View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14220_low_1 (Length: 736)

Name: NF14220_low_1
Description: NF14220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14220_low_1
NF14220_low_1
[»] chr5 (21 HSPs)
chr5 (17-482)||(19714742-19715224)
chr5 (17-425)||(19716688-19717107)
chr5 (518-725)||(24695466-24695673)
chr5 (518-725)||(18569863-18570070)
chr5 (520-725)||(19714498-19714703)
chr5 (524-725)||(19707218-19707419)
chr5 (523-706)||(27347497-27347679)
chr5 (524-725)||(22547016-22547217)
chr5 (518-627)||(39537962-39538071)
chr5 (522-697)||(17285760-17285935)
chr5 (522-697)||(17298913-17299088)
chr5 (524-627)||(31886537-31886640)
chr5 (584-725)||(18807034-18807175)
chr5 (425-482)||(27347722-27347779)
chr5 (426-482)||(19707462-19707518)
chr5 (426-482)||(24695709-24695765)
chr5 (631-723)||(39538701-39538793)
chr5 (426-482)||(18570108-18570164)
chr5 (544-634)||(33477389-33477479)
chr5 (426-481)||(39537870-39537925)
chr5 (568-636)||(11479420-11479489)
[»] scaffold0234 (4 HSPs)
scaffold0234 (518-725)||(2321-2528)
scaffold0234 (518-725)||(11212-11419)
scaffold0234 (426-482)||(2564-2620)
scaffold0234 (426-482)||(11455-11511)
[»] chr4 (47 HSPs)
chr4 (518-725)||(19926760-19926967)
chr4 (518-725)||(26970463-26970670)
chr4 (518-725)||(55612683-55612890)
chr4 (518-725)||(5707320-5707527)
chr4 (518-725)||(26963640-26963847)
chr4 (518-725)||(5713948-5714155)
chr4 (518-725)||(10621333-10621540)
chr4 (518-725)||(868597-868804)
chr4 (518-725)||(10628412-10628619)
chr4 (520-725)||(18262214-18262419)
chr4 (520-725)||(28393134-28393339)
chr4 (520-725)||(4426604-4426808)
chr4 (520-725)||(18269070-18269280)
chr4 (530-725)||(8845215-8845410)
chr4 (530-725)||(8858179-8858374)
chr4 (518-633)||(12357136-12357251)
chr4 (526-725)||(20311299-20311499)
chr4 (524-725)||(10677555-10677753)
chr4 (524-725)||(10891195-10891393)
chr4 (524-725)||(5668125-5668327)
chr4 (520-724)||(5616215-5616421)
chr4 (524-725)||(35223576-35223767)
chr4 (426-482)||(5713856-5713912)
chr4 (426-482)||(19927003-19927059)
chr4 (426-482)||(26963548-26963604)
chr4 (426-482)||(26970371-26970427)
chr4 (424-480)||(28393380-28393436)
chr4 (425-482)||(5707227-5707284)
chr4 (426-482)||(4426847-4426903)
chr4 (426-482)||(10621576-10621632)
chr4 (426-482)||(12357044-12357100)
chr4 (423-482)||(55612591-55612650)
chr4 (428-482)||(868507-868561)
chr4 (426-482)||(10628655-10628711)
chr4 (426-482)||(17142372-17142428)
chr4 (544-725)||(21454137-21454319)
chr4 (426-482)||(18268976-18269032)
chr4 (567-634)||(39074278-39074346)
chr4 (426-482)||(5668371-5668427)
chr4 (434-482)||(55992681-55992729)
chr4 (428-482)||(20311207-20311261)
chr4 (433-482)||(8845117-8845166)
chr4 (433-482)||(8858081-8858130)
chr4 (442-482)||(18262136-18262176)
chr4 (568-627)||(11161913-11161972)
chr4 (432-482)||(24699956-24700006)
chr4 (556-717)||(56516094-56516255)
[»] chr1 (26 HSPs)
chr1 (518-725)||(18252030-18252237)
chr1 (518-725)||(18532514-18532721)
chr1 (518-725)||(27131409-27131616)
chr1 (520-725)||(21171233-21171438)
chr1 (520-725)||(27310577-27310782)
chr1 (520-725)||(16359035-16359240)
chr1 (524-725)||(36816633-36816834)
chr1 (518-725)||(3855919-3856126)
chr1 (518-725)||(22657221-22657429)
chr1 (524-725)||(27277557-27277756)
chr1 (552-725)||(12006539-12006712)
chr1 (552-725)||(12014284-12014457)
chr1 (425-482)||(27310821-27310878)
chr1 (530-725)||(9917918-9918106)
chr1 (426-482)||(18251936-18251992)
chr1 (426-482)||(18532757-18532813)
chr1 (425-482)||(16359280-16359337)
chr1 (426-482)||(21171479-21171535)
chr1 (426-482)||(3856164-3856220)
chr1 (426-478)||(22657469-22657521)
chr1 (524-593)||(30720625-30720694)
chr1 (434-479)||(36816881-36816926)
chr1 (426-482)||(27277800-27277856)
chr1 (423-482)||(27131652-27131707)
chr1 (548-625)||(3403248-3403325)
chr1 (548-625)||(3443494-3443571)
[»] chr7 (27 HSPs)
chr7 (518-725)||(29327784-29327991)
chr7 (518-725)||(11536062-11536269)
chr7 (518-725)||(11542980-11543187)
chr7 (520-725)||(15152445-15152650)
chr7 (520-725)||(15148144-15148349)
chr7 (520-725)||(18561009-18561214)
chr7 (520-725)||(12750828-12751033)
chr7 (524-721)||(12738542-12738739)
chr7 (520-725)||(18257842-18258047)
chr7 (524-706)||(13392157-13392338)
chr7 (540-725)||(2364917-2365101)
chr7 (426-482)||(12738443-12738499)
chr7 (426-482)||(12750733-12750789)
chr7 (426-482)||(15152350-15152406)
chr7 (426-481)||(29327690-29327745)
chr7 (524-611)||(39111819-39111905)
chr7 (426-482)||(2653275-2653331)
chr7 (551-710)||(7396221-7396381)
chr7 (426-482)||(11543223-11543279)
chr7 (426-482)||(15148049-15148105)
chr7 (426-482)||(11536305-11536361)
chr7 (426-481)||(13392030-13392085)
chr7 (425-482)||(18258087-18258144)
chr7 (592-635)||(3132748-3132791)
chr7 (568-633)||(10234179-10234244)
chr7 (426-482)||(18560913-18560969)
chr7 (518-550)||(2653207-2653239)
[»] chr3 (53 HSPs)
chr3 (518-725)||(6110064-6110271)
chr3 (518-725)||(10572592-10572799)
chr3 (520-725)||(16482483-16482688)
chr3 (524-725)||(17781118-17781319)
chr3 (518-725)||(15600884-15601091)
chr3 (518-725)||(15607429-15607636)
chr3 (520-725)||(18522665-18522870)
chr3 (521-725)||(13211305-13211509)
chr3 (518-725)||(13248607-13248814)
chr3 (518-725)||(15357586-15357793)
chr3 (524-725)||(10579355-10579556)
chr3 (520-725)||(18519980-18520182)
chr3 (524-725)||(19089745-19089946)
chr3 (518-725)||(8490488-8490702)
chr3 (520-725)||(17200184-17200389)
chr3 (537-725)||(15342219-15342407)
chr3 (520-725)||(13516813-13517018)
chr3 (518-679)||(18640792-18640953)
chr3 (524-725)||(32056900-32057101)
chr3 (524-725)||(1647521-1647726)
chr3 (520-706)||(16200128-16200313)
chr3 (518-710)||(29924971-29925163)
chr3 (518-710)||(29974124-29974316)
chr3 (520-696)||(16200434-16200609)
chr3 (525-725)||(24253388-24253589)
chr3 (624-725)||(17136465-17136566)
chr3 (520-582)||(18534758-18534820)
chr3 (423-482)||(8490393-8490452)
chr3 (426-482)||(6109972-6110028)
chr3 (426-482)||(13248515-13248571)
chr3 (426-482)||(17136137-17136193)
chr3 (425-482)||(18640989-18641046)
chr3 (426-482)||(13211211-13211267)
chr3 (426-482)||(17200427-17200483)
chr3 (426-482)||(18519885-18519941)
chr3 (423-476)||(10579603-10579656)
chr3 (520-565)||(18510924-18510969)
chr3 (426-482)||(1647768-1647824)
chr3 (426-482)||(13516719-13516775)
chr3 (426-482)||(17781358-17781414)
chr3 (426-482)||(19089985-19090041)
chr3 (426-482)||(32057144-32057200)
chr3 (423-482)||(16482727-16482785)
chr3 (420-482)||(18534657-18534719)
chr3 (426-482)||(15607672-15607729)
chr3 (426-482)||(15351237-15351293)
chr3 (426-482)||(15357829-15357885)
chr3 (426-482)||(18510829-18510885)
chr3 (426-482)||(18522570-18522626)
chr3 (426-476)||(10572840-10572890)
chr3 (426-482)||(15601127-15601184)
chr3 (426-482)||(29924879-29924935)
chr3 (426-482)||(29974032-29974088)
[»] scaffold0390 (4 HSPs)
scaffold0390 (518-725)||(6934-7141)
scaffold0390 (518-725)||(13950-14157)
scaffold0390 (424-482)||(14193-14251)
scaffold0390 (426-482)||(7177-7233)
[»] chr8 (17 HSPs)
chr8 (518-725)||(21940665-21940872)
chr8 (520-725)||(22171491-22171694)
chr8 (524-725)||(6094129-6094330)
chr8 (520-719)||(28554885-28555084)
chr8 (524-725)||(24642655-24642856)
chr8 (524-651)||(24636860-24636987)
chr8 (425-482)||(6094030-6094087)
chr8 (422-482)||(21940569-21940629)
chr8 (426-478)||(24642556-24642608)
chr8 (426-482)||(22070108-22070164)
chr8 (426-482)||(28554791-28554847)
chr8 (530-722)||(38232380-38232570)
chr8 (426-482)||(22171396-22171452)
chr8 (548-709)||(32872857-32873019)
chr8 (539-597)||(2375027-2375085)
chr8 (556-619)||(10920234-10920297)
chr8 (425-463)||(24636604-24636642)
[»] chr6 (30 HSPs)
chr6 (518-725)||(29308890-29309097)
chr6 (518-725)||(29315850-29316057)
chr6 (520-725)||(16566320-16566525)
chr6 (518-725)||(27381252-27381459)
