View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1422-Insertion-9 (Length: 824)

Name: NF1422-Insertion-9
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1422-Insertion-9
NF1422-Insertion-9
[»] chr7 (16 HSPs)
chr7 (244-550)||(27324176-27324476)
chr7 (18-224)||(9942772-9942978)
chr7 (14-224)||(1031948-1032158)
chr7 (14-196)||(40871480-40871662)
chr7 (13-185)||(40858195-40858367)
chr7 (14-224)||(17194058-17194267)
chr7 (14-218)||(19323948-19324152)
chr7 (14-218)||(32575193-32575397)
chr7 (14-218)||(38141963-38142167)
chr7 (24-101)||(8123965-8124042)
chr7 (14-218)||(29626637-29626841)
chr7 (14-129)||(12623082-12623197)
chr7 (14-213)||(18299621-18299820)
chr7 (14-218)||(15669415-15669619)
chr7 (594-679)||(27324046-27324131)
chr7 (14-218)||(29126031-29126233)
[»] chr4 (19 HSPs)
chr4 (244-550)||(28358971-28359271)
chr4 (14-224)||(42718294-42718504)
chr4 (14-224)||(36651907-36652117)
chr4 (14-224)||(43499021-43499231)
chr4 (14-224)||(7743296-7743506)
chr4 (14-224)||(39059887-39060097)
chr4 (14-224)||(9896672-9896882)
chr4 (14-224)||(37870824-37871034)
chr4 (13-185)||(40850567-40850739)
chr4 (13-173)||(47590630-47590790)
chr4 (23-185)||(56024798-56024960)
chr4 (13-184)||(48640488-48640659)
chr4 (80-165)||(23106853-23106938)
chr4 (50-204)||(50771543-50771697)
chr4 (594-679)||(28358841-28358926)
chr4 (14-218)||(40345959-40346163)
chr4 (161-224)||(23108098-23108161)
chr4 (14-213)||(30598406-30598605)
chr4 (603-643)||(43457191-43457231)
[»] chr5 (7 HSPs)
chr5 (14-224)||(19021114-19021324)
chr5 (14-224)||(22639283-22639493)
chr5 (13-198)||(26369110-26369295)
chr5 (14-203)||(22580567-22580759)
chr5 (14-204)||(25982354-25982544)
chr5 (14-213)||(40973447-40973646)
chr5 (14-46)||(6536979-6537011)
[»] chr2 (10 HSPs)
chr2 (14-224)||(6764144-6764354)
chr2 (14-223)||(12410512-12410721)
chr2 (14-224)||(37647689-37647899)
chr2 (14-221)||(12422574-12422781)
chr2 (14-224)||(27271372-27271573)
chr2 (14-224)||(11031502-11031712)
chr2 (17-182)||(2380800-2380965)
chr2 (13-107)||(3044171-3044265)
chr2 (13-148)||(7901139-7901278)
chr2 (23-95)||(34394666-34394738)
[»] chr8 (9 HSPs)
chr8 (18-224)||(8444430-8444636)
chr8 (16-223)||(24503779-24503986)
chr8 (14-217)||(45540046-45540249)
chr8 (14-224)||(4034467-4034677)
chr8 (14-224)||(13089953-13090163)
chr8 (13-185)||(9932271-9932443)
chr8 (13-173)||(25582756-25582916)
chr8 (13-185)||(13781019-13781190)
chr8 (13-44)||(10230280-10230311)
[»] scaffold0300 (1 HSPs)
scaffold0300 (14-224)||(9301-9511)
[»] chr1 (14 HSPs)
chr1 (14-224)||(4532253-4532463)
chr1 (15-224)||(33936151-33936360)
chr1 (14-218)||(31911724-31911928)
chr1 (14-224)||(34549075-34549285)
chr1 (14-224)||(19228065-19228274)
chr1 (13-185)||(20505398-20505570)
chr1 (17-123)||(51534647-51534753)
chr1 (13-173)||(26676664-26676824)
chr1 (13-185)||(33676671-33676843)
chr1 (13-163)||(28756653-28756803)
chr1 (14-198)||(27007563-27007747)
chr1 (13-185)||(46731822-46731994)
chr1 (24-218)||(15759681-15759875)
chr1 (14-92)||(52022615-52022693)
[»] chr6 (7 HSPs)
chr6 (244-550)||(3500408-3500710)
chr6 (14-220)||(18972786-18972993)
chr6 (14-224)||(12912426-12912636)
chr6 (14-220)||(24393632-24393838)
chr6 (13-173)||(6029095-6029255)
chr6 (14-218)||(7093646-7093850)
chr6 (594-647)||(3500311-3500364)
[»] scaffold0041 (1 HSPs)
scaffold0041 (14-196)||(94620-94802)
[»] scaffold0074 (1 HSPs)
scaffold0074 (14-220)||(23515-23722)
[»] chr3 (4 HSPs)
chr3 (13-185)||(10436606-10436778)
chr3 (13-185)||(20406132-20406304)
chr3 (13-188)||(15029831-15030006)
chr3 (50-218)||(53459119-53459287)
[»] scaffold0432 (1 HSPs)
scaffold0432 (14-213)||(8829-9028)
[»] scaffold0037 (1 HSPs)
scaffold0037 (14-48)||(865-899)


Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 244 - 550
Target Start/End: Complemental strand, 27324476 - 27324176
Alignment:
Q  244 taaaacaaaaacctcaaaatccacctgatacataattcctttgctgtctgcatctacaccatcttcacacaaccatggatgatgatttccaccaaccaac 343  Q
    |||||||| |||||||||||||||||||||||| ||||||||| || ||||||||||||  |||||||||| ||||||||||||||||||||||||||||    
T  27324476 taaaacaacaacctcaaaatccacctgatacatgattcctttgttgcctgcatctacactgtcttcacacacccatggatgatgatttccaccaaccaac 27324377  T
Q  344 caatatgaaccaccatggacgatgcaattgggaactatcaatgtgaaacc-tctcaaatgcaaacaccaaagcatataagtttttcttatttatttttcc 442  Q
     ||||||||||| |||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27324376 -aatatgaaccatcatggaggatgcaattgggaactatcagtgtgaaaccctctcaaatgcaaacaccaaagcatataagtttttcttatttattttttc 27324278  T
Q  443 cattgttgattttgttgtgctttaaaatcgatcaaatcaagcaccaaagcaaatgcttcgtctaattaaatatctcttagttatttgcaattgaaaagca 542  Q
    |||||||||||||||| | |||||||||| |||||| |||||||||||||  ||||||||||||||||||| ||||    ||||||||||||||||| ||    
T  27324277 cattgttgattttgtttttctttaaaatcaatcaaagcaagcaccaaagc--atgcttcgtctaattaaatctctc----ttatttgcaattgaaaaaca 27324184  T
Q  543 ctattccc 550  Q
    ||||||||    
T  27324183 ctattccc 27324176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 9942772 - 9942978
Alignment:
Q  18 accatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaacttc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9942772 accatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccaccagtatgattggagcttaactttatctaacaattgattaaaagaagcttc 9942871  T
Q  118 tttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaagccg 217  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||| ||||||    
T  9942872 tttttggtgaaatatgcaagcatttctttcaagccagatcacccacacacaagatagtcaaataagattaagagttgagtgtttgctgtcagagaagccg 9942971  T
Q  218 ctaaagg 224  Q
    |||||||    
T  9942972 ctaaagg 9942978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 1032158 - 1031948
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    ||||||||||||| |||||||||||||||||||    |||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||     
T  1032158 aaccaccatgaatagtaggagaaaacaaaactattgtggttcgctttcagccaccagtatgattgaagcttaactttatctaataattgattaaaagaag 1032059  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    ||||||||| ||||||||| ||||| || ||||||||  ||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||| ||    
T  1032058 cttctttttggtgaaatattcgagcgttcctttcaagctagatcacccacacacaatatagccaaataagattcagagttgagcgtttgttgttagagaa 1031959  T
Q  214 gccgctaaagg 224  Q
    |||||||||||    
T  1031958 gccgctaaagg 1031948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 14 - 196
Target Start/End: Original strand, 40871480 - 40871662
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    ||||||||||||||||||||||||||||||||||| || || || |||||||| ||||| ||||| ||||| |||||||||| ||||||||||||||||     
T  40871480 aaccaccatgaatggtaggagaaaacaaaactaggacgatttgccttcagccaccagtaagattgaagcttgactttatctagcaattgattaaaagaag 40871579  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgag 196  Q
    ||||||||| |||||| || ||| |||| |||||||| || |||||||||||| | |||||||||||||| ||||||| ||||    
T  40871580 cttctttttggtgaaagatccgatcattcctttcaagccaaatcacccacacaaatgatagccaaataaggttaagagctgag 40871662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 40858195 - 40858367
Alignment:
Q  13 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 112  Q
    ||||||| | |||||| ||||||||||||||||||| || || ||||||||||||||||| ||||| |||||||||||||||| |||||||||||  |||    
T  40858195 taaccactaagaatggaaggagaaaacaaaactaggacgattagctttcagccatcagtaagattgaagcttaactttatctagcaattgattaatcgaa 40858294  T
Q  113 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 185  Q
     ||||| ||| |||||| |  ||||||||  ||||||| || ||||||||||||||||||| ||| |||||||    
T  40858295 gcttctgtttggtgaaaaacccgagcattcatttcaagccaaatcacccacacacaagataaccatataagat 40858367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 17194058 - 17194267
