View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1422-Insertion-8 (Length: 522)

Name: NF1422-Insertion-8
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1422-Insertion-8
NF1422-Insertion-8
[»] chr6 (5 HSPs)
chr6 (80-450)||(748258-748630)
chr6 (441-522)||(749501-749582)
chr6 (17-88)||(747143-747215)
chr6 (432-502)||(28009151-28009221)
chr6 (432-502)||(17249469-17249539)
[»] chr1 (9 HSPs)
chr1 (432-511)||(31737486-31737565)
chr1 (435-511)||(28493498-28493574)
chr1 (446-511)||(22346759-22346824)
chr1 (435-511)||(19035343-19035419)
chr1 (432-511)||(1114032-1114111)
chr1 (441-511)||(868574-868644)
chr1 (453-502)||(25376016-25376065)
chr1 (433-502)||(18802928-18802996)
chr1 (441-505)||(4611059-4611123)
[»] chr7 (5 HSPs)
chr7 (435-511)||(21327005-21327081)
chr7 (435-505)||(982819-982889)
chr7 (432-503)||(45614006-45614077)
chr7 (432-502)||(5825146-5825216)
chr7 (432-502)||(45003061-45003131)
[»] scaffold0148 (1 HSPs)
scaffold0148 (432-511)||(33114-33193)
[»] chr8 (8 HSPs)
chr8 (432-511)||(18804477-18804556)
chr8 (435-511)||(18596766-18596842)
chr8 (432-511)||(500106-500185)
chr8 (435-511)||(22589503-22589579)
chr8 (472-511)||(1187396-1187435)
chr8 (432-483)||(39434559-39434610)
chr8 (432-502)||(38815167-38815237)
chr8 (469-509)||(25022015-25022055)
[»] chr4 (6 HSPs)
chr4 (432-502)||(12053340-12053410)
chr4 (441-511)||(30940905-30940975)
chr4 (441-511)||(40392727-40392797)
chr4 (432-500)||(50464460-50464528)
chr4 (432-502)||(55933624-55933694)
chr4 (446-511)||(600870-600935)
[»] scaffold0406 (1 HSPs)
scaffold0406 (432-511)||(6752-6831)
[»] chr2 (8 HSPs)
chr2 (432-511)||(13413215-13413294)
chr2 (432-502)||(27494184-27494254)
chr2 (446-503)||(20143123-20143180)
chr2 (432-511)||(3208408-3208487)
chr2 (432-511)||(17344502-17344581)
chr2 (441-511)||(4413239-4413309)
chr2 (435-511)||(15515314-15515390)
chr2 (434-502)||(30602362-30602430)
[»] chr3 (9 HSPs)
chr3 (432-502)||(39583393-39583463)
chr3 (435-511)||(32546659-32546735)
chr3 (441-511)||(44198631-44198701)
chr3 (432-502)||(26772631-26772701)
chr3 (441-500)||(3643028-3643087)
chr3 (432-511)||(21552528-21552607)
chr3 (446-511)||(44697-44762)
chr3 (432-505)||(13582380-13582453)
chr3 (441-502)||(25324903-25324963)
[»] scaffold0009 (1 HSPs)
scaffold0009 (432-511)||(102970-103049)
[»] scaffold0309 (1 HSPs)
scaffold0309 (435-511)||(5188-5264)
[»] chr5 (4 HSPs)
chr5 (432-500)||(23092694-23092762)
chr5 (432-502)||(430475-430545)
chr5 (432-502)||(35310321-35310391)
chr5 (432-505)||(15292189-15292262)


Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 80 - 450
Target Start/End: Original strand, 748258 - 748630
Alignment:
Q  80 caaactaaatatcatacactgccttaaactttttgacaaagtttgacttaaattttgtaaagctaacttgactcaacctattttcacccttaattggaat 179  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  748258 caaactaaatatcatacagtgccttaaactttttgacaaagtttgacttaaattttgtaaagctaacttgactcaacctattttcacccttatttggaat 748357  T
Q  180 caaaaacataatagaatattaagagctcatttgttatatctttttcatg--nnnnnnnnnntcatttttaaaacaaaaatctcttttagaagttttcttt 277  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||    
T  748358 caaaaccataatagaatattaagagctcatttgttatatctttttcatgaaaaaaaaaaaatcatttttaaaacaaaaatctcttttagaagttttcttt 748457  T
Q  278 cgttggttgaatattttccnnnnnnnnnnnngtaagaaagaaaaattagaagctaatattagtagcttatcgaaaaattatttattttatgtgatttttc 377  Q
    |||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  748458 cgttggttgaatattttccaaaaaaaaaaaagtaagaaagaaaaattagaagctaatattagtagcttatcgaaaaattatttattttatgtgatttttc 748557  T
Q  378 attttnnnnnnnctgatttttgttctagaaaacaaacacaaaacaatttgctattttacgagtattgattttg 450  Q