chr6 (518-725)||(27471635-27471842)
chr6 (520-725)||(17684469-17684674)
chr6 (518-725)||(17691440-17691647)
chr6 (520-725)||(188977-189182)
chr6 (520-725)||(25537159-25537364)
chr6 (520-725)||(11651725-11651930)
chr6 (520-725)||(13359269-13359474)
chr6 (557-725)||(20553587-20553755)
chr6 (425-480)||(11651629-11651684)
chr6 (423-482)||(17691683-17691742)
chr6 (426-482)||(27381495-27381551)
chr6 (426-482)||(27471878-27471934)
chr6 (541-725)||(27925772-27925961)
chr6 (426-482)||(29308798-29308854)
chr6 (426-482)||(29315758-29315814)
chr6 (537-710)||(8509941-8510115)
chr6 (556-725)||(17850495-17850663)
chr6 (426-482)||(17684712-17684768)
chr6 (426-482)||(25537405-25537461)
chr6 (430-482)||(13359512-13359564)
chr6 (431-482)||(16566563-16566614)
chr6 (525-580)||(31258065-31258120)
chr6 (556-724)||(20736604-20736773)
chr6 (426-482)||(189221-189280)
chr6 (426-482)||(16394484-16394540)
chr6 (534-599)||(22259925-22259990)
[»] chr2 (10 HSPs)
chr2 (518-725)||(21330248-21330455)
chr2 (518-725)||(18796506-18796713)
chr2 (520-725)||(18619807-18620011)
chr2 (524-663)||(19692598-19692737)
chr2 (583-710)||(20977957-20978084)
chr2 (552-725)||(36270199-36270373)
chr2 (426-482)||(21330493-21330549)
chr2 (552-725)||(18822115-18822290)
chr2 (426-482)||(19692773-19692829)
chr2 (554-709)||(36802664-36802820)
[»] scaffold0220 (2 HSPs)
scaffold0220 (518-725)||(18288-18495)
scaffold0220 (425-482)||(18195-18252)
[»] scaffold0433 (2 HSPs)
scaffold0433 (518-725)||(7107-7314)
scaffold0433 (426-482)||(7015-7071)
[»] scaffold0657 (2 HSPs)
scaffold0657 (518-725)||(993-1200)
scaffold0657 (426-482)||(901-957)
[»] scaffold0186 (2 HSPs)
scaffold0186 (518-725)||(25990-26197)
scaffold0186 (426-481)||(26231-26286)
[»] scaffold0063 (2 HSPs)
scaffold0063 (520-725)||(5531-5736)
scaffold0063 (426-482)||(5436-5492)
[»] scaffold0008 (2 HSPs)
scaffold0008 (520-703)||(230363-230545)
scaffold0008 (425-482)||(230584-230641)
[»] scaffold0176 (2 HSPs)
scaffold0176 (518-582)||(8446-8510)
scaffold0176 (426-482)||(8546-8602)
[»] scaffold0203 (1 HSPs)
scaffold0203 (426-482)||(23769-23825)
[»] scaffold0326 (2 HSPs)
scaffold0326 (426-482)||(16523-16579)
scaffold0326 (518-551)||(16615-16648)
[»] scaffold0565 (2 HSPs)
scaffold0565 (428-482)||(10202-10256)
scaffold0565 (537-568)||(10127-10158)
[»] scaffold0637 (1 HSPs)
scaffold0637 (425-482)||(8943-9000)
[»] scaffold0705 (1 HSPs)
scaffold0705 (426-482)||(41-97)
[»] scaffold0170 (1 HSPs)
scaffold0170 (426-478)||(5878-5930)
[»] scaffold0767 (1 HSPs)
scaffold0767 (424-462)||(1-39)
[»] scaffold0032 (1 HSPs)
scaffold0032 (547-619)||(92194-92267)


Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 482
Target Start/End: Complemental strand, 19715224 - 19714742
Alignment:
Q  17 aatatatatttatttgtgtctgttccactcatttctctccaaagtaccaatatatatata------------------ctacaagagtactagtaattca 98  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||                  ||||||||||||||||||||||    
T  19715224 aatatatatttatttgtgtttgttccactcatttctctcaaaagtaccaatatatatatatatagacacacacacacactacaagagtactagtaattca 19715125  T
Q  99 tacgtgtggtgtggggtctcaacttaattttttctctcattcgtgtggatgtggaagagtgtgtactctaattcattcaaacatcataccattattgtat 198  Q
    || |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||    
T  19715124 tatgtgtggtgtgaggtctcaacttaattttttctctcattcatgtggatgtggaagagtgtgtactctaatttatttatacatcataccattattgtat 19715025  T
Q  199 attgatgggtatgttcaactgttgtatgtactttaaccactcaaaaatatgaaaaaaccaatttgatttcaatttgacttcatcctattaataacccatt 298  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||| | || ||||| ||||    
T  19715024 attgatgggtatgttcaactgttgtatgtgctttaaccactcaaaaatatgaaaaa-ccaatttgattttaatttgacttcatcttgttgataactcatt 19714926  T
Q  299 cattcattaattcattttgttttcaaatatcaaatacgtacatagctcattcccaccttctctctatcataccaaaacaacctccatcctatctgaaaga 398  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  19714925 cattcattaattcattttgttttcaattatcaaatacgtacatagctcattcgcaccttctctctatcagaccaaaacaacctccatcctatctgaaaga 19714826  T
Q  399 ttaagtgtgtaattcttcctcttctactgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19714825 ttatgtgtgtaattcttcctcttctactgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 19714742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 425
Target Start/End: Complemental strand, 19717107 - 19716688
Alignment:
Q  17 aatatatatttatttgtgtctgttccactcatttctctccaaagtacca------------atatatatatactacaagagtactagtaattcatacgtg 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||| ||||||||||||||||||||    
T  19717107 aatatatatttatttgtgtctgttccactcatttctctccaaagtaccagtatatatatatatatatatatactacaagggtactagtaattcatacgtg 19717008  T
Q  105 tggtgtggggtctcaacttaatttttt-ctctcattcgtgtggatgtggaagagtgtgtactctaattcattcaaacatcataccattattgtatattga 203  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19717007 tggtgtggggtctcaacttaatttttttctctcattcgtgtggatgtggaagagtgtgtactctaattcattcatacatcataccattattgtatattga 19716908  T
Q  204 tgggtatgttcaactgttgtatgtactttaaccactcaaaaatatgaaaaaaccaatttgatttcaatttgacttcatcctattaataacccattcattc 303  Q
    ||||||||||||||| |||||||| ||||||| | |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19716907 tgggtatgttcaactattgtatgtgctttaac-attcaaaaatgtgaaaaa-ccaatttgatttcaatttgacttcatcctattaataacccattcattc 19716810  T
Q  304 attaattcattttgttttcaaatatcaaatacgtacatagctcattcccaccttctctctatcataccaaaacaacctccatcctatctgaaagattaag 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  19716809 attaattcattttgttttcaaatatcaaatacgtacatagctcattcccaccttctctctatcagaccaaaacaacctccatcctatctgaaagattatg 19716710  T
Q  404 tgtgtaattcttcctcttctac 425  Q
    ||||||||||||||||||||||    
T  19716709 tgtgtaattcttcctcttctac 19716688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 518 - 725
Target Start/End: Complemental strand, 24695673 - 24695466
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24695673 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 24695574  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||    
T  24695573 accccattaaacataatgaaactattctaaaagtatccgtagtcaagctttattgagaagtgagatatcaataaagcatagagactattatgtaggtaga 24695474  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  24695473 ctgatgat 24695466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 518 - 725
Target Start/End: Complemental strand, 18570070 - 18569863
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18570070 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaattgaacattaagtataacttaattgtgag 18569971  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    ||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||| ||||||    
T  18569970 accccgttaaacataaggaaactactcttaaagtatccgtagtcaagctttattgagaagtggaatatcattaaagcataaagactattatgttggtaga 18569871  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  18569870 ctgatgat 18569863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 520 - 725
Target Start/End: Complemental strand, 19714703 - 19714498
Alignment:
Q  520 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 619  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19714703 aaggcatttctttattgattttgttttatttcaaagtaataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 19714604  T
Q  620 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagact 719  Q
    ||| |||||||||||||| ||||||| ||| |||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||    
T  19714603 cccgttaaacataaggaatctattcttaaaatatccgaagtcaagctttattgagaagtaggatatcattaaagcatagagactattatgtgggtagact 19714504  T
Q  720 gatgat 725  Q
    ||||||    
T  19714503 gatgat 19714498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 524 - 725
Target Start/End: Complemental strand, 19707419 - 19707218
Alignment:
Q  524 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 623  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  19707419 catttctttattgattttgttttatttcaaagtaataaagtccctagaatagttagtcagtttaatggaacattaagtataacttaattgtgagaccccg 19707320  T
Q  624 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactgatg 723  Q
    |||||||||||||| ||||||| ||| |||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||    
T  19707319 ttaaacataaggaatctattcttaaaatatccgaagtcaagctttattgagaagtaggatatcattaaagcatagagactattatgtgggtagactgatg 19707220  T
Q  724 at 725  Q
    ||    
T  19707219 at 19707218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 523 - 706
Target Start/End: Complemental strand, 27347679 - 27347497
Alignment:
Q  523 gcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccc 622  Q
    |||||||||| |||||||||||||| |||||||||||||||||| ||||||| ||| || |||||||||| |||||||| | ||||||| |||||| |||    
T  27347679 gcatttctttgttgattttgttttgattcaaaataataaagtccttagaataattaatctgtttaatggagcattaagtgtgacttaatcgtgaga-ccc 27347581  T
Q  623 attaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtatt 706  Q
    |||||||  ||||| | |||||| |||||||  ||||||||||||||||| |||  |||||| |||||||||||||||| ||||    
T  27347580 attaaacgaaaggacattattcttaaagtatatgtagtcaagctttattgtgaaaagggataacattaaagcatagagactatt 27347497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 524 - 725
Target Start/End: Complemental strand, 22547217 - 22547016
Alignment:
Q  524 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 623  Q
    ||||| |||||| |||||||||| ||| |||||||||||  | ||| ||||||||||| ||||||||||||||||||||||||||||| |||||| | ||    
T  22547217 catttatttattcattttgttttattttaaaataataaaaccgctataatagttagtcggtttaatggaacattaagtataacttaatcgtgagatctca 22547118  T
Q  624 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactgatg 723  Q
    ||||| ||| ||| | |||| | ||||||| || |||||| |||||||| |||||| |||| |||||||  ||||||| |||||||| | ||||| ||||    
T  22547117 ttaaatatatggacattatttttaaagtattcgcagtcaaactttattgtgaagtgagataacattaaaatatagagactattatgtggatagaccgatg 22547018  T
Q  724 at 725  Q
    ||    
T  22547017 at 22547016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 518 - 627
Target Start/End: Original strand, 39537962 - 39538071
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||| |||||||||| ||||||||||||||||||||||  | |||||| |||||||||| || ||||||||||||||||||||||||||||||||||||    
T  39537962 acaagccatttctttaatgattttgttttgtttcaaaatggttaagtccttagaatagttggttcgtttaatggaacattaagtataacttaattgtgag 39538061  T
Q  618 accccattaa 627  Q
    ||| ||||||    
T  39538062 acctcattaa 39538071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 522 - 697
Target Start/End: Complemental strand, 17285935 - 17285760
Alignment:
Q  522 ggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccc 621  Q
    ||||||| ||||||||||||||| ||||||||||||||||  |||  ||||||||||||| ||||||||||||||||||| | ||||||| |||| ||||    
T  17285935 ggcatttatttattgattttgttatgtttcaaaataataatctccagagaatagttagtctgtttaatggaacattaagtgtgacttaatcgtgaaaccc 17285836  T
Q  622 cattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcata 697  Q
     | |||||  || || | |||||| ||||||| | ||||| | |||||||| ||| |||||||  |||||||||||    
T  17285835 tagtaaactaaatgacattattcttaaagtattcatagtcgatctttattgtgaattgggatagtattaaagcata 17285760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 522 - 697
Target Start/End: Complemental strand, 17299088 - 17298913
Alignment:
Q  522 ggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccc 621  Q
    ||||||| ||||||||||||||| |||||  |||||||||  |||  ||||||||||||||| |||||||||||||||||   ||||||| |||| ||||    
T  17299088 ggcatttatttattgattttgttatgtttataaataataatatccagagaatagttagtccgattaatggaacattaagtgcgacttaatcgtgaaaccc 17298989  T
Q  622 cattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcata 697  Q
     | |||||  || || | |||||| ||||||| | ||||| | ||||||||  ||||||||||  |||||||||||    
T  17298988 tagtaaactaaatgacattattcttaaagtattcatagtcgatctttattgttaagtgggatagtattaaagcata 17298913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 524 - 627
Target Start/End: Original strand, 31886537 - 31886640
Alignment:
Q  524 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 623  Q
    |||||||||| |||||||||||||||||||| ||||||||||| ||||||| ||||| | |||||| |||||| |||||  ||||||| ||||||| |||    
T  31886537 catttctttagtgattttgttttgtttcaaattaataaagtccttagaataattagttcatttaattgaacatcaagtacgacttaatcgtgagactcca 31886636  T
Q  624 ttaa 627  Q
    ||||    
T  31886637 ttaa 31886640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 584 - 725
Target Start/End: Complemental strand, 18807175 - 18807034
Alignment:
Q  584 tttaatggaacattaagtataacttaattgtgagaccccattaaacataa-ggaaactattctcaaagtatccgtagtcaagctttattgagaagtggga 682  Q
    |||||||||||||||||| | ||||||| ||||||| |||||||| |||| ||| | |||||| ||||||||  ||||||||| |||||| |||||  ||    
T  18807175 tttaatggaacattaagtgtgacttaatcgtgagacaccattaaa-ataatggacattattcttaaagtatctatagtcaagcgttattgtgaagtaaga 18807077  T
Q  683 tatcattaaagcatagagagtattatgtaggtagactgatgat 725  Q
    || || ||||||||||||| |||||||  ||||||||||||||    
T  18807076 taacaataaagcatagagactattatgcgggtagactgatgat 18807034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 425 - 482
Target Start/End: Complemental strand, 27347779 - 27347722
Alignment:
Q  425 ctgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27347779 ctgttggagtaagccctaatagccaatctatattgattgcgtttggctttgtatcatg 27347722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 19707518 - 19707462
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19707518 tgttggagtaagccctaatagccaatctatattgattgagtttggctttgtatcatg 19707462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 24695765 - 24695709
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24695765 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 24695709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 631 - 723
Target Start/End: Original strand, 39538701 - 39538793
Alignment:
Q  631 taaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactgatg 723  Q
    |||||| |||||||| ||| ||||| |||| ||||||||||| |||||||||||||||||||||||  ||| |||||||| ||||||||||||    
T  39538701 taaggacactattcttaaaatatccatagttaagctttattgtgaagtgggatatcattaaagcatgaagactattatgtgggtagactgatg 39538793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 18570164 - 18570108
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    |||| |||||||| |||||||| |||||||||| |||||||||||||||||||||||    
T  18570164 tgttcgagtaagctctaatagctaatctatattaattgggtttggctttgtatcatg 18570108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 544 - 634
Target Start/End: Complemental strand, 33477479 - 33477389
Alignment:
Q  544 tttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacataag 634  Q
    ||||||||||||||||||||||| || ||||||||| | | |||||||| |||||||| | |  |||| |||||||| |||||| ||||||    
T  33477479 tttgtttcaaaataataaagtccttacaatagttaggctgattaatggatcattaagtgtgatctaatcgtgagacctcattaatcataag 33477389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 426 - 481
Target Start/End: Original strand, 39537870 - 39537925
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcat 481  Q
    ||||||| |||||||||||||||||||||| |||| || |||| ||||||||||||    
T  39537870 tgttggattaagccctaatagccaatctatgttgactgagtttagctttgtatcat 39537925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 636
Target Start/End: Original strand, 11479420 - 11479489
Alignment:
Q  568 tagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccc-cattaaacataagga 636  Q
    ||||||| |||||  |||||||| || ||||||| | |||| |||||||||||| |||||||||||||||    
T  11479420 tagaataattagtgtgtttaatgaaatattaagtgtgacttgattgtgagaccctcattaaacataagga 11479489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 518 - 725