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    |||||||| ||||||||||||| |||||||||| | || ||  |||||||||| ||||  ||||| |||||||||||||||| ||||||||||||||||     
T  17194058 aaccaccacgaatggtaggagagaacaaaactatgacgattttctttcagccaccagtgagattgaagcttaactttatctagcaattgattaaaagaag 17194157  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    ||| || || || ||| ||   |||||| |||||||| || ||||| ||||||||||||| ||||||||| ||||||||| || || | |||||||||||    
T  17194158 ctttttattggt-aaagatttaagcattcctttcaagtcaaatcactcacacacaagataaccaaataaggttaagagttaagtgtctactgttagaaaa 17194256  T
Q  214 gccgctaaagg 224  Q
     ||||||||||    
T  17194257 accgctaaagg 17194267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 19324152 - 19323948
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    ||||||||  |||||||||| ||| ||||  |||| ||||||||||||||||| | ||||||||| || |||| ||||||||  |||||||| || ||      
T  19324152 aaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccggtatgattgaagtttaattttatctagtaattgattgaacgagg 19324053  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    | |||||||  ||||| |  ||||| |||||||| |  || ||||||||||||||||| ||||| || || |||| ||||||||| ||||| || |||||    
T  19324052 cctctttttgatgaaagacccgagcgtttctttctatccaaatcacccacacacaagaaagccatatgaggttaaaagttgagcggttgcttttggaaaa 19323953  T
Q  214 gccgc 218  Q
     ||||    
T  19323952 cccgc 19323948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 32575397 - 32575193
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    ||||||||  |||||||||| ||| ||||  |||| ||||||||||||||||| ||||||||||| || |||| ||||||||  |||||||| || ||      
T  32575397 aaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccagtatgattgaagtttaattttatctagtaattgattgaacgagg 32575298  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    | |||||||  ||||| |  ||||  |||||||| |  || ||||||||||||||||| ||||| || ||||||| || |||||| ||||| || |||||    
T  32575297 cctctttttgatgaaagacccgagtgtttctttctatccaaatcacccacacacaagaaagccatatgagattaaaagctgagcgattgcttttggaaaa 32575198  T
Q  214 gccgc 218  Q
     ||||    
T  32575197 cccgc 32575193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 38142167 - 38141963
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    ||||||||  |||||||||| ||| ||||  |||| ||||||||||||||||| ||||||||||| || |||| ||||||||| |||||| | || ||      
T  38142167 aaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccagtatgattgaagtttaattttatctaataattgaatgaacgagg 38142068  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    | |||||||  ||||| |  ||||  |||||||| |  || ||||||||||||||||| ||||| || ||||||| || |||||| ||||| || |||||    
T  38142067 cctctttttgatgaaagacccgagtgtttctttctatccaaatcacccacacacaagaaagccatatgagattaaaagctgagcggttgcttttggaaaa 38141968  T
Q  214 gccgc 218  Q
     ||||    
T  38141967 cccgc 38141963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 8124042 - 8123965
Alignment:
Q  24 aatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaatt 101  Q
    ||||||||||||||||||||||||| || || ||||||| ||| ||||| ||||| ||||||||||||||||||||||    
T  8124042 aatggtaggagaaaacaaaactaggacgattagctttcaaccaccagtaagattgaagcttaactttatctaacaatt 8123965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 29626841 - 29626637
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    ||||||||  |||||||||| ||| ||||  |||| |||||||||||||||||||||||| |||| || |||| |||||| |  |||||| | || ||      
T  29626841 aaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccatcagtattattgaagtttaattttatcaagtaattgaatgaacgagg 29626742  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    | |||||||  ||||| || ||||  |||||||| |  || ||||||||||||||||| ||||| || ||||||| || |||||| ||||| || |||||    
T  29626741 cctctttttgatgaaagatccgagtgtttctttctatccaaatcacccacacacaagaaagccatatgagattaaaagctgagcggttgcttttggaaaa 29626642  T
Q  214 gccgc 218  Q
     ||||    
T  29626641 cccgc 29626637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 12623082 - 12623197
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    ||||| |||||||||||| |||||||||||||||| || || || ||| ||||  |||| ||||| ||||| |||||||||| |||||| |||||||||     
T  12623082 aaccatcatgaatggtagaagaaaacaaaactaggacgatttgccttcggccacaagtaagattgaagcttgactttatctagcaattgtttaaaagaag 12623181  T
Q  114 cttctttttagtgaaa 129  Q
    | ||||||| ||||||    
T  12623182 cctctttttggtgaaa 12623197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 18299621 - 18299820
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    ||||||||  |||||||||| ||| |||| ||||| |||||| |||||||||| ||||||||||| || |||| ||||||||  |||||||  || ||      
T  18299621 aaccaccacaaatggtaggaaaaagcaaagctaggacggttccctttcagccaccagtatgattgaagtttaattttatctagtaattgatggaacgagg 18299720  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    | |||||||  ||||| |  |||||  ||||||| |  || ||||||||||||||||| ||||| || ||||||| || |||||| ||||| || |||||    
T  18299721 cctctttttgatgaaagacccgagcgattctttctatccaaatcacccacacacaagaaagccatatgagattaaaagctgagcggttgcttttggaaaa 18299820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 15669619 - 15669415
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    ||||||||  |||||||||| ||| ||||  |||| ||||||||||||||||| ||||||||||| || |||| ||||||||  |||||||| ||  |      
T  15669619 aaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccagtatgattgaagtttaattttatctagtaattgattgaacaagg 15669520  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    | |||||||   |||| |  ||||  |||||||| |   | ||||||||||||||||| ||||| || ||||||| ||||||||| ||||| || |||||    
T  15669519 cctctttttgaagaaagacccgagtgtttctttctatcgaaatcacccacacacaagaaagccatatgagattaaaagttgagcggttgcttttggaaaa 15669420  T
Q  214 gccgc 218  Q
     ||||    
T  15669419 cccgc 15669415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 594 - 679
Target Start/End: Complemental strand, 27324131 - 27324046
Alignment:
Q  594 cttatgtccgaacaattgaaaagtcagaattgcaaccaaatccattaaatcaagnnnnnnnnntcttaaatttgaaaactagaatt 679  Q
    |||||||||||||||||||||||  ||||||||| |||||||||||||||||||         |||||| ||||||||||||||||    
T  27324131 cttatgtccgaacaattgaaaagctagaattgcacccaaatccattaaatcaagaaaaaacaatcttaagtttgaaaactagaatt 27324046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 29126031 - 29126233
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    ||||||||  |||||||||| ||| ||||  |||| ||||||||||||||||| ||||||||||| |  |||| ||||||||  |||||||| || ||      
T  29126031 aaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccagtatgattgaaatttaattttatctagtaattgattgaacgagg 29126130  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    | |||||||  ||||| |  ||||  |||||||| |  || ||||||  ||||||||| ||||| || ||||||| || |||||| ||||| || |||||    
T  29126131 cctctttttgatgaaagacccgagtgtttctttctatccaaatcacc--cacacaagaaagccatatgagattaaaagctgagcggttgcttttggaaaa 29126228  T
Q  214 gccgc 218  Q
     ||||    
T  29126229 cccgc 29126233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 244 - 550
Target Start/End: Complemental strand, 28359271 - 28358971
Alignment:
Q  244 taaaacaaaaacctcaaaatccacctgatacataattcctttgctgtctgcatctacaccatcttcacacaaccatggatgatgatttccaccaaccaac 343  Q
    |||||||| |||||||||||||||||||||||| ||||||||| || |||||||||||   |||||||||| ||||||||||||||||||||||||||||    
T  28359271 taaaacaacaacctcaaaatccacctgatacatgattcctttgttgcctgcatctacattgtcttcacacacccatggatgatgatttccaccaaccaac 28359172  T
Q  344 caatatgaaccaccatggacgatgcaattgggaactatcaatgtgaaacc-tctcaaatgcaaacaccaaagcatataagtttttcttatttatttttcc 442  Q
     ||||||||||| |||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28359171 -aatatgaaccatcatggaggatgcaattgggaactatcagtgtgaaaccctctcaaatgcaaacaccaaagcatataagtttttcttatttatttttcc 28359073  T
Q  443 cattgttgattttgttgtgctttaaaatcgatcaaatcaagcaccaaagcaaatgcttcgtctaattaaatatctcttagttatttgcaattgaaaagca 542  Q