    |||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  748558 attttaaaaaaactgatttttgttctagaaaacaaacacaaaacaatttgctattttacgagtattgattttg 748630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 441 - 522
Target Start/End: Original strand, 749501 - 749582
Alignment:
Q  441 attgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattcaagtgaaaatctcttaattaa 522  Q
    ||||||||||||||||||||| | |||||||| |||||||||||| | |||||||||||||||||||||||||||| |||||    
T  749501 attgattttgccatccaaaaacgtctgacgacacagcttgttgtccgcttgccttctattcaagtgaaaatctcttgattaa 749582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 747143 - 747215
Alignment:
Q  17 tttttaaaatgctaacaagttctaccaagaggttaaaactta-gatttaaatataagtctattgcaaactaaa 88  Q
    ||||||||||||||||||||| |||||| ||||||||||||| |||||||| |||||||||||||||||||||    
T  747143 tttttaaaatgctaacaagttataccaaaaggttaaaacttaggatttaaaaataagtctattgcaaactaaa 747215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 432 - 502
Target Start/End: Original strand, 28009151 - 28009221
Alignment:
Q  432 tttacgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattca 502  Q
    ||||| || ||||||||||| |||||||||||||| |||||||||||| ||||| ||||||||||||||||    
T  28009151 tttaccagaattgattttgcaatccaaaaaggcctaacgacgcagcttattgtccgtttgccttctattca 28009221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 502
Target Start/End: Original strand, 17249469 - 17249539
Alignment:
Q  432 tttacgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattca 502  Q
    |||||||| |||| |||||||||||||||||| ||  || |||||||||||| | | |||||| |||||||    
T  17249469 tttacgaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattca 17249539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 432 - 511
Target Start/End: Original strand, 31737486 - 31737565
Alignment:
Q  432 tttacgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattcaagtgaaaat 511  Q
    |||||||| |||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||| ||||    
T  31737486 tttacgaggattgattttgccatccaaaaaggcttggcggcgcagcttgttgtctgtttgccttctattcaagtgtaaat 31737565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 435 - 511
Target Start/End: Original strand, 28493498 - 28493574
Alignment:
Q  435 acgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattcaagtgaaaat 511  Q
    ||||| ||||||||||||||||||||||| ||  || ||||| |||||||| ||||| |||||||||||||| ||||    
T  28493498 acgaggattgattttgccatccaaaaaggtctagcggcgcagtttgttgtccgtttgtcttctattcaagtgtaaat 28493574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 446 - 511
Target Start/End: Complemental strand, 22346824 - 22346759
Alignment:
Q  446 ttttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattcaagtgaaaat 511  Q
    |||||||||||||||||| ||  || |||||||||||||| | |||||||||||||||||| ||||    
T  22346824 ttttgccatccaaaaaggtctagcggcgcagcttgttgtccgcttgccttctattcaagtgtaaat 22346759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 435 - 511
Target Start/End: Complemental strand, 19035419 - 19035343
Alignment:
Q  435 acgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattcaagtgaaaat 511  Q
    ||||| |||| ||||| |||||||||||| ||  || |||||||||||||| | |||||||||||||||||| ||||    
T  19035419 acgaggattggttttgtcatccaaaaaggtctagcggcgcagcttgttgtccgattgccttctattcaagtgtaaat 19035343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 432 - 511
Target Start/End: Original strand, 1114032 - 1114111
Alignment:
Q  432 tttacgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattcaagtgaaaat 511  Q
    |||||||| |||| |||||||||||||||||| || ||| | |||||||||| | | ||| |||||||||||||| ||||    
T  1114032 tttacgaggattggttttgccatccaaaaaggtctaacggcacagcttgttgcccgcttggcttctattcaagtgtaaat 1114111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 511