Target Start/End: Complemental strand, 2528 - 2321
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2528 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 2429  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2428 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 2329  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  2328 ctgatgat 2321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 518 - 725
Target Start/End: Complemental strand, 11419 - 11212
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11419 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 11320  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11319 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 11220  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  11219 ctgatgat 11212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 2620 - 2564
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2620 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 2564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 11511 - 11455
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11511 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 11455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 47)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 518 - 725
Target Start/End: Complemental strand, 19926967 - 19926760
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19926967 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 19926868  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19926867 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 19926768  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  19926767 ctgatgat 19926760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 518 - 725
Target Start/End: Original strand, 26970463 - 26970670
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26970463 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 26970562  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26970563 accccattaaacataaggaaactattctcaaagtatccgtagtcaagatttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 26970662  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  26970663 ctgatgat 26970670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 518 - 725
Target Start/End: Original strand, 55612683 - 55612890
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55612683 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 55612782  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  55612783 accccattaaacataaggaaactactctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 55612882  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  55612883 ctgatgat 55612890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 518 - 725
Target Start/End: Original strand, 5707320 - 5707527
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5707320 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 5707419  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  5707420 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 5707519  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  5707520 ctgatgat 5707527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 518 - 725
Target Start/End: Original strand, 26963640 - 26963847
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26963640 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaaatataacttaattgtgag 26963739  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26963740 accccattaaacataaggaaactattctcaaagtatccgtagtcaagatttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 26963839  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  26963840 ctgatgat 26963847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 518 - 725
Target Start/End: Original strand, 5713948 - 5714155
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  5713948 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagcccatttaatggaacattaagtataacttaattgtgag 5714047  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  5714048 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 5714147  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  5714148 ctgatgat 5714155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 518 - 725
Target Start/End: Complemental strand, 10621540 - 10621333
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10621540 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctggaatagttagtccgtttaatggaacattaagtataacttaattgtgag 10621441  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10621440 agcccattaaacataaggaaactattctcaaagtatctgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 10621341  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  10621340 ctgatgat 10621333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 518 - 725
Target Start/End: Original strand, 868597 - 868804
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  868597 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 868696  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  868697 accccgttaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtaga 868796  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  868797 ctgatgat 868804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 518 - 725
Target Start/End: Complemental strand, 10628619 - 10628412
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10628619 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctggaatagttagtccgtttaatggaacattaagtataacttaattgtgag 10628520  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  10628519 agcccattaaacataaggaaactattctcaaagtatctgtagtcaagctttattgagaagtgggatattattaaagcatagagactattatgtaggtaga 10628420  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  10628419 ctgatgat 10628412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 520 - 725
Target Start/End: Original strand, 18262214 - 18262419
Alignment:
Q  520 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 619  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18262214 aaggcatttctttattgattttgtttcgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 18262313  T
Q  620 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagact 719  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18262314 cccgttaaacataaggaaactattctcaaagtatccgtagtcaagctttgatgagaagtgggatatcattaaagcatagagactattatgtaggtagact 18262413  T
Q  720 gatgat 725  Q
    ||||||    
T  18262414 gatgat 18262419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 520 - 725
Target Start/End: Complemental strand, 28393339 - 28393134
Alignment:
Q  520 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 619  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28393339 aaggcatttctttattgattttgatttgtttcaaaataataaagtccctaaaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 28393240  T
Q  620 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagact 719  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  28393239 cccattaaacataaggaaactattcttaaagtatctgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtgggtagact 28393140  T
Q  720 gatgat 725  Q
    ||||||    
T  28393139 gatgat 28393134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 520 - 725
Target Start/End: Complemental strand, 4426808 - 4426604
Alignment:
Q  520 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4426808 aaggcatttctttattgattttgttttgtttcaaaataataaagtccttagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 4426709  T
Q  620 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagact 719  Q
    ||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  4426708 cccgttaaacataagg-aactattcttaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtgggtagact 4426610  T
Q  720 gatgat 725  Q
    ||||||    