    |||||||||||||||| | |||||||||| |||||| |||||||||||||  ||||||||||||||||||| ||||    ||||||||||||||||| ||    
T  28359072 cattgttgattttgtttttctttaaaatcaatcaaagcaagcaccaaagc--atgcttcgtctaattaaatctctc----ttatttgcaattgaaaaaca 28358979  T
Q  543 ctattccc 550  Q
    ||||||||    
T  28358978 ctattccc 28358971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 42718504 - 42718294
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||     
T  42718504 aaccaccatgaatggtaggagaaaacaaaattaggtcggttcgctttcagccaccagtatgattggagcttaactttatctaacaattgattaaaataag 42718405  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42718404 cttctttttggtgaaatatgcgagcatttctttcaagccagatcacccacacacaagatagccaaataagattaagagttgagcgtttgttgttagaaaa 42718305  T
Q  214 gccgctaaagg 224  Q
    |||||||||||    
T  42718304 gccgctaaagg 42718294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 36651907 - 36652117
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||     
T  36651907 aaccaccatgaatggtaggagaaaacaaaactaagtcggttcgctttcagccaccaatatgattggagcttaactttatctaacaattgattaaaagaag 36652006  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  36652007 cttctttttggtgaaatatgcgagcatttctttcaagccagatcacccacacacaagatagccaaataagattaagagttgagtgtttgctgttagagaa 36652106  T
Q  214 gccgctaaagg 224  Q
    |||||||||||    
T  36652107 gccgctaaagg 36652117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 43499231 - 43499021
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  43499231 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccaccagtatgattggagcttaactttatctaacaattgattaaaagaag 43499132  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    ||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||    
T  43499131 cttctttttggtgaaatatgcgagcatttctttcacgccagatcacccacacacaagatagccaaataagattaagtgttgagcgtttgctattagagaa 43499032  T
Q  214 gccgctaaagg 224  Q
    |||||||||||    
T  43499031 gccgctaaagg 43499021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 7743506 - 7743296
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||| |||||||||||||||||||     
T  7743506 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcaaccaccagtatgattgaagcttaactttatttaacaattgattaaaagaag 7743407  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    ||||||||| ||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  7743406 cttctttttggtggaatatgcgagcatttctttcaagccagatcacccacacgcaagatagccaaataagattaagagttgagcgtttgctgttagagaa 7743307  T
Q  214 gccgctaaagg 224  Q
    |||| ||||||    
T  7743306 gccgttaaagg 7743296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 39059887 - 39060097
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    |||||||||||||||||||||||||||||||| ||  ||||||||||||| || ||||||||||| ||||||| |||||||||||||||||||||||||     
T  39059887 aaccaccatgaatggtaggagaaaacaaaacttgggtggttcgctttcagtcaccagtatgattgaagcttaattttatctaacaattgattaaaagaag 39059986  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    ||||||||| ||| ||||| |||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  39059987 cttctttttggtggaatattcgagcattcctttcaagtcagatcacccacacacaagatagtcaaataagattaagagctgagcgtttgctgttagaaaa 39060086  T
Q  214 gccgctaaagg 224  Q
    |||||||||||    
T  39060087 gccgctaaagg 39060097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 9896672 - 9896882
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||| ||     
T  9896672 aaccaccatgaatggtaggagaaaacaaaacttgggcggttcgctttcagccaccagtatgattgaagtttaactttatctaacaattgattaaaataag 9896771  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    ||||||||| ||| ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||| ||    
T  9896772 cttctttttggtggaatattcgagcattcctttcaagccagatcacccacacacaagatagccaaataagattaagagattagcgtttgccgttagagaa 9896871  T
Q  214 gccgctaaagg 224  Q
    ||| |||||||    
T  9896872 gccactaaagg 9896882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 37870824 - 37871034
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    ||||||||||||||||||||||||||||||| ||| || || || ||||||||  |||| ||||| | ||| |||||||||| ||||||||||||||||     
T  37870824 aaccaccatgaatggtaggagaaaacaaaaccaggacgatttgccttcagccactagtaagattgaaacttgactttatctagcaattgattaaaagaag 37870923  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    ||||||||| |||||| || ||| |||| |||||||| || ||||| |||||||| |||||||||||||| ||||||| |||| ||||| |||| |||||    
T  37870924 cttctttttggtgaaagatccgatcattcctttcaagccaaatcactcacacacatgatagccaaataaggttaagagctgagtgtttgttgtttgaaaa 37871023  T
Q  214 gccgctaaagg 224  Q
     ||| ||||||    
T  37871024 accgataaagg 37871034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 40850739 - 40850567
Alignment:
Q  13 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 112  Q
    ||||||||| ||||||||||| |||||||||||||| || || ||||||||||| ||||| ||||| |||||||||||||||| |||||||||||  |||    
T  40850739 taaccaccaagaatggtaggaaaaaacaaaactaggacgattagctttcagccaccagtaagattgaagcttaactttatctagcaattgattaatcgaa 40850640  T
Q  113 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 185  Q
     ||||| ||| |||||| || ||||||||  ||||||| || ||||||||||||||||||| ||| |||||||    
T  40850639 gcttctgtttggtgaaaaatccgagcattcatttcaagccaaatcacccacacacaagataaccatataagat 40850567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 13 - 173
Target Start/End: Original strand, 47590630 - 47590790
Alignment:
Q  13 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 112  Q
    ||||||||| |||||||||||||||||||||||||| || || ||||||||||| || || ||||| |||||||||||||||| |||||||||||  |||    
T  47590630 taaccaccaagaatggtaggagaaaacaaaactaggacgatttgctttcagccaccaataagattgaagcttaactttatctagcaattgattaatcgaa 47590729  T
Q  113 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagata 173  Q
    |||||| ||| |||||| |  |||||||| |||||||| || |||||||||||||||||||    
T  47590730 acttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagata 47590790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 56024960 - 56024798
Alignment:
Q  23 gaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaacttcttttt 122  Q
    |||||||||||||||||||||||||| || || ||||||||||| ||||| ||||| |||||||||||||||| |||||||||||  ||| ||||| |||    
T  56024960 gaatggtaggagaaaacaaaactaggacgatttgctttcagccaccagtaagattgaagcttaactttatctagcaattgattaatcgaagcttctgttt 56024861  T
Q  123 agtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 185  Q
     |||||| |  |||||||| |||||||| || |||| |||||||||||||| ||| |||||||    
T  56024860 ggtgaaaaacccgagcattcctttcaagccaaatcaaccacacacaagataaccatataagat 56024798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 48640659 - 48640488
Alignment:
Q  13 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 112  Q
    ||||||||| |||||||||||||||||||||||| | || || ||||||||||| ||||| ||||| || ||||||||||||| || ||||||||  |||    
T  48640659 taaccaccaagaatggtaggagaaaacaaaactatgacgatttgctttcagccaccagtaagattgaagattaactttatctagcagttgattaatcgaa 48640560  T
Q  113 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 184  Q
     ||||| ||| |||||| |  ||||||||  ||||||| || ||||||||||||||||||| ||| ||||||    
T  48640559 gcttctgtttggtgaaaaacccgagcattcatttcaagccaaatcacccacacacaagataaccatataaga 48640488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 80 - 165
Target Start/End: Original strand, 23106853 - 23106938
Alignment:
Q  80 agcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacac 165  Q
    ||||||| |||||||| |||||||||||||||| ||||||||| |||||| || |||||||| |||||||| || |||||||||||    
T  23106853 agcttaattttatctagcaattgattaaaagaagcttctttttggtgaaagatccgagcattcctttcaagccaaatcacccacac 23106938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 50 - 204
Target Start/End: Complemental strand, 50771697 - 50771543