Target Start/End: Original strand, 868574 - 868644
Alignment:
Q  441 attgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattcaagtgaaaat 511  Q
    |||| |||||||||||||||||| ||  || |||||||||||| | | |||||||||||||||||| ||||    
T  868574 attggttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgccttctattcaagtgtaaat 868644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 453 - 502
Target Start/End: Original strand, 25376016 - 25376065
Alignment:
Q  453 atccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattca 502  Q
    |||||||||||||| |||||| | |||||||| |||||||||||||||||    
T  25376016 atccaaaaaggcctaacgacgtaacttgttgtttgtttgccttctattca 25376065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 502
Target Start/End: Complemental strand, 18802996 - 18802928
Alignment:
Q  433 ttacgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattca 502  Q
    ||||||| ||||||||||| |||||||||| |  | |||| |||||| ||||||||||| ||||||||||    
T  18802996 ttacgagaattgattttgcaatccaaaaagtctag-cgacacagcttattgtctgtttgtcttctattca 18802928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 505
Target Start/End: Complemental strand, 4611123 - 4611059
Alignment:
Q  441 attgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattcaagt 505  Q
    |||||||||| |||||||||||| || ||  | |||||||||||| | ||||||| |||||||||    
T  4611123 attgattttgtcatccaaaaaggtctaacagcacagcttgttgtccgcttgccttttattcaagt 4611059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 435 - 511
Target Start/End: Original strand, 21327005 - 21327081
Alignment:
Q  435 acgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattcaagtgaaaat 511  Q
    ||||| ||||||||||||||||||||||| || ||| |||||||||||||||| |||||||||||||||||| ||||    
T  21327005 acgaggattgattttgccatccaaaaaggtctaacggcgcagcttgttgtctgcttgccttctattcaagtgtaaat 21327081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 435 - 505
Target Start/End: Complemental strand, 982889 - 982819
Alignment:
Q  435 acgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattcaagt 505  Q
    ||||| |||| | |||||||||||||||| ||  |||| |||||||||| |||||||||||||||||||||    
T  982889 acgaggattggtattgccatccaaaaaggtctagcgacacagcttgttgcctgtttgccttctattcaagt 982819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 432 - 503
Target Start/End: Original strand, 45614006 - 45614077
Alignment:
Q  432 tttacgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattcaa 503  Q
    |||||||| |||| ||||||||||| |||||| ||  || |||||||||||||| | |||||||||||||||    
T  45614006 tttacgaggattggttttgccatccgaaaaggtctagcggcgcagcttgttgtccgcttgccttctattcaa 45614077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 502
Target Start/End: Complemental strand, 5825216 - 5825146
Alignment:
Q  432 tttacgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattca 502  Q
    |||||||| |||| |||||||||| ||||||| || ||| |||||||||||  ||| |||||| |||||||    
T  5825216 tttacgaggattggttttgccatcgaaaaaggtcttacggcgcagcttgttacctgcttgcctcctattca 5825146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 502
Target Start/End: Original strand, 45003061 - 45003131
Alignment:
Q  432 tttacgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattca 502  Q
    |||||||  ||||||||||||||||||||||| ||  || |||||||| ||||| | |||||| |||||||    
T  45003061 tttacgaagattgattttgccatccaaaaaggtctagcggcgcagcttattgtccgcttgcctcctattca 45003131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 432 - 511
Target Start/End: Complemental strand, 33193 - 33114
Alignment:
Q  432 tttacgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattcaagtgaaaat 511  Q
    |||||||| |||||||||| ||||||||||||| || ||  ||||||||||| ||| |||||||||||||||||| ||||    