T  4426609 gatgat 4426604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 520 - 725
Target Start/End: Original strand, 18269070 - 18269280
Alignment:
Q  520 aaggcatttctttattgatttt-----gttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgt 614  Q
    ||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18269070 aaggcatttctttattgattttgttttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgt 18269169  T
Q  615 gagaccccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggt 714  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||    
T  18269170 gagaccccgttaaacataaggaaactattctcaaagtatccgtagtcaagctttgatgagaagtgggatatcattaaagcatagagactattatgtaggt 18269269  T
Q  715 agactgatgat 725  Q
    |||||||||||    
T  18269270 agactgatgat 18269280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 530 - 725
Target Start/End: Original strand, 8845215 - 8845410
Alignment:
Q  530 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaac 629  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  8845215 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagatcccgttaaac 8845314  T
Q  630 ataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactgatgat 725  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||| ||||||||    
T  8845315 ataaggaaactattcttaaagtatccgtagtcaagctttattgagaagtcggatatcattaaagcatagagactattatgtgggtaggctgatgat 8845410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 530 - 725
Target Start/End: Original strand, 8858179 - 8858374
Alignment:
Q  530 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaac 629  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  8858179 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagatcccgttaaac 8858278  T
Q  630 ataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactgatgat 725  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||| ||||||||    
T  8858279 ataaggaaactattcttaaagtatccgtagtcaagctttattgagaagtcggatatcattaaagcatagagactattatgtgggtaggctgatgat 8858374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 518 - 633
Target Start/End: Original strand, 12357136 - 12357251
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12357136 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 12357235  T
Q  618 accccattaaacataa 633  Q
    ||||||||||||||||    
T  12357236 accccattaaacataa 12357251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 526 - 725
Target Start/End: Original strand, 20311299 - 20311499
Alignment:
Q  526 tttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaag-tataacttaattgtgagaccccat 624  Q
    ||||||||||||||||||||||||| ||||||||||||| | || |||||||| |  ||| |||||| ||||||| ||||||||||||||||||||||||    
T  20311299 tttctttattgattttgttttgttttaaaataataaagtacttataatagttaatatgttcaatggagcattaaggtataacttaattgtgagaccccat 20311398  T
Q  625 taaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactgatga 724  Q
    |||||||||||| ||| || | |||||||  || |||||||||||||| |||||| ||||||||||||||||||||| |||| ||| |||||| ||||||    
T  20311399 taaacataaggacactgtttttaaagtatttgttgtcaagctttattgtgaagtgagatatcattaaagcatagagactattttgtgggtagattgatga 20311498  T
Q  725 t 725  Q
    |    
T  20311499 t 20311499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 524 - 725
Target Start/End: Complemental strand, 10677753 - 10677555
Alignment:
Q  524 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 623  Q
    ||||| |||||||||||| ||||||||||| | ||||||| ||||| |||| |||||| || ||||||| |||||||||| ||||||| | |||| ||||    
T  10677753 catttttttattgattttcttttgtttcaataaaataaagcccctaaaataattagtctgtataatggagcattaagtatgacttaatcgcgaga-ccca 10677655  T
Q  624 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactgatg 723  Q
    ||||||  || || | |||||| |||||||||||||||||||||||  | ||| || |||| |||||||| ||| ||| |||||||| ||||||||||||    
T  10677654 ttaaacgaaatgatattattcttaaagtatccgtagtcaagcttta--gtgaaatgagataacattaaagtatatagactattatgtgggtagactgatg 10677557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 524 - 725
Target Start/End: Complemental strand, 10891393 - 10891195
Alignment:
Q  524 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 623  Q
    ||||| |||||||||||| ||||||||||| | ||||||| ||||| |||| |||||| || ||||||| |||||||||| ||||||| | |||| ||||    
T  10891393 catttttttattgattttcttttgtttcaataaaataaagcccctaaaataattagtctgtataatggagcattaagtatgacttaatcgcgaga-ccca 10891295  T
Q  624 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactgatg 723  Q
    ||||||  || || | |||||| |||||||||||||||||||||||  | ||| || |||| |||||||| ||| ||| |||||||| ||||||||||||    
T  10891294 ttaaacgaaatgatattattcttaaagtatccgtagtcaagcttta--gtgaaatgagataacattaaagtatatagactattatgtgggtagactgatg 10891197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 524 - 725
Target Start/End: Complemental strand, 5668327 - 5668125
Alignment:
Q  524 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 623  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||  ||||||||| |||||||| | | ||||| |||||| ||||    
T  5668327 catttctttgttgattttgttttgtttcaaaataataaagtctctagaataattagtctatttaatggagcattaagtgtgatttaatcgtgaga-ccca 5668229  T
Q  624 ttaaacataaggaaactattctcaaag--tatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactga 721  Q
    |||||   ||||| | |||||| ||||  |||  ||||||||||||||||| |||  | |||| ||||||| |||||||| |||||||| | ||||| ||    
T  5668228 ttaaatgaaaggacattattcttaaagtatatttgtagtcaagctttattgtgaaaagagataacattaaatcatagagactattatgtggatagaccga 5668129  T
Q  722 tgat 725  Q
    ||||    
T  5668128 tgat 5668125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 520 - 724
Target Start/End: Original strand, 5616215 - 5616421
Alignment:
Q  520 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 619  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||| |||| ||||||  |||  ||||||||||||| | ||| |||  |||||     
T  5616215 aaggcatttctttattcattttgttttgtttcaaaataataaagttcctaaaataattagtctatttcttggaacattaagtctgactaaatcatgagat 5616314  T
Q  620 cccattaaacataaggaaactattctcaaagtatccgtagtcaa--gctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    ||| ||||||   |||| | |||||| ||||||||||| |||||  | ||||||  ||| |||||||| | |||||||| |||| ||||||||| |||||    
T  5616315 cccgttaaactagaggacattattcttaaagtatccgttgtcaaaggttttattatgaattgggatattaataaagcattgagactattatgtatgtaga 5616414  T
Q  718 ctgatga 724  Q
     ||||||    
T  5616415 ttgatga 5616421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 524 - 725
Target Start/End: Original strand, 35223576 - 35223767
Alignment:
Q  524 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 623  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||| |||||||| | |||||||          |     
T  35223576 catttctttgttgattttgttttgttttaaaataataaagtccctagaataattagtctgtttaatggagcattaagtgtgacttaat----------cg 35223665  T
Q  624 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactgatg 723  Q
    | ||||  ||||| | |||||| ||||||| ||||||||||||||||||  ||   ||||| |||||||||||| ||| |||||||| ||||||| ||||    
T  35223666 taaaacgaaaggacattattcttaaagtattcgtagtcaagctttattgtaaaaaaggataacattaaagcatatagactattatgtgggtagacggatg 35223765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 5713856 - 5713912
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5713856 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 5713912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 19927059 - 19927003
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19927059 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 19927003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 26963548 - 26963604
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26963548 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 26963604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 26970371 - 26970427