Alignment:
Q  50 cggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaa 149  Q
    ||||||||||||||||| ||||||||||| ||  ||| ||||||||  |||||||| || || || |||||||  ||||| |  ||||  |||||||| |    
T  50771697 cggttcgctttcagccaccagtatgattgaagtataattttatctagtaattgattgaacgagacctctttttgatgaaagactcgagtgtttctttcta 50771598  T
Q  150 ggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgct 204  Q
    | || ||||||||||||||||| ||||| || ||||||| || |||||| |||||    
T  50771597 gccaaatcacccacacacaagaaagccatatgagattaaaagctgagcggttgct 50771543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 594 - 679
Target Start/End: Complemental strand, 28358926 - 28358841
Alignment:
Q  594 cttatgtccgaacaattgaaaagtcagaattgcaaccaaatccattaaatcaagnnnnnnnnntcttaaatttgaaaactagaatt 679  Q
    |||||||||||||||||||||||  ||||||||| |||||||||||||||||||         |||||| ||||||||||||||||    
T  28358926 cttatgtccgaacaattgaaaagctagaattgcacccaaatccattaaatcaagaaaaaacaatcttaagtttgaaaactagaatt 28358841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 40345959 - 40346163
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    ||||||||  |||||||||| ||| ||||  || | | ||||||||||||||| ||||||||||| || |||| ||||||||  |||||| | || ||      
T  40345959 aaccaccacaaatggtaggaaaaagcaaaggtatgacagttcgctttcagccaccagtatgattgaagtttaattttatctagtaattgaatgaacgagg 40346058  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    | |||||||  ||||| |  ||||  |||||||| |  || ||||||||||||||||| ||||| || ||||||| || |||||| ||||| || |||||    
T  40346059 cctctttttgatgaaagacccgagtgtttctttctatccaaatcacccacacacaagaaagccatatgagattaaaagctgagcggttgcttttggaaaa 40346158  T
Q  214 gccgc 218  Q
     ||||    
T  40346159 cccgc 40346163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 23108098 - 23108161
Alignment:
Q  161 cacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaagccgctaaagg 224  Q
    |||||||| |||||||||||||| ||||||| |||| |||||||||| ||||| ||||||||||    
T  23108098 cacacacatgatagccaaataaggttaagagctgagtgtttgctgtttgaaaaaccgctaaagg 23108161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 30598406 - 30598605
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    ||||||||  |||||||||| ||| ||||  ||||| |||||||||||||||| ||||||||||| || |||| |||||| |  |||||||| || || |    
T  30598406 aaccaccacaaatggtaggaaaaagcaaaggtaggttggttcgctttcagccaccagtatgattgaagtttaattttatccagtaattgattgaacgata 30598505  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    | |||||||  ||||| |   | |  |||||||| |  || ||||||||||||||||| || || || ||||||| || |||||| ||||| || |||||    
T  30598506 cctctttttgatgaaagacctgtgtgtttctttctatccaaatcacccacacacaagaaagtcatatgagattaaaagctgagcggttgcttttggaaaa 30598605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 603 - 643
Target Start/End: Complemental strand, 43457231 - 43457191
Alignment:
Q  603 gaacaattgaaaagtcagaattgcaaccaaatccattaaat 643  Q
    ||||||||||||||  |||||||||||||||||||||||||    
T  43457231 gaacaattgaaaagctagaattgcaaccaaatccattaaat 43457191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 19021324 - 19021114
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  19021324 aaccaccatgaatggcaggagaaaacaaaactaggtcggttcgctttcagccaccagtatgattggagcttaactttatctaacaattgattaaaagaag 19021225  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  19021224 cttctttttggtgaaatatgcgagcatttctttcaagccagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagagaa 19021125  T
Q  214 gccgctaaagg 224  Q
    |||||||||||    
T  19021124 gccgctaaagg 19021114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 22639493 - 22639283
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||     
T  22639493 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcactttcagccaccaatatgattggagcttaactttatctaacaattgattaaaagaag 22639394  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    ||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||    
T  22639393 cttctttttggtgaaatatgcgagcattcctttcaagccagatcacccacacacaagatagccaaataagattaagagaagagcgtttgctgttagagaa 22639294  T
Q  214 gccgctaaagg 224  Q
    |||||||||||    
T  22639293 gccgctaaagg 22639283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 26369110 - 26369295
Alignment:
Q  13 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 112  Q
    ||||||||| |||| ||||||||||||||||||||| || || ||||||||||| ||||| ||||| |||||||||||||||| |||||||||||  |||    
T  26369110 taaccaccaagaatagtaggagaaaacaaaactaggacgattagctttcagccaccagtaagattgaagcttaactttatctagcaattgattaatcgaa 26369209  T
Q  113 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcg 198  Q
     ||||| ||| |||||| |  |||||||| |||||||| || ||||||||||||||||||| ||| ||||||| || ||| |||||    
T  26369210 gcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaaagtggagcg 26369295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 22580567 - 22580759
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatca---gtatgattggagcttaactttatctaacaattgattaaaag 110  Q
    |||||||| ||||||||||| |||  ||||||||| |  |||||||||||||| ||   ||| ||||| ||||| |||||||||| |||||||||||| |    
T  22580567 aaccaccacgaatggtaggaaaaagtaaaactaggactattcgctttcagccagcaccagtaagattgaagcttcactttatctagcaattgattaaacg 22580666  T
Q  111 aaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgc 203  Q
    ||  || | |||  ||||| |  ||| |||| |||||||| || ||||||| ||||||||||||||| |||||||||| ||||||||| ||||    
T  22580667 aagtttatatttgttgaaagacccgaacattcctttcaagccaaatcacccgcacacaagatagccatataagattaaaagttgagcggttgc 22580759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 25982354 - 25982544
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    ||||||||  |||||||||| |||||||| || || ||||||||||||||||| ||||||||||| || |||| ||||||||  |||||||  || || |    
T  25982354 aaccaccacaaatggtaggaaaaaacaaagcttggacggttcgctttcagccaccagtatgattgaagtttaattttatctagtaattgatggaacgaga 25982453  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgct 204  Q
    | |||||||  ||||| |  || || |||||||| |  || |||||||||||| |||| ||||| || ||||||| ||||||||| |||||    
T  25982454 cctctttttgatgaaagacacgggcgtttctttctatccaaatcacccacacagaagaaagccatatgagattaaaagttgagcggttgct 25982544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 40973447 - 40973646
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    ||||||||  |||||||||| |||  ||||||||| ||||||||||||||||| ||||||||||| || |||| ||||||||  |||||||  || ||      
T  40973447 aaccaccacaaatggtaggaaaaagtaaaactaggacggttcgctttcagccaccagtatgattgaagtttaattttatctagtaattgatggaacgagg 40973546  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    | |||||||  ||||| |  ||||| |||||||| |  || || |||||||||||||| ||||| || ||||||| || |||||| ||||| || |||||    
T  40973547 cctctttttgatgaaagacccgagcgtttctttctatccaaataacccacacacaagaaagccatatgagattaaaagctgagcggttgcttttggaaaa 40973646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 6537011 - 6536979
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaacta 46  Q
    |||||||||||||||||||||||||||||||||    
T  6537011 aaccaccatgaatggtaggagaaaacaaaacta 6536979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 6764354 - 6764144
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||     
T  6764354 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccaccagtatgattgaagcttaactttatctaacaattgattaaaagaag 6764255  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6764254 cttctttttggtgaaatatgcgagcatttctttcaagccagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagagaa 6764155  T
Q  214 gccgctaaagg 224  Q
    |||||||||||    
T  6764154 gccgctaaagg 6764144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 12410721 - 12410512