T  33193 tttacgaggattgattttgtcatccaaaaaggcttggcggtgcagcttgttgcctgcttgccttctattcaagtgtaaat 33114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 432 - 511
Target Start/End: Complemental strand, 18804556 - 18804477
Alignment:
Q  432 tttacgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattcaagtgaaaat 511  Q
    |||||||| |||| |||||||||||||||||| ||  || |||||||||||| ||| |||||||||||||||||| ||||    
T  18804556 tttacgaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcctgcttgccttctattcaagtgtaaat 18804477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 435 - 511
Target Start/End: Original strand, 18596766 - 18596842
Alignment:
Q  435 acgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattcaagtgaaaat 511  Q
    ||||| |||| ||||||||||| |||||| ||  || |||||||||||||| | |||||||||||||||||| ||||    
T  18596766 acgaggattggttttgccatccgaaaaggtctagcggcgcagcttgttgtcagcttgccttctattcaagtgtaaat 18596842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 432 - 511
Target Start/End: Complemental strand, 500185 - 500106
Alignment:
Q  432 tttacgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattcaagtgaaaat 511  Q
    |||||||| ||||||||| |||| ||||||||| ||||| | |||||| ||| | | |||||||||||||||||| ||||    
T  500185 tttacgaggattgattttaccattcaaaaaggcttgacggcacagcttattgcccgcttgccttctattcaagtgtaaat 500106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 511
Target Start/End: Original strand, 22589503 - 22589579
Alignment:
Q  435 acgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattcaagtgaaaat 511  Q
    ||||| |||| |||||||||||||||||| ||  || |||||||||||| | | ||||||| |||||||||| ||||    
T  22589503 acgaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgccttttattcaagtgtaaat 22589579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 511
Target Start/End: Original strand, 1187396 - 1187435
Alignment:
Q  472 cgcagcttgttgtctgtttgccttctattcaagtgaaaat 511  Q
    |||||||||||||||| |||||||||||||||||| ||||    
T  1187396 cgcagcttgttgtctgcttgccttctattcaagtgtaaat 1187435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 483
Target Start/End: Complemental strand, 39434610 - 39434559
Alignment:
Q  432 tttacgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttg 483  Q
    |||||||| ||||||||||||||||||||||| ||  || ||||||||||||    
T  39434610 tttacgaggattgattttgccatccaaaaaggtctagcggcgcagcttgttg 39434559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 502
Target Start/End: Complemental strand, 38815237 - 38815167
Alignment:
Q  432 tttacgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattca 502  Q
    |||||||| |||| |||| |||||||||||||| |  || |||||||||||| | | ||||||||||||||    
T  38815237 tttacgaggattggtttttccatccaaaaaggcttagcggcgcagcttgttgcccgcttgccttctattca 38815167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 509
Target Start/End: Original strand, 25022015 - 25022055
Alignment:
Q  469 cgacgcagcttgttgtctgtttgccttctattcaagtgaaa 509  Q
    ||||| |||||||||| ||||||||||||||||| ||||||    
T  25022015 cgacgtagcttgttgtttgtttgccttctattcatgtgaaa 25022055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 432 - 502
Target Start/End: Complemental strand, 12053410 - 12053340
Alignment:
Q  432 tttacgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattca 502  Q
    |||||||| |||| |||||||||| |||||||||   ||||||||||||||||||| ||||||||||||||    
T  12053410 tttacgagaattggttttgccatcgaaaaaggccgagcgacgcagcttgttgtctgcttgccttctattca 12053340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 441 - 511
Target Start/End: Original strand, 30940905 - 30940975
Alignment:
Q  441 attgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattcaagtgaaaat 511  Q
    ||||||||||||||||||||||| ||  ||||||||||||||| | | |||||||||||||||||| ||||    