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26970371 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 26970427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 424 - 480
Target Start/End: Complemental strand, 28393436 - 28393380
Alignment:
Q  424 actgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatca 480  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28393436 actgttggagtaagccctaatagccaatctatattgattgggtttgactttgtatca 28393380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 425 - 482
Target Start/End: Original strand, 5707227 - 5707284
Alignment:
Q  425 ctgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5707227 ctgttggaataagccctaatagccaatctatattgattgtgtttggctttgtatcatg 5707284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 4426903 - 4426847
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  4426903 tgttggagtaagtcctaatagccaatctatattgattgggtttggctctgtatcatg 4426847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 10621632 - 10621576
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10621632 tgttggaataagccctaatagccaatctatattgattggttttggctttgtatcatg 10621576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 12357044 - 12357100
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12357044 tgttggaataagccctaatagccaatctatattgattggatttggctttgtatcatg 12357100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 423 - 482
Target Start/End: Original strand, 55612591 - 55612650
Alignment:
Q  423 tactgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  55612591 tactgttagaataagccctaataaccaatctatattgattgggtttggctttgtatcatg 55612650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 428 - 482
Target Start/End: Original strand, 868507 - 868561
Alignment:
Q  428 ttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  868507 ttggaataaaccctaatagccaatctatattgattgggtttggctttgtatcatg 868561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 10628711 - 10628655
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  10628711 tgttggaataagccctaatagccaatctatattgattggttttgactttgtatcatg 10628655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 17142428 - 17142372
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    |||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17142428 tgttggaaaaagccctaatagccaatctatattgattgggtttgactttgtatcatg 17142372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 544 - 725
Target Start/End: Complemental strand, 21454319 - 21454137
Alignment:
Q  544 tttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacatt-aagtataacttaattgtgagaccccattaaacataaggaaactat 642  Q
    ||||||||||| ||||||||| | |||||||||||||  | ||||||||||||| || | | |||||||  ||||||||||||||  |||| || | |||    
T  21454319 tttgtttcaaagtaataaagttcttagaatagttagtttgattaatggaacattaaaatgtgacttaatattgagaccccattaattataatgacattat 21454220  T
Q  643 tctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactgatgat 725  Q
    | | ||| ||||  ||||||| |||||||| ||| || |||| || ||| ||||| ||| ||||||||  ||||| |||||||    
T  21454219 ttttaaaatatctatagtcaaactttattgtgaaatgagataacaataatgcataaagattattatgtgagtagattgatgat 21454137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 18268976 - 18269032
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| ||||||| |||||||||||||| |||| |||||||||||||||||||||    
T  18268976 tgttggaataagcccaaatagccaatctatgttgaatgggtttggctttgtatcatg 18269032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 567 - 634
Target Start/End: Complemental strand, 39074346 - 39074278
Alignment:
Q  567 ctagaatagttagtccgtttaa-tggaacattaagtataacttaattgtgagaccccattaaacataag 634  Q
    |||||||| ||||||||||||| | ||||||||||||| |||||||  |||||||||||||||||||||    
T  39074346 ctagaataattagtccgtttaaattgaacattaagtatgacttaatcatgagaccccattaaacataag 39074278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 5668427 - 5668371
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||| |||||||  ||||||||||||||||||||||| |||||| |||||||||||    
T  5668427 tgttgaagtaagctttaatagccaatctatattgattgtgtttggttttgtatcatg 5668371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 434 - 482
Target Start/End: Original strand, 55992681 - 55992729
Alignment:
Q  434 taagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    |||||||||||||||||| | ||||||||||||||| ||||||||||||    
T  55992681 taagccctaatagccaatttgtattgattgggtttgactttgtatcatg 55992729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 428 - 482
Target Start/End: Original strand, 20311207 - 20311261
Alignment:
Q  428 ttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    |||||||||||  ||||||||||||| |||| ||||| |||||||||||||||||    
T  20311207 ttggagtaagctgtaatagccaatctgtattcattggatttggctttgtatcatg 20311261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 8845117 - 8845166
Alignment:
Q  433 gtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||| ||||||||||||||||| ||||||| ||||| ||||||||||||    
T  8845117 gtaagtcctaatagccaatctatgttgattgagtttgactttgtatcatg 8845166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 8858081 - 8858130
Alignment:
Q  433 gtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||| ||||||||||||||||| ||||||| ||||| ||||||||||||    
T  8858081 gtaagtcctaatagccaatctatgttgattgagtttgactttgtatcatg 8858130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 442 - 482
Target Start/End: Original strand, 18262136 - 18262176
Alignment:
Q  442 aatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    |||||||||||||| |||| |||||||||||||||||||||    
T  18262136 aatagccaatctatgttgaatgggtttggctttgtatcatg 18262176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 568 - 627
Target Start/End: Complemental strand, 11161972 - 11161913
Alignment:
Q  568 tagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaa 627  Q
    ||||||||||| || |||||||||||||  |||| | ||||||||||||||| |||||||    
T  11161972 tagaatagttaatcagtttaatggaacacaaagtgtgacttaattgtgagactccattaa 11161913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 432 - 482
Target Start/End: Original strand, 24699956 - 24700006
Alignment:
Q  432 agtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||||| |||| |||||||||||||||||  ||||| |||||||||||    
T  24699956 agtaagcccgaataaccaatctatattgattgaatttggttttgtatcatg 24700006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 556 - 717
Target Start/End: Original strand, 56516094 - 56516255
Alignment:
Q  556 taataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaa-actattctcaaagtatc 654  Q
    ||||||||||| |||||||| | ||  |  ||||| |||||||| | | |||||||||||||||  |||||| ||||  ||| | ||||||  |||||||    
T  56516094 taataaagtccttagaatagatggttagagtaatgaaacattaattgtgacttaattgtgagacttcattaa-catatagaacattattcttgaagtatc 56516192  T
Q  655 cgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
      |||||||||||||||| |||    ||||  |||||| |||||||| |||||||||||||||    
T  56516193 tatagtcaagctttattgtgaataacgatagtattaaaacatagagactattatgtaggtaga 56516255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 518 - 725
Target Start/End: Original strand, 18252030 - 18252237
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18252030 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 18252129  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18252130 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 18252229  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  18252230 ctgatgat 18252237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 518 - 725
Target Start/End: Complemental strand, 18532721 - 18532514
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18532721 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagttcgtttaatggaacattaagtataacttaattgtgag 18532622  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||    