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  12410721 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccaccagtatgattggagcttaactttatctaacaattgattaaaagaag 12410622  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    ||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  12410621 cttctttttggtgaaatatgcgagcatttctttcaagccatatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagagaa 12410522  T
Q  214 gccgctaaag 223  Q
    ||||||||||    
T  12410521 gccgctaaag 12410512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 37647899 - 37647689
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  37647899 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccaccagtatgattggagcttaactttatctaacaattgattaaaagaag 37647800  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    ||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  37647799 cttctttttggtgaaatatacgagcatttctttcaagccagatcacccacacacaggatagccaaataagattaagagttgagcgtttgctgttagagaa 37647700  T
Q  214 gccgctaaagg 224  Q
    |||||||||||    
T  37647699 gccgctaaagg 37647689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 12422781 - 12422574
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  12422781 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccaccagtatgattggagcttaactttatctaacaattgattaaaagaag 12422682  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    ||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  12422681 cttctttttggtgaaatatgcgagcatttctttcaagccatatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagagaa 12422582  T
Q  214 gccgctaa 221  Q
    || |||||    
T  12422581 gctgctaa 12422574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 27271573 - 27271372
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    |||||||||||| |||||||||||||||||||||| ||||||| ||||||||| |||||| ||||||||||         |||||||||||||||||||     
T  27271573 aaccaccatgaaaggtaggagaaaacaaaactaggacggttcgttttcagccaccagtataattggagctt---------taacaattgattaaaagaag 27271483  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    ||||||||| ||||||||| ||||||||||||| ||| || |||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||    
T  27271482 cttctttttggtgaaatattcgagcatttcttttaagccaaatcacccacacacaagttaggcaaataagattaagagctgagcgtttgctgttagaaaa 27271383  T
Q  214 gccgctaaagg 224  Q
    |||||||||||    
T  27271382 gccgctaaagg 27271372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 11031712 - 11031502
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    |||||||||||||||||||||||||||||| |||| || || || |||||||| ||||| ||||| ||||| |||||||||| ||||||||||||||||     
T  11031712 aaccaccatgaatggtaggagaaaacaaaattaggacgatttgccttcagccaccagtaagattgaagcttgactttatctagcaattgattaaaagaag 11031613  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    ||||||||| |||||| || |||||||| |||||||| || |||||||||||||| |||||||||||||| ||||||| |||| ||||| |||| |||||    
T  11031612 cttctttttggtgaaagatccgagcattcctttcaagtcaaatcacccacacacatgatagccaaataaggttaagagctgagtgtttgttgtttgaaaa 11031513  T
Q  214 gccgctaaagg 224  Q
     ||||||||||    
T  11031512 accgctaaagg 11031502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 2380800 - 2380965
Alignment:
Q  17 caccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaactt 116  Q
    ||||| ||||||||||||||||| |||||||| || || ||||||||||| |||||  |||| || ||||||||||||| |||||||||||  ||| |||    
T  2380800 caccaagaatggtaggagaaaacgaaactaggacgatttgctttcagccaccagtaaaattgaagtttaactttatctagcaattgattaattgaagctt 2380899  T
Q  117 ctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataa 182  Q
    || ||| ||||||  |  ||||||| |||||||| || ||||||||||||||||||| ||| ||||    
T  2380900 ctgtttggtgaaaagtctgagcattcctttcaagccaaatcacccacacacaagataaccatataa 2380965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 3044265 - 3044171
Alignment:
Q  13 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaa 107  Q
    ||||||||| |||||||||||||||||||||||||| || || ||||||||||| ||||| ||||| |||||||||||||||| |||||||||||    
T  3044265 taaccaccaagaatggtaggagaaaacaaaactaggacgattagctttcagccaccagtaagattgaagcttaactttatctagcaattgattaa 3044171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 7901139 - 7901278
Alignment:
Q  13 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattgga----gcttaactttatctaacaattgattaaa 108  Q
    |||||||||| |||| |||||||||||||||||||| || || ||||||||||| ||||| ||||| |    |||||||||||||||||||||||||||     
T  7901139 taaccaccataaatgataggagaaaacaaaactaggacgatttgctttcagccaccagtaagattgaagcttgcttaactttatctaacaattgattaat 7901238  T
Q  109 agaaacttctttttagtgaaatatgcgagcatttctttca 148  Q
     ||| ||||| ||| |||||| |  |||||||| ||||||    
T  7901239 tgaagcttctgtttggtgaaaaacccgagcattcctttca 7901278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 34394666 - 34394738
Alignment:
Q  23 gaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatcta 95  Q
    |||||||||||||||||||||||||| || || || |||| |||  |||| ||||| |||||| |||||||||    
T  34394666 gaatggtaggagaaaacaaaactaggacgatttgccttcaaccaatagtaagattgaagcttatctttatcta 34394738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 179; Significance: 4e-96; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 8444430 - 8444636
Alignment:
Q  18 accatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaacttc 117  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8444430 accatgaatggtaagagaaaacaaaactaggtcgattcgctttcagccaccagtatgattggagcttaactttatctaacaattgattaaaagaagcttc 8444529  T
Q  118 tttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaagccg 217  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8444530 tttttggtgaaatatgcgagcattcctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagagaagccg 8444629  T
Q  218 ctaaagg 224  Q
    |||||||    
T  8444630 ctaaagg 8444636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 24503986 - 24503779
Alignment:
Q  16 ccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaact 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  24503986 ccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcaaccaccagtatgattggagcttaactttatctaacaattgattaaaagaagct 24503887  T
Q  116 tctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaagc 215  Q
    ||||||| ||||||||||||| |||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24503886 tctttttggtgaaatatgcgaacattactttcaagacaaatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagagaagc 24503787  T
Q  216 cgctaaag 223  Q
     |||||||    
T  24503786 agctaaag 24503779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 45540249 - 45540046
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||     
T  45540249 aaccaccatgaatggtaggagaaaacaaaactaaggcggttcgctttcagccaccagtatgattgaagtttaactttatctaacaattgattaaaagaag 45540150  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    ||||||||| ||||||| | |||||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||| ||    
T  45540149 cttctttttggtgaaatgttcgagcattcctttcaagctagatcacccacacacaagatagacaaataagattaagagttgagagtttgttgttagagaa 45540050  T
Q  214 gccg 217  Q
    ||||    
T  45540049 gccg 45540046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 4034467 - 4034677
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    ||||||||||||||||||||||||||||||||||| || || ||||||||||| ||||| ||||| ||||| |||||||| | ||||||||||||||||     
T  4034467 aaccaccatgaatggtaggagaaaacaaaactaggacgatttgctttcagccaccagtaagattgaagcttgactttatccagcaattgattaaaagaag 4034566  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    ||||||||| |||||| ||  || |||| |||||||| || |||||||||||||| |||||||||||||| ||||||| |||| ||||| |||| |||||    
T  4034567 cttctttttggtgaaagatctgatcattcctttcaagccaaatcacccacacacatgatagccaaataaggttaagagctgagtgtttgttgtttgaaaa 4034666  T
Q  214 gccgctaaagg 224  Q
     ||| ||||||    
T  4034667 accgataaagg 4034677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 13089953 - 13090163