T  30940905 attgattttgccatccaaaaaggtctagcgacgcagcttgttgcccgcttgccttctattcaagtgtaaat 30940975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 441 - 511
Target Start/End: Original strand, 40392727 - 40392797
Alignment:
Q  441 attgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattcaagtgaaaat 511  Q
    |||| |||||||||||||||||| ||  || |||||||||||||| | |||||||||||||||||| ||||    
T  40392727 attggttttgccatccaaaaaggtctagcggcgcagcttgttgtccgcttgccttctattcaagtgtaaat 40392797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 500
Target Start/End: Original strand, 50464460 - 50464528
Alignment:
Q  432 tttacgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctatt 500  Q
    |||||||| ||| |||||||||||||||||| |||  || |||||||||||||| | ||||||||||||    
T  50464460 tttacgaggatttattttgccatccaaaaagacctagcggcgcagcttgttgtccgcttgccttctatt 50464528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 502
Target Start/End: Original strand, 55933624 - 55933694
Alignment:
Q  432 tttacgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattca 502  Q
    |||||||  ||||||||||||||||||||| | ||  |||||||| |||||||| | |||||| |||||||    
T  55933624 tttacgatgattgattttgccatccaaaaaagtctagcgacgcagtttgttgtccgcttgcctcctattca 55933694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 511
Target Start/End: Original strand, 600870 - 600935
Alignment:
Q  446 ttttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattcaagtgaaaat 511  Q
    |||||||||||||||| |  |  ||||| ||||||||||| | |||||||||||||||||| ||||    
T  600870 ttttgccatccaaaaatgtatagcgacgtagcttgttgtccgcttgccttctattcaagtgtaaat 600935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 432 - 511
Target Start/End: Complemental strand, 6831 - 6752
Alignment:
Q  432 tttacgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattcaagtgaaaat 511  Q
    |||||||| |||| |||||||||||||||||| ||  || |||||||||||| | | |||||||||||||||||| ||||    
T  6831 tttacgagaattggttttgccatccaaaaaggtctagcgccgcagcttgttgcccgcttgccttctattcaagtgtaaat 6752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 432 - 511
Target Start/End: Complemental strand, 13413294 - 13413215
Alignment:
Q  432 tttacgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattcaagtgaaaat 511  Q
    |||| ||| |||| ||||||||||||||||||||| ||| | |||||||||||| | ||| |||||||||||||| ||||    
T  13413294 tttatgagaattggttttgccatccaaaaaggcctaacggctcagcttgttgtccgcttgtcttctattcaagtgtaaat 13413215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 432 - 502
Target Start/End: Complemental strand, 27494254 - 27494184
Alignment:
Q  432 tttacgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattca 502  Q
    ||||||| ||||| |||||||||||||||||| || ||| |||||||||||| ||| |||||| |||||||    
T  27494254 tttacgaatattggttttgccatccaaaaaggtctaacggcgcagcttgttgcctgcttgcctcctattca 27494184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 446 - 503
Target Start/End: Original strand, 20143123 - 20143180
Alignment:
Q  446 ttttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattcaa 503  Q
    |||||||||||||||||| ||  || |||| |||||||||||||||||||||||||||    
T  20143123 ttttgccatccaaaaaggtctagcggcgcaacttgttgtctgtttgccttctattcaa 20143180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 432 - 511
Target Start/End: Original strand, 3208408 - 3208487
Alignment:
Q  432 tttacgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattcaagtgaaaat 511  Q
    |||||||| |||| ||||||||||||||||||  |  || |||||||||||| | | |||||||||||||||||| ||||    
T  3208408 tttacgaggattggttttgccatccaaaaaggtttagcggcgcagcttgttgcccgcttgccttctattcaagtgtaaat 3208487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 432 - 511
Target Start/End: Complemental strand, 17344581 - 17344502