T  18532621 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtagataga 18532522  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  18532521 ctgatgat 18532514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 518 - 725
Target Start/End: Complemental strand, 27131616 - 27131409
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27131616 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 27131517  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  27131516 accccattaaacataaggaaactattctcaaagtatttgtagtcaagctttattgagaagtgggatatcattaaagcataaagactattatgtaggtaga 27131417  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  27131416 ctgatgat 27131409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 520 - 725
Target Start/End: Complemental strand, 21171438 - 21171233
Alignment:
Q  520 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  21171438 aaggcatttctttattgattttgttttgtttcaaaataataaagtccttagaatagttagtccgtttcatggaacattaaatataacttaattgtgagac 21171339  T
Q  620 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagact 719  Q
    ||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||    
T  21171338 cccgttgaacataaggaaactattcttaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcataaagactattatgtgggtagact 21171239  T
Q  720 gatgat 725  Q
    ||||||    
T  21171238 gatgat 21171233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 520 - 725
Target Start/End: Complemental strand, 27310782 - 27310577
Alignment:
Q  520 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27310782 aaggcatttctttattgattttgttttgtttcaaaataataaagtccttagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 27310683  T
Q  620 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagact 719  Q
    | | || ||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||    
T  27310682 cacgttgaacataaggaaactattcttaaagtatcagtagtcaagctttattgagaagtggaatatcattaaagcatagagactattatgtgggtagact 27310583  T
Q  720 gatgat 725  Q
    ||||||    
T  27310582 gatgat 27310577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 520 - 725
Target Start/End: Complemental strand, 16359240 - 16359035
Alignment:
Q  520 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 619  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  16359240 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagaataacttaattgtgagac 16359141  T
Q  620 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagact 719  Q
    ||| |||||||||||||||||||||| |||||| || |||||||||||||||||||| ||| |||||||||||||||||||| |||||||| ||||||||    
T  16359140 cccgttaaacataaggaaactattcttaaagtaaccctagtcaagctttattgagaaatggaatatcattaaagcatagagactattatgtgggtagact 16359041  T
Q  720 gatgat 725  Q
    ||||||    
T  16359040 gatgat 16359035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 524 - 725
Target Start/End: Complemental strand, 36816834 - 36816633
Alignment:
Q  524 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 623  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||| ||     
T  36816834 catttctttattgattttgttttgtttcaaaataatgaagtccctagaatagttcgtctgtttaatggaacattaagtataaattaattgtgagactccg 36816735  T
Q  624 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactgatg 723  Q
    ||||||||||||| | |||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||| | ||||||||||    
T  36816734 ttaaacataaggacattattcttaaagtatccatagtcaagctttattgagaagtgggataccattaaagcatagagactattatgtggatagactgatg 36816635  T
Q  724 at 725  Q
    ||    
T  36816634 at 36816633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 518 - 725
Target Start/End: Complemental strand, 3856126 - 3855919
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3856126 acaaggcatttctttgtttattttgttttgtttcaaaataacaaagtccctagaatagttagcccgtttaatggaacattaagtataacttaattgtgag 3856027  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    ||||||||||||||||||| | |||||| ||| |||  |||||||| |||||||| |||||||||||| |||||||||| |||| ||||| || ||||||    
T  3856026 accccattaaacataaggacattattcttaaaatatttgtagtcaaactttattgtgaagtgggatattattaaagcatggagactattacgtgggtaga 3855927  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  3855926 ctgatgat 3855919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 518 - 725
Target Start/End: Complemental strand, 22657429 - 22657221
Alignment:
Q  518 acaaggcatttctttattgatttt-gttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtga 616  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  22657429 acaagacatttctttattgatttttgttttgtttcaaaataataaagttcctagaatagttagtctgtttaatggaacattaaatataacttaattgtga 22657330  T
Q  617 gaccccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtag 716  Q
    |||||| ||||||||||||| || ||||| ||||| ||  |||||||||||||||  ||| || ||||||||||||||||||||| ||| |||| | |||    
T  22657329 gacccctttaaacataaggacacaattcttaaagtgtctctagtcaagctttattctgaaatgagatatcattaaagcatagagactatcatgtggatag 22657230  T
Q  717 actgatgat 725  Q
    |||||||||    
T  22657229 actgatgat 22657221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 524 - 725
Target Start/End: Complemental strand, 27277756 - 27277557
Alignment:
Q  524 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 623  Q
    ||||||||| ||| |||||||||||||||||||||||| |||||||||||| ||||||| ||||| ||| ||||| || | ||||||| | ||||||       
T  27277756 catttctttgttgtttttgttttgtttcaaaataataacgtccctagaataattagtccatttaacggagcatta-gtgtgacttaatcgcgagacctt- 27277659  T
Q  624 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactgatg 723  Q
    |||| |  || || | |||||| |||||||||||||||| ||||||||| |||  |||||| |||||||||||||||| |||||||| ||||||| ||||    
T  27277658 ttaaccgaaatgacattattcttaaagtatccgtagtcaggctttattgtgaaaagggataacattaaagcatagagactattatgtgggtagaccgatg 27277559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 552 - 725
Target Start/End: Complemental strand, 12006712 - 12006539
Alignment:
Q  552 aaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaagt 651  Q
    ||||||||||||||||||||||||||||||  |||||||||| ||||||| |  |||||| |||||||||||| ||||||||||| | |||| | |||      
T  12006712 aaaataataaagtccctagaatagttagtctatttaatggaatattaagtgtgccttaatcgtgagaccccatgaaacataaggacattattattaaaac 12006613  T
Q  652 atccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactgatgat 725  Q
    || ||||||||||| ||| || |||| |||||| ||||||| | |||||| | ||||||   ||||||||||||    
T  12006612 attcgtagtcaagccttagtgtgaagagggataacattaaaacttagagattgttatgtgcatagactgatgat 12006539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 552 - 725
Target Start/End: Complemental strand, 12014457 - 12014284
Alignment:
Q  552 aaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaagt 651  Q
    |||||||||||||| ||||||||  ||||||||||||||||| ||||||| ||| ||||| || ||| |||||||||||||| ||   |||||| |||      
T  12014457 aaaataataaagtcactagaatacatagtccgtttaatggaatattaagtgtaaattaatcgttagatcccattaaacataatgatgttattcttaaaac 12014358  T
Q  652 atccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactgatgat 725  Q
    ||||||||| |||||||| || |||| ||||||  |||||||| || |||  ||||||| |||||| |||||||    
T  12014357 atccgtagttaagctttagtgtgaagagggatacgattaaagcgtaaagaccattatgtgggtagaatgatgat 12014284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 425 - 482
Target Start/End: Complemental strand, 27310878 - 27310821
Alignment:
Q  425 ctgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27310878 ctgttggagtaagccctaatagccaatctatattgattgagtttggctttgtatcatg 27310821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 530 - 725
Target Start/End: Complemental strand, 9918106 - 9917918
Alignment:
Q  530 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaac 629  Q
    |||||||||||||||||||| ||||||||||||||| ||       |||||  ||||||| |||||||||||||||||| ||   ||||  ||||||||     