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    ||||||||| ||||||||||||||||||||||||| || || || |||||||| ||||| ||||| ||||| |||||||||| ||||||||||||||||     
T  13089953 aaccaccataaatggtaggagaaaacaaaactaggacgatttgccttcagccaccagtaagattgaagcttgactttatctagcaattgattaaaagaag 13090052  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    ||||||||| |||||| || ||| |||| |||||||| || |||||||||||||| |||||||||||||| ||||||| |||| ||||| |||| |||||    
T  13090053 cttctttttggtgaaagatccgatcattcctttcaagccaaatcacccacacacatgatagccaaataaggttaagagctgagtgtttgttgtttgaaaa 13090152  T
Q  214 gccgctaaagg 224  Q
     ||| ||||||    
T  13090153 accgataaagg 13090163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 9932271 - 9932443
Alignment:
Q  13 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 112  Q
    ||||||||| |||||||||||||||||||||||||| || || ||||||||||| ||||| ||||| |||||||||||||||| |||||||||||  |||    
T  9932271 taaccaccaagaatggtaggagaaaacaaaactaggacgattagctttcagccaccagtaagattgaagcttaactttatctagcaattgattaatcgaa 9932370  T
Q  113 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 185  Q
     ||||| ||| |||||| |  |||||||| |||||||| || ||||||||||||||||||| ||| |||||||    
T  9932371 gcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagataaccatataagat 9932443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 13 - 173
Target Start/End: Original strand, 25582756 - 25582916
Alignment:
Q  13 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 112  Q
    ||||||||| |||||||||||||||||||||||||| || || ||||||||||| ||||| ||||| |||||||||||||||| |||||||||||  |||    
T  25582756 taaccaccaagaatggtaggagaaaacaaaactaggacgattagctttcagccaccagtaagattgaagcttaactttatctagcaattgattaatcgaa 25582855  T
Q  113 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagata 173  Q
     ||||| ||| |||||| |  |||||||| |||||||| || |||||||||||||||||||    
T  25582856 gcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagata 25582916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 13781019 - 13781190
Alignment:
Q  13 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 112  Q
    ||||||||| ||||||||||||||||||||| |||| || || ||||||||||| ||||| ||||| ||||||||||||| |||||||| | |||  |||    
T  13781019 taaccaccaagaatggtaggagaaaacaaaattaggacgatttgctttcagcca-cagtaagattgaagcttaactttatttaacaattaagtaatcgaa 13781117  T
Q  113 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 185  Q
     ||||| ||| |||||| |  |||||||| |||||||| || |||| |||||||||||||| ||| |||||||    
T  13781118 gcttctatttggtgaaaaacccgagcattcctttcaagccaaatcatccacacacaagataaccatataagat 13781190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 44
Target Start/End: Original strand, 10230280 - 10230311
Alignment:
Q  13 taaccaccatgaatggtaggagaaaacaaaac 44  Q
    ||||||||||||||||||||||||||||||||    
T  10230280 taaccaccatgaatggtaggagaaaacaaaac 10230311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 175; Significance: 9e-94; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 175; E-Value: 9e-94
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 9511 - 9301
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||     
T  9511 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccaccagtatgattgaagcttaactttatctaacaattgattaaaataag 9412  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    ||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9411 cttctttttggtgaaatatgcgagcattcctttcaagccagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagagaa 9312  T
Q  214 gccgctaaagg 224  Q
    || ||||||||    
T  9311 gctgctaaagg 9301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 171; Significance: 2e-91; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 4532253 - 4532463
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||     
T  4532253 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccaccagtatgattggtgcttaactttatctaacaattgattaaaagaag 4532352  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
     |||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  4532353 tttctttttggtgaaatatgcgagcattcctttcaagtcagatcacccacacacaagatagtcaaataagattaagagttgagcgtttgctgttagagaa 4532452  T
Q  214 gccgctaaagg 224  Q
    ||||| |||||    
T  4532453 gccgccaaagg 4532463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 33936360 - 33936151
Alignment:
Q  15 accaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaac 114  Q
    ||||||| |||||||| ||||||||||||||| | || |||||||||||  ||||||| ||||| ||||||||||||| || |||||||||||| ||| |    
T  33936360 accaccacgaatggtaagagaaaacaaaactatgacgattcgctttcagttatcagtaagattgaagcttaactttatttagcaattgattaaacgaatc 33936261  T
Q  115 ttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaag 214  Q
    ||| |||| |||||| || |||||||| |||||||| || ||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||     
T  33936260 ttcattttggtgaaagatccgagcattcctttcaagccaaatcacccacacacaagatagctaaataagattaagagttgtgtgtttgctgttagaaaaa 33936161  T
Q  215 ccgctaaagg 224  Q
    ||||||||||    
T  33936160 ccgctaaagg 33936151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 31911724 - 31911928
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    |||||||| |||||||||||||||||||||||| | || ||| ||||||||||  |||| ||||| |||||||||||||||| |||||||||||| ||||    
T  31911724 aaccaccacgaatggtaggagaaaacaaaactatgacgattcactttcagccactagtaagattgaagcttaactttatctagcaattgattaaacgaaa 31911823  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    ||||||||| |||||| ||  ||||||| |||||||| || |||||||| ||||||||||||||||||||||||| || |||||| ||||| ||||| ||    
T  31911824 cttctttttggtgaaagatctgagcattcctttcaagtcaaatcacccatacacaagatagccaaataagattaaaagctgagcggttgctattagagaa 31911923  T
Q  214 gccgc 218  Q
    |||||    
T  31911924 gccgc 31911928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 34549285 - 34549075
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    ||||||||||||||||||||||||||||||||||| || || || |||||||| ||||| ||||| ||||| |||||||||| ||||||||||||||||     
T  34549285 aaccaccatgaatggtaggagaaaacaaaactaggacgatttgccttcagccaccagtaagattgaagcttgactttatctagcaattgattaaaagaag 34549186  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    ||||||||| || ||| || | | |||| |||||||| || |||||||||||||| |||||||||||||| ||||||| |||| ||||| |||| |||||    
T  34549185 cttctttttggttaaagatcctatcattcctttcaagccatatcacccacacacatgatagccaaataaggttaagagctgagtgtttgttgtttgaaaa 34549086  T
Q  214 gccgctaaagg 224  Q
     ||| ||||||    
T  34549085 accgataaagg 34549075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 19228065 - 19228274
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    ||||||||||||||||||||||||||||||||||| || ||  | |||||||| |  || ||||| ||||| |||||||||| ||||||||||||||||     
T  19228065 aaccaccatgaatggtaggagaaaacaaaactaggacgatttaccttcagccaccgataagattgaagcttgactttatctagcaattgattaaaagaag 19228164  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    ||||||||| |||||| || |||||||| |||||||| || |||||||||||||| ||||||||||| || ||||||| |||| ||||| |||| |||||    
T  19228165 cttctttttggtgaaagatccgagcattcctttcaagccaaatcacccacacacatgatagccaaat-aggttaagagctgagtgtttgttgtttgaaaa 19228263  T
Q  214 gccgctaaagg 224  Q
     ||||||||||    
T  19228264 accgctaaagg 19228274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 20505570 - 20505398
Alignment:
Q  13 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 112  Q
    ||||||||| |||||||||||||||||||||||||| || || ||||||||||| ||||| ||||| |||||||||||||||| |||||||||||  |||    
T  20505570 taaccaccaagaatggtaggagaaaacaaaactaggacgattagctttcagccaccagtaagattgaagcttaactttatctagcaattgattaatcgaa 20505471  T
Q  113 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 185  Q
     ||||| ||| |||||| |  |||||||| |||||||| || ||||||||||||||||||| ||| |||||||    