Alignment:
Q  432 tttacgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattcaagtgaaaat 511  Q
    |||||||| ||||||||| | ||||||||||| ||  || |||||||||||| | | |||||||||||||||||| ||||    
T  17344581 tttacgaggattgatttttcgatccaaaaaggtctatcggcgcagcttgttgccggcttgccttctattcaagtgtaaat 17344502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 511
Target Start/End: Original strand, 4413239 - 4413309
Alignment:
Q  441 attgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattcaagtgaaaat 511  Q
    ||||||||||||||||||||||| ||  || |||||||||||| |   |||||||||||||||||| ||||    
T  4413239 attgattttgccatccaaaaaggtctagcggcgcagcttgttgcccacttgccttctattcaagtgtaaat 4413309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 511
Target Start/End: Original strand, 15515314 - 15515390
Alignment:
Q  435 acgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattcaagtgaaaat 511  Q
    ||||| |||| |||||||||||||||| | ||  || ||||| |||||| |||||||||||||| ||||||| ||||    
T  15515314 acgaggattggttttgccatccaaaaaagtctagcggcgcagtttgttgcctgtttgccttctactcaagtgtaaat 15515390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 502
Target Start/End: Complemental strand, 30602430 - 30602362
Alignment:
Q  434 tacgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattca 502  Q
    |||||| |||| |||||||||||||||||||||  |  |||||||||||| | |  |||||||||||||    
T  30602430 tacgaggattggttttgccatccaaaaaggcctagcagcgcagcttgttgcccgcatgccttctattca 30602362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 432 - 502
Target Start/End: Original strand, 39583393 - 39583463
Alignment:
Q  432 tttacgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattca 502  Q
    |||||||| ||||||||||||||||||||||| ||  || |||| ||||||||||| |||| |||||||||    
T  39583393 tttacgaggattgattttgccatccaaaaaggtctagcggcgcaacttgttgtctgcttgctttctattca 39583463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 435 - 511
Target Start/End: Complemental strand, 32546735 - 32546659
Alignment:
Q  435 acgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattcaagtgaaaat 511  Q
    ||||| |||| |||||||||||||||||| ||  || |||||||||||| | | |||||||||||||||||| ||||    
T  32546735 acgaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgccttctattcaagtgtaaat 32546659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 511
Target Start/End: Complemental strand, 44198701 - 44198631
Alignment:
Q  441 attgattttgccatccaaaaaggcctga-cgacgcagcttgttgtctgtttgccttctattcaagtgaaaat 511  Q
    |||||||||||||||||||||||  ||| |||| |||||||||||| | |||||||||||||||||| ||||    
T  44198701 attgattttgccatccaaaaaggt-tgagcgacacagcttgttgtccgcttgccttctattcaagtgtaaat 44198631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 502
Target Start/End: Complemental strand, 26772701 - 26772631
Alignment:
Q  432 tttacgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattca 502  Q
    |||||||| ||||||||||||||||||||||| ||  || |||||||||||| | | |||||| |||||||    
T  26772701 tttacgaggattgattttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattca 26772631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 500
Target Start/End: Complemental strand, 3643087 - 3643028
Alignment:
Q  441 attgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctatt 500  Q
    |||||||||| ||||| ||||||||| |||||||||||| ||| | | ||||||||||||    
T  3643087 attgattttgtcatccgaaaaggcctaacgacgcagcttattgcccgcttgccttctatt 3643028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 511
Target Start/End: Complemental strand, 21552607 - 21552528
Alignment:
Q  432 tttacgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattcaagtgaaaat 511  Q
    ||||| || |||| ||||| ||||||||||| | ||||| |||| ||||||| | |||| ||||||||||||||| ||||    
