View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1422-Insertion-4 (Length: 369)

Name: NF1422-Insertion-4
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1422-Insertion-4
NF1422-Insertion-4
[»] chr1 (1 HSPs)
chr1 (6-369)||(1238489-1238855)


Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 6 - 369
Target Start/End: Original strand, 1238489 - 1238855
Alignment:
Q  6 caataaaaaatgtcactttcttcgttaagaaggaagaccatctatcaagaaagaagtatggcataaaaaatgtccgtctctttgtaaaataaacaagatt 105  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1238489 caataaaaaatgtcactttctttgttaagaaggaagaccatctatcaagaaagaagtatgacataaaaaatgtccgtctctttgtaaaataaacaagatt 1238588  T
Q  106 aaacttctttttatttgttcacacttctctttataccaagtaaaaggtgaatgggctcttccaacattcaacttttatnnnnnnnnnttagagtagtaat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||    
T  1238589 aaacttctttttatttgttcacacttctctttataccaagtaaaaggtgaatgggctcttccaacattcaacttttataaaaaaaaattagagtagtaat 1238688  T
Q  206 aattctctaagaaacctttagtttactaaacttcatacaaatttcagacaaagtataatatttacacacaaaaagggactctgccagccattgaca---t 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||   |    
T  1238689 aattctctaagaaacctttagtttactaaacttcatacaaatttcagacaaagtataatatttacacacaaaaagggactctgtcagccattgacatact 1238788  T
Q  303 ataatgatacacattccttggttcatatccaagaattttgtttccttctcttctctagacttgaata 369  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1238789 ataatgatacacattccttggttcatatgcaagaattttgtttccttctcttctctagacttgaata 1238855  T

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