T  20505470 gcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagataaccatataagat 20505398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 51534647 - 51534753
Alignment:
Q  17 caccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaactt 116  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||  ||    
T  51534647 caccatgaatggtaggagaaaccaaaactaggtcggttcgctttcagccaccaatatgattggagcttaactttatctaacaattgattaaaagaagttt 51534746  T
Q  117 cttttta 123  Q
    |||||||    
T  51534747 cttttta 51534753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 13 - 173
Target Start/End: Complemental strand, 26676824 - 26676664
Alignment:
Q  13 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 112  Q
    ||||||||| |||||||||||||||||||||||||| || || ||||||||||| ||||| ||||| |||||||||||||||| |||||||||||  |||    
T  26676824 taaccaccaagaatggtaggagaaaacaaaactaggacgattagctttcagccaccagtaagattgaagcttaactttatctagcaattgattaatcgaa 26676725  T
Q  113 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagata 173  Q
     ||||| ||| |||||| |  |||||||| |||||||| || |||||||||||||||||||    
T  26676724 gcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagata 26676664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 33676671 - 33676843
Alignment:
Q  13 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 112  Q
    ||||||||| |||||||||||||||||||||||||| || || |||||||||||  |||| ||||| |||||||||||||||| |||||||||||  |||    
T  33676671 taaccaccaagaatggtaggagaaaacaaaactaggacgatttgctttcagccactagtaagattgaagcttaactttatctagcaattgattaatcgaa 33676770  T
Q  113 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 185  Q
    |||||| ||| |||||| |   ||||||| |||||||| || ||||| ||||||||||||| ||| |||||||    
T  33676771 acttctgtttggtgaaaaacctgagcattcctttcaagccaaatcactcacacacaagataaccatataagat 33676843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 28756653 - 28756803
Alignment:
Q  13 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 112  Q
    ||||||||| ||||||||||||||||||||||||||  | || ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||  |||    
T  28756653 taaccaccaagaatggtaggagaaaacaaaactaggatgatttgctttcagccaccagtaagattgaagcttaactttatctaacaattgattaatcgaa 28756752  T
Q  113 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccac 163  Q
     ||||| ||| |||||| |  |||||||| |||||||| || |||||||||    
T  28756753 gcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccac 28756803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 27007563 - 27007747
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    |||||||| |||||||||||||||||||||||||     |||||||||||| | || |||||||| |  |||||| |||||| |||||||||||| |||     
T  27007563 aaccaccacgaatggtaggagaaaacaaaactagaaaaattcgctttcagctaccaatatgattgaaatttaactctatctagcaattgattaaacgaag 27007662  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcg 198  Q
     |||||||| |||||| |  ||| ||||  ||||||| || |||||||||||||||||||| || ||||| |||| || ||||||    
T  27007663 attctttttggtgaaagacccgaacattcatttcaagccaaatcacccacacacaagatagtcatataagtttaaaagctgagcg 27007747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 46731994 - 46731822
Alignment:
Q  13 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 112  Q
    |||||||||  |||||||||||||||||||| |||| || || |||||||| || ||| | ||||| |||||||||||||||| |||||||||||  |||    
T  46731994 taaccaccaaaaatggtaggagaaaacaaaattaggacgatttgctttcagtcaccagcaagattgaagcttaactttatctagcaattgattaatcgaa 46731895  T
Q  113 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 185  Q
     ||| | ||| |||||| |  |||  ||| |||||||| || ||||||||||||||||||| ||| |||||||    
T  46731894 gcttttgtttggtgaaaaacccgattattcctttcaagccaaatcacccacacacaagataaccatataagat 46731822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 24 - 218
Target Start/End: Complemental strand, 15759875 - 15759681
Alignment:
Q  24 aatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaacttcttttta 123  Q
    |||||||||| ||| ||||  |||| ||||||||||||||||| ||||||||||| || |||| ||||||||  |||||||| || || || |||||||     
T  15759875 aatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccagtatgattgaagtttaattttatctagtaattgattgaacgagacctctttttg 15759776  T
Q  124 gtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaagccgc 218  Q
     ||||| |  ||||  |||||||| |  || |||||| |||||||||| ||||| || ||||||| ||||||||| ||||| || ||||| ||||    
T  15759775 atgaaagacccgagtgtttctttctatccaaatcacctacacacaagaaagccatatgagattaaaagttgagcggttgcttttggaaaacccgc 15759681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 52022693 - 52022615
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttat 92  Q
    |||||||||||||| |||||||||||||||||||| |  ||||||||| ||| |||||| ||||| |||||||||||||    
T  52022693 aaccaccatgaatgataggagaaaacaaaactaggacaattcgctttcggccgtcagtaagattgaagcttaactttat 52022615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 169; Significance: 3e-90; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 244 - 550
Target Start/End: Complemental strand, 3500710 - 3500408
Alignment:
Q  244 taaaacaaaaacctcaaaatccacc---tgatacataattcctttgctgtctgcatctacaccatcttcacacaaccatggatgatgatttccaccaacc 340  Q
    |||||||| ||||||||||||||||   |||||||| |||| |||| || ||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  3500710 taaaacaacaacctcaaaatccaccacctgatacatgattcatttgttgcctgcatctacactgtcttcacacaaccatggatgatgatttccaccaacc 3500611  T
Q  341 aaccaatatgaaccaccatggacgatgcaattgggaactatcaatgtgaaacc-tctcaaatgcaaacaccaaagcatataagtttttcttatttatttt 439  Q
    || |||||||||| | |||||| |||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3500610 aa-caatatgaactatcatggaggatgcaattgcgaactatcagtgtgaaaccttctcaaatgcaaacaccaaagcatataagtttttcttatttatttt 3500512  T
Q  440 tcccattgttgattttgttgtgctttaaaatcgatcaaatcaagcaccaaagcaaatgcttcgtctaattaaatatctcttagttatttgcaattgaaaa 539  Q
    | ||||||||||||||||| | |||||||||| |||||| |||||||||||  | ||||||||||||||||||| ||||    |||||||||||||||||    
T  3500511 t-ccattgttgattttgtttttctttaaaatcaatcaaagcaagcaccaaa--acatgcttcgtctaattaaatctctc----ttatttgcaattgaaaa 3500419  T
Q  540 gcactattccc 550  Q
     ||||||||||    
T  3500418 acactattccc 3500408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 18972786 - 18972993
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaa-caattgattaaaagaa 112  Q
    ||||||||||||||||||||||||||||||||||| || || |||||||||||  |||| ||||| |||||||||||||| || |||||||||||| |||    
T  18972786 aaccaccatgaatggtaggagaaaacaaaactaggacgatttgctttcagccacgagtaagattgaagcttaactttatcaaagcaattgattaaacgaa 18972885  T
Q  113 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaa 212  Q
     ||||||||| |||||| ||  ||||||| |||||||| || |||||||||||||||||||||||||||||||||||||  |||  |||| |||||||||    
T  18972886 gcttctttttggtgaaagattagagcattcctttcaagccaaatcacccacacacaagatagccaaataagattaagagcggagtttttgttgttagaaa 18972985  T
Q  213 agccgcta 220  Q
    | ||||||    
T  18972986 aaccgcta 18972993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 12912426 - 12912636
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    ||||||||||||||||||||||||||||||||||| || || || |||||||| ||||| ||||| ||||| |||||||||| ||||||||||||||||     
T  12912426 aaccaccatgaatggtaggagaaaacaaaactaggacgatttgccttcagccaccagtaagattgaagcttgactttatctagcaattgattaaaagaag 12912525  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    ||||||||| |||||| || | | |||| |||||||| || |||||||||||||| |||||||||||||| ||||||| |||| ||||| |||| |||||    
T  12912526 cttctttttggtgaaagatccaatcattcctttcaagccatatcacccacacacatgatagccaaataaggttaagagctgagtgtttgttgtttgaaaa 12912625  T
Q  214 gccgctaaagg 224  Q
     ||| ||||||    
T  12912626 accgataaagg 12912636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 24393838 - 24393632