T  21552607 tttacaagaattggttttgacatccaaaaagacttgacggcgcaacttgttgcccgtttaccttctattcaagtgtaaat 21552528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 511
Target Start/End: Complemental strand, 44762 - 44697
Alignment:
Q  446 ttttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattcaagtgaaaat 511  Q
    |||||||||||||||||| ||  || ||||| |||||| | | |||||||||||||||||| ||||    
T  44762 ttttgccatccaaaaaggtctagcggcgcagtttgttgcccgcttgccttctattcaagtgtaaat 44697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 505
Target Start/End: Complemental strand, 13582453 - 13582380
Alignment:
Q  432 tttacgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattcaagt 505  Q
    |||||||  |||||||| |||||||||||||||||  |||||| | || ||| | | |||||||||||||||||    
T  13582453 tttacgaagattgatttagccatccaaaaaggcctagcgacgctgtttattgcccgcttgccttctattcaagt 13582380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 502
Target Start/End: Complemental strand, 25324963 - 25324903
Alignment:
Q  441 attgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattca 502  Q
    |||| ||||||||||||||||  | | |||||||| ||| ||||||||||||||||||||||    
T  25324963 attgcttttgccatccaaaaaaac-taacgacgcaccttattgtctgtttgccttctattca 25324903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 432 - 511
Target Start/End: Complemental strand, 103049 - 102970
Alignment:
Q  432 tttacgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattcaagtgaaaat 511  Q
    |||||||| |||| |||||||||||||||||| ||  || |||| ||||||| | | |||||||||||||||||| ||||    
T  103049 tttacgaggattggttttgccatccaaaaaggtctagcggcgcaacttgttgcccgcttgccttctattcaagtgtaaat 102970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0309 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 511
Target Start/End: Complemental strand, 5264 - 5188
Alignment:
Q  435 acgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattcaagtgaaaat 511  Q
    ||||| ||||| ||||||||||||||||| ||  || |||||||||||| | | |||| ||||||||||||| ||||    
T  5264 acgaggattgactttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcattctattcaagtgtaaat 5188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 500
Target Start/End: Complemental strand, 23092762 - 23092694
Alignment:
Q  432 tttacgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctatt 500  Q
    |||||||| |||||||||| ||||||| |||| ||  | |||||| |||||||||| ||||||||||||    
T  23092762 tttacgaggattgattttgtcatccaacaaggtctagcaacgcagtttgttgtctgcttgccttctatt 23092694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 502
Target Start/End: Complemental strand, 430545 - 430475
Alignment:
Q  432 tttacgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattca 502  Q
    |||||||| ||||||| ||||||||||||||| ||  ||  ||||||||| ||||| |||||| |||||||    
T  430545 tttacgaggattgattatgccatccaaaaaggtctatcggtgcagcttgtngtctgcttgcctcctattca 430475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 502
Target Start/End: Complemental strand, 35310391 - 35310321
Alignment:
Q  432 tttacgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattca 502  Q
    |||||||| |||| |||||||||||||| |||  | |||||||||||||||| | | |||||| |||||||    
T  35310391 tttacgagaattggttttgccatccaaagaggtttaacgacgcagcttgttgcccgcttgcctcctattca 35310321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 505
Target Start/End: Original strand, 15292189 - 15292262
Alignment:
Q  432 tttacgagtattgattttgccatccaaaaaggcctgacgacgcagcttgttgtctgtttgccttctattcaagt 505  Q
    |||| ||| ||||||||||||||||||||| || || || ||||| |||||| |   |||||||||||||||||    
T  15292189 tttatgaggattgattttgccatccaaaaaagcttggcggcgcagtttgttgcccacttgccttctattcaagt 15292262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University