatgtattagggatatttttgtaagttc 27393284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 41861684 - 41861751
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtat--tagggatattttggtaagtt 73  Q
    ||||||||||||||||||| ||||||  ||| |||| || ||||||  ||| ||||||||||||||||    
T  41861684 acatgaacaccctttattcatacacccaattatacaccctatgtattatagagatattttggtaagtt 41861751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 24280683 - 24280624
Alignment:
Q  11 tgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    |||||||||||||||| ||||||  ||| ||||||||||| | |||  ||||||||||||    
T  24280683 tgaacaccctttattcatacaccctattctacatcccatgcactagaaatattttggtaa 24280624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 6e-21; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-21
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 41334753 - 41334687
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| ||||||||||| |||| || |||||||||||||||||||||||||||    
T  41334753 acatgaacaccctttattcatacacctcattatacaccctatgtattagggatattttggtaagttc 41334687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 2614739 - 2614673
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| |||| | ||||||||| || |||||||||||||||||||||||||||    
T  2614739 acatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttc 2614673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 7617143 - 7617209
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| |||||  |||| |||| ||||||||||||||||||||||||||||||    
T  7617143 acatgaacaccctttattcatacactccattatacaccccatgtattagggatattttggtaagttc 7617209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 22512315 - 22512381
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| |||||  |||||||||  |||||||||||||||||||||||||||||    
T  22512315 acatgaacaccctttattcctacactccattgtacactccatgtattagggatattttggtaagttc 22512381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 6e-18
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 33855133 - 33855068
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagtt 73  Q
    ||||||||||||||||||| |||||| ||||||||| ||||||||||||| | |||||||||||||    
T  33855133 acatgaacaccctttattcctacaccccattgtacaccccatgtattaggaacattttggtaagtt 33855068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 18033992 - 18034058
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| |||||  ||||||||| || |||||||||||||||||| ||||||||    
T  18033992 acatgaacaccctttattcctacactccattgtacaccctatgtattagggatatttttgtaagttc 18034058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 5257005 - 5257067
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    |||| |||||| ||||||| |||| | ||||||||| ||||||||||||||||||||||||||    
T  5257005 acataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaa 5257067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 32473484 - 32473422
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    |||||||||||||||| || ||||||| |||||||| | |||| |||||||||||||||||||    
T  32473484 acatgaacaccctttaatcatacaccttattgtacaccacatgcattagggatattttggtaa 32473422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 33801479 - 33801545
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||| ||||||||  |||||| |||||||||  |||||||||||||||||||| ||||||||    
T  33801479 acatgaacatcctttatttctacaccccattgtacactccatgtattagggatattttagtaagttc 33801545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 25915077 - 25915029
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattag 56  Q
    ||||||||||||||||||| |||||||||||||||| || |||||||||    
T  25915077 acatgaacaccctttattcctacacctcattgtacacccaatgtattag 25915029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 38470589 - 38470651
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    |||| |||||||||||||| ||||   ||||||||| ||||||||||| ||||||||||||||    
T  38470589 acataaacaccctttattcatacattccattgtacaccccatgtattaaggatattttggtaa 38470651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 17208087 - 17208146
Alignment:
Q  11 tgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    ||||||||||||| || ||||| | |||||||| |||||| |||| ||| ||||||||||    
T  17208087 tgaacaccctttaatcatacactttattgtacaccccatgcattaaggacattttggtaa 17208146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 6e-21; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-21
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 55966436 - 55966370
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    |||| |||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||    
T  55966436 acataaacaccctttattcatacatcccattgtacatcccatgtattagggatattttggtaagttc 55966370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 12496968 - 12497032
Alignment:
Q  10 atgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||| |||||  |||||||||||||||||||||| |||||||||||||||||    
T  12496968 atgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttc 12497032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-19
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 43949892 - 43949825
Alignment:
Q  8 acatgaacacccttt-attcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||| |||| | |||||||||||||| ||||||||||||||||||||||||||||||    
T  43949892 acatgaacacccttttattcctgcacctcattgtacaccccatgtattagggatattttggtaagttc 43949825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 1771356 - 1771290
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| |||||| ||||||||| |||||||||||| ||||||||| |||||||    
T  1771356 acatgaacaccctttattcctacaccccattgtacaccccatgtattagagatattttgataagttc 1771290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 25051703 - 25051769
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    |||||||||| |||||||| |||||| ||||||||| || |||||||||||||||||||||||||||    
T  25051703 acatgaacacactttattcctacaccccattgtacaccctatgtattagggatattttggtaagttc 25051769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 27316799 - 27316737
Alignment:
Q  12 gaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||| ||||||||||| |||| ||||||||||| ||||||||||||||||||    
T  27316799 gaacaccctttattcctacacctcattatacaccccatgtattaaggatattttggtaagttc 27316737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 28982912 - 28982846
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||  ||||||  |||||||||||||| ||||||||||||||||||||||||    
T  28982912 acatgaacaccctttatttctacaccctattgtacatcccatatattagggatattttggtaagttc 28982846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 33703151 - 33703217
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||  |||| || |||||||| ||||||||||||||||||||||||||||||    
T  33703151 acatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttc 33703217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 48463540 - 48463474
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    |||| |||||| ||||||| ||||  |||||||||||||||||||||||||||||||||||||||||    
T  48463540 acataaacaccatttattcatacatttcattgtacatcccatgtattagggatattttggtaagttc 48463474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 9e-17
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 39631110 - 39631177
Alignment:
Q  8 acatgaacacccttt-attcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    |||||||| |||||| |||| |||||||||||||||| | ||||||||||||||||||||||||||||    
T  39631110 acatgaacccccttttattcctacacctcattgtacacctcatgtattagggatattttggtaagttc 39631177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 23204868 - 23204802
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    |||||||||| |||||||| |||| | |||||||||||| |||||||||||||||||| ||||||||    
T  23204868 acatgaacactctttattcctacatcccattgtacatcctatgtattagggatatttttgtaagttc 23204802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 27550319 - 27550385
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||  |||||  ||||||||| | ||||||||||||||||||||||||||||    
T  27550319 acatgaacaccctttatttctacactccattgtacacctcatgtattagggatattttggtaagttc 27550385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 27864574 - 27864640
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    |||| |||||| ||||||| |||| | ||||||||| ||||||||||||||||||||||||||||||    
T  27864574 acataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttc 27864640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 35017743 - 35017808
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| || | ||||||||||| |||||||| |||||||||||||||||||||    
T  35017743 acatgaacaccctttattcctatatctcattgtacaccccatgta-tagggatattttggtaagttc 35017808  T