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    |||||||| |||||||||||||||||||||||||| || ||  |||||||||| ||||| |||||  ||||||||||||| |||||||||||||| |||     
T  24393838 aaccaccacgaatggtaggagaaaacaaaactaggacgatttactttcagccaccagtaagattgaggcttaactttatcaaacaattgattaaacgaag 24393739  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    ||||||||| |||||| || | |||||| |||||| | || |||||||||||||||||||||||||||||||||||||  ||| ||||| ||||||||||    
T  24393738 cttctttttggtgaaagattccagcattcctttcatgccaaatcacccacacacaagatagccaaataagattaagagcggagtgtttgttgttagaaaa 24393639  T
Q  214 gccgcta 220  Q
     ||||||    
T  24393638 accgcta 24393632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 13 - 173
Target Start/End: Complemental strand, 6029255 - 6029095
Alignment:
Q  13 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 112  Q
    ||||||||||| |||||||||||||||||||||||| || ||||||||||||||  | || ||||| |||||||||||||||| |||||||||||  |||    
T  6029255 taaccaccatgtatggtaggagaaaacaaaactaggacgattcgctttcagccactaataagattgaagcttaactttatctagcaattgattaatcgaa 6029156  T
Q  113 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagata 173  Q
     ||||| ||| |||||| |  |||||||| |||||||| || |||||||| ||||||||||    
T  6029155 gcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccaaacacaagata 6029095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 7093850 - 7093646
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    ||||||||  |||||||||| ||| ||||  |||| ||||||||||||||||| ||||||||||| || |||| ||||||||  |||||| | || ||      
T  7093850 aaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccagtatgattgaagtttaattttatctagtaattgaatgaacgagg 7093751  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    | |||||||  ||||| |   |||  |||||||| |  || ||||||||||||||||| ||||| || ||||||| || |||||| ||||| || |||||    
T  7093750 cctctttttgatgaaagacctgagtgtttctttctatccaaatcacccacacacaagaaagccatatgagattaaaagctgagcggttgcttttggaaaa 7093651  T
Q  214 gccgc 218  Q
     ||||    
T  7093650 cccgc 7093646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 594 - 647
Target Start/End: Complemental strand, 3500364 - 3500311
Alignment:
Q  594 cttatgtccgaacaattgaaaagtcagaattgcaaccaaatccattaaatcaag 647  Q
    |||||||||||||||||||||||  ||||||||| |||||||||||||||||||    
T  3500364 cttatgtccgaacaattgaaaagctagaattgcacccaaatccattaaatcaag 3500311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 99; Significance: 2e-48; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 14 - 196
Target Start/End: Complemental strand, 94802 - 94620
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    ||||||||||||||||||||||||||||||||||| || || || |||||||| ||||| ||||| ||||| |||||||||| ||||||||||||||||     
T  94802 aaccaccatgaatggtaggagaaaacaaaactaggacgatttgccttcagccaccagtaagattgaagcttgactttatctagcaattgattaaaagaag 94703  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgag 196  Q
    ||||||||| |||||| || ||| |||| |||||||| || |||||||||||| | |||||||||||||| ||||||| ||||    
T  94702 cttctttttggtgaaagatccgatcattcctttcaagccaaatcacccacacaaatgatagccaaataaggttaagagctgag 94620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 96; Significance: 1e-46; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 23722 - 23515
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaa-caattgattaaaagaa 112  Q
    |||||||| |||||||||||||||||||||||| | || || |||||||||||  |||| || || |||||||||||||| || |||||||||||| |||    
T  23722 aaccaccacgaatggtaggagaaaacaaaactatgacgatttgctttcagccacgagtaagaatgaagcttaactttatcaaagcaattgattaaacgaa 23623  T
Q  113 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaa 212  Q
     ||||||||| |||||| ||  ||||||| |||||||| || |||||||||||||||||||||||||||||||||||||  |||  |||| |||||||||    
T  23622 gcttctttttggtgaaagatttgagcattcctttcaagccaaatcacccacacacaagatagccaaataagattaagagcggagtttttgttgttagaaa 23523  T
Q  213 agccgcta 220  Q
    | ||||||    
T  23522 aaccgcta 23515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 2e-42; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 10436606 - 10436778
Alignment:
Q  13 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 112  Q
    ||||||||| |||||||||||||||||||||||||| || || ||||||||||| ||||| ||||| |||||||||||||||| |||||||||||  |||    
T  10436606 taaccaccaagaatggtaggagaaaacaaaactaggacgattagctttcagccaccagtaagattgaagcttaactttatctagcaattgattaatcgaa 10436705  T
Q  113 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 185  Q
     ||||| ||| |||||| |  |||||||| |||||||| || ||||||||||||||||||| ||| |||||||    
T  10436706 gcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagataaccatataagat 10436778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 20406304 - 20406132
Alignment:
Q  13 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 112  Q
    ||||||||| |||||||||||||||||||||||||| || || |||||||||||  |||| ||||| |||||||||||||||| |||||| ||||  |||    
T  20406304 taaccaccaagaatggtaggagaaaacaaaactaggacgatttgctttcagccactagtaagattgaagcttaactttatctagcaattgcttaatcgaa 20406205  T
Q  113 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 185  Q
     ||||| ||| |||||| || |||||||| |||||||| || ||||||||||||||||||| ||| |||||||    
T  20406204 gcttctgtttggtgaaaaatccgagcattcctttcaagtcaaatcacccacacacaagataaccatataagat 20406132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 15030006 - 15029831
Alignment:
Q  13 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 112  Q
    ||||||||||| ||||||||||||| |||||||| |  | |||||||||| ||| || || ||||| |||||||||||||||| |||||||||||  |||    
T  15030006 taaccaccatgtatggtaggagaaaccaaaactatgatgattcgctttcaaccaccaataagattgaagcttaactttatctagcaattgattaatcgaa 15029907  T
Q  113 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaa 188  Q
     ||| | ||| |||||| |  | ||||||  ||||||| || ||||||||| || |||||| ||  ||||||||||    
T  15029906 gcttttgtttggtgaaaaacccaagcattcatttcaagccaaatcacccacgcataagataaccttataagattaa 15029831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 50 - 218
Target Start/End: Original strand, 53459119 - 53459287
Alignment:
Q  50 cggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaa 149  Q
    ||||||||||||||||| ||||||||||| || |||| ||||||||  |||||||| || ||  | |||||||  ||||| |  ||||  |||||||| |    
T  53459119 cggttcgctttcagccaccagtatgattgaagtttaattttatctagtaattgattgaacgaggcctctttttgatgaaagacccgagtgtttctttcta 53459218  T
Q  150 ggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaagccgc 218  Q
      || ||||||||||||||||| || || || ||||||| ||||||||| ||||| || ||||| ||||    
T  53459219 tccaaatcacccacacacaagaaagtcatatgagattaaaagttgagcggttgcttttggaaaacccgc 53459287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 56; Significance: 9e-23; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 9028 - 8829
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 113  Q
    ||||||||  |||||||||| ||| |||| ||||| ||||||||||||||||| ||||||||||| || |||| ||||||||  ||||||| ||| ||      
T  9028 aaccaccacaaatggtaggaaaaagcaaagctaggacggttcgctttcagccaccagtatgattgaagtttaattttatctagtaattgatgaaacgagg 8929  T
Q  114 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 213  Q
    | ||||||   ||||| |  ||||| |||||||| |  || ||||||||||||||||| ||||| || ||||||| || |||||| ||||| || |||||    
T  8928 cctcttttagatgaaagacccgagcgtttctttctatccaaatcacccacacacaagaaagccatatgagattaaaagctgagcggttgcttttggaaaa 8829  T

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Target: scaffold0037 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 899 - 865
Alignment:
Q  14 aaccaccatgaatggtaggagaaaacaaaactagg 48  Q
    |||||||||||||||||||||||||||||||||||    
T  899 aaccaccatgaatggtaggagaaaacaaaactagg 865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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