View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422-Insertion-6 (Length: 474)
Name: NF1422-Insertion-6
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422-Insertion-6 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 165 - 403
Target Start/End: Complemental strand, 54243915 - 54243677
Alignment:
| Q |
165 |
taggaaaaggggataatgttgcttcaaaaaaccatgaaatggaaaagataaaaagggaggaggaagacaatgggagaggaagagcgtgagattaaaatgc |
264 |
Q |
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| T |
54243915 |
taggaaaaggggataatgttgcttcaaaaaaccatgaaatggaaaagataaaaagggaggaggaagacaatgggagaggaagagcgtgagattaaaatgc |
54243816 |
T |
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| Q |
265 |
gtcatattgtttgattttgactcggatatcctctgcgcgtaactacataaattaattacctcaagtaggataggtcctcaataggcggcaaagttttttc |
364 |
Q |
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| T |
54243815 |
gtcatattgtttgattttgactcggatatcctctgcacgtaactacataaattaattacctcaagcaggataagtcctcaataggtggcaaagtttttgc |
54243716 |
T |
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| Q |
365 |
tcaagatatttgacattgttgcattcccccaacaagacc |
403 |
Q |
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| T |
54243715 |
tgaagatatttgacattgttgcattcccccaacaagacc |
54243677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 54244093 - 54243992
Alignment:
| Q |
8 |
gactttagcatagataatgtatcttccttgataattattagaatgctagtcaatgtcgttagacatgtacttctctgagagattttgagtgccctgctcg |
107 |
Q |
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| T |
54244093 |
gactttagcatagataatgtatcttccttgataattattagaatgctagtcaatgtcgttagacatgtacttctct--gagattttgagtgccctgctcg |
54243996 |
T |
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| Q |
108 |
aagt |
111 |
Q |
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|||| |
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| T |
54243995 |
aagt |
54243992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 412 - 474
Target Start/End: Complemental strand, 54243632 - 54243570
Alignment:
| Q |
412 |
ttctagattcgattgattccaactacaacatgttcttgttgttctaatttattattttgttga |
474 |
Q |
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| T |
54243632 |
ttctagattcgattgattccaactacaacatgttcttgttgttctaatttatgattttgttga |
54243570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 54244286 - 54244218
Alignment:
| Q |
8 |
gactttagcatagataatgtatcttccttgataattattagaatgctagtcaatgtcgttagacatgta |
76 |
Q |
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| T |
54244286 |
gactttagcatatataatgtatcttccttgataattatttgaatgctagtcaatgtcgttagtcatgta |
54244218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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