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Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 27893932 - 27893870
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    |||| |||||| ||||||| |||| | ||||||||| ||||||||||||||||||||||||||    
T  27893932 acataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaa 27893870  T

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Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 28988483 - 28988541
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttg 66  Q
    ||||||||||||||||||| |||||||||||||||| |||||| | |||||| ||||||    
T  28988483 acatgaacaccctttattcatacacctcattgtacaccccatgcactagggacattttg 28988541  T

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Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 41878416 - 41878482
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    |||||||||| |||||||| |||||||||||||||| || ||  ||||||||||||||| |||||||    
T  41878416 acatgaacactctttattcatacacctcattgtacaccctatccattagggatattttgataagttc 41878482  T

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Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 43514776 - 43514710
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| |||||  |||||||||   |||||||||||| |||||||||||||||    
T  43514776 acatgaacaccctttattcctacactccattgtacacttcatgtattagggttattttggtaagttc 43514710  T

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Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 43735752 - 43735818
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||| ||||||||| |||| |||||| ||||| ||||||||||| ||||||||| |||||||    
T  43735752 acatgaacatcctttattcctacatctcattatacattccatgtattagagatattttgataagttc 43735818  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 711970 - 712032
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    |||||||||||||||| || ||||||  |||||||| || ||| |||| ||||||||||||||    
T  711970 acatgaacaccctttaatcatacaccctattgtacaccctatgcattaaggatattttggtaa 712032  T

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Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 3756336 - 3756274
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    |||||||||||||||| || ||||||  |||||||| |||||| |||| ||||||||| ||||    
T  3756336 acatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttagtaa 3756274  T

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Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 17619242 - 17619180
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    ||||||||||| |||| || ||||||  |||||||| |||||| |||| ||||||||||||||    
T  17619242 acatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaa 17619180  T

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Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 23035990 - 23036056
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||  ||||||||| ||||||  |||||||| || || ||||||||||||||| ||||||||    
T  23035990 acatgaacctcctttattcctacaccctattgtacaccctatatattagggatatttttgtaagttc 23036056  T

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Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 31680917 - 31680978
Alignment:
Q  13 aacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    |||||| ||||||| ||||   ||||||||| ||| | ||||||||||||||||||||||||    
T  31680917 aacaccatttattcatacattccattgtacaccccgtatattagggatattttggtaagttc 31680978  T

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Target: scaffold0157 (Bit Score: 49; Significance: 1e-19; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 23509 - 23445
Alignment:
Q  10 atgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||| |||||  |||||||||||||||||||||| |||||||||||||||||    
T  23509 atgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttc 23445  T

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Target: scaffold0385 (Bit Score: 47; Significance: 1e-18; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 11261 - 11327
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    |||||||||| |||||||| |||||| ||||||||| ||||| ||||||||||||||||||||||||    
T  11261 acatgaacacactttattcatacaccccattgtacaccccatatattagggatattttggtaagttc 11327  T

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Target: scaffold0187 (Bit Score: 47; Significance: 1e-18; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 14278 - 14212
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||  |||||| |||||||||||| |||||||||||||||||| ||||||||    
T  14278 acatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaagttc 14212  T

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Target: scaffold0187; HSP #2
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 24606 - 24540
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||  |||||| |||||||||||| |||||||||||||||||| ||||||||    
T  24606 acatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaagttc 24540  T

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Target: scaffold0038 (Bit Score: 43; Significance: 4e-16; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 112665 - 112731
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaagttc 74  Q
    ||||||||||||||||||| ||||   ||||||||| || |||||||||||||||||||||||||||    
T  112665 acatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttc 112731  T

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Target: scaffold0003 (Bit Score: 39; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 45809 - 45747
Alignment:
Q  8 acatgaacaccctttattcgtacacctcattgtacatcccatgtattagggatattttggtaa 70  Q
    |||||||||||||||| || ||||||  ||||||||||| |||||||| ||||||||||||||    
T  45809 acatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaa 45747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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