T  9918106 tttattgattttgttttgttacaaaataataaagtcactt------ttagtttgtttaatcgaacattaagtataacttgatcacgaga-tccattaaat 9918014  T
Q  630 ataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactgatgat 725  Q
    ||||||| | |||||| ||| ||||  |||| |||||||||||  |||||||||| |||| ||||||||||| || ||||| |||||  |||||||    
T  9918013 ataaggacattattcttaaaatatctatagttaagctttattgttaagtgggatagcattgaagcatagagaatactatgtcggtaggttgatgat 9917918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 18251936 - 18251992
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18251936 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 18251992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 18532813 - 18532757
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18532813 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 18532757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 425 - 482
Target Start/End: Complemental strand, 16359337 - 16359280
Alignment:
Q  425 ctgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  16359337 ctgttggagtaagccctaatagccaatctatattgattgggttaggatttgtatcatg 16359280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 21171535 - 21171479
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||    
T  21171535 tgttggagtaagctctaatagccaatctatatggattgagtttggctttgtatcatg 21171479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 3856220 - 3856164
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    |||||||||| |||||||||||||||| || ||||||||||||| ||||||||||||    
T  3856220 tgttggagtaggccctaatagccaatccatcttgattgggtttgactttgtatcatg 3856164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 426 - 478
Target Start/End: Complemental strand, 22657521 - 22657469
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtat 478  Q
    |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  22657521 tgttggagtaagccttaatagccaatatatattgattgagtttggctttgtat 22657469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 524 - 593
Target Start/End: Complemental strand, 30720694 - 30720625
Alignment:
Q  524 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaa 593  Q
    ||||| ||||||| |||| |||||||| ||||||||||||| ||| ||||| ||||| ||||||||||||    
T  30720694 catttttttattggttttattttgttttaaaataataaagttcctggaataattagttcgtttaatggaa 30720625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 434 - 479
Target Start/End: Complemental strand, 36816926 - 36816881
Alignment:
Q  434 taagccctaatagccaatctatattgattgggtttggctttgtatc 479  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||    
T  36816926 taagccctaatattcaatctatattgattgggtttggctttgtatc 36816881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 27277856 - 27277800
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    |||||||||||||||||||||||||||||| || |||  ||||| ||||||||||||    
T  27277856 tgttggagtaagccctaatagccaatctatgttaattatgtttgactttgtatcatg 27277800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 423 - 482
Target Start/End: Complemental strand, 27131707 - 27131652
Alignment:
Q  423 tactgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    |||||||||| ||||||||||||||||||||||     ||||||||||||||||||||||    
T  27131707 tactgttggaataagccctaatagccaatctat----gttgggtttggctttgtatcatg 27131652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 625
Target Start/End: Original strand, 3403248 - 3403325
Alignment:
Q  548 tttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccatt 625  Q
    ||||||| ||||||||||  || ||||||||||| | ||||||||| ||||||| | |||||| ||||||||| ||||    
T  3403248 tttcaaagtaataaagtctataaaatagttagtctgattaatggaatattaagtgtgacttaaatgtgagaccacatt 3403325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 625
Target Start/End: Complemental strand, 3443571 - 3443494
Alignment:
Q  548 tttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccatt 625  Q
    ||||||| ||||||||||  || ||||||||||| | ||||||||| ||||||| | |||||| ||||||||| ||||    
T  3443571 tttcaaagtaataaagtctataaaatagttagtctgattaatggaatattaagtgtgacttaaatgtgagaccacatt 3443494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 518 - 725
Target Start/End: Original strand, 29327784 - 29327991
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29327784 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtcagtttaatggaacattaagtataacttaattgtgag 29327883  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29327884 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 29327983  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  29327984 ctgatgat 29327991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 518 - 725
Target Start/End: Complemental strand, 11536269 - 11536062
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11536269 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtacaacttaattgtgag 11536170  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11536169 accccattaaacataaggaacctattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 11536070  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  11536069 ctgatgat 11536062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 518 - 725
Target Start/End: Complemental strand, 11543187 - 11542980
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  11543187 acaatgcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtcag 11543088  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11543087 accccattaaacataaggaacctattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 11542988  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  11542987 ctgatgat 11542980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 520 - 725
Target Start/End: Original strand, 15152445 - 15152650
Alignment:
Q  520 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 619  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15152445 aaggcatttctttattgagtttgttttgtttcaaaataataaagttcctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 15152544  T
Q  620 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagact 719  Q
    ||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  15152545 cccgttaaacatacggaaactattcttaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 15152644  T
Q  720 gatgat 725  Q
    ||||||    
T  15152645 gatgat 15152650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 520 - 725
Target Start/End: Original strand, 15148144 - 15148349
Alignment:
Q  520 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 619  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  15148144 aaggcatttctttattgagtttgttttgtttcaaaataataaagttcctagaatagttagtccgtttgattgaacattaagtataacttaattgtgagac 15148243  T
Q  620 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagact 719  Q
    ||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  15148244 cccgttaaacataaggaaactattcttaaagtatctgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 15148343  T
Q  720 gatgat 725  Q
    ||||||    
T  15148344 gatgat 15148349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 520 - 725
Target Start/End: Original strand, 18561009 - 18561214
Alignment:
Q  520 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 619  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  18561009 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaactgtgagac 18561108  T
Q  620 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagact 719  Q
    ||| |||||||| ||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||    
T  18561109 cccgttaaacattaggaaactattcttaaagtatctgtagtcaagctttattgagaggtgggatatcattaaagcatagagactattatgtgggtagact 18561208  T
Q  720 gatgat 725  Q
    ||||||    
T  18561209 gatgat 18561214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 520 - 725
Target Start/End: Original strand, 12750828 - 12751033
Alignment:
Q  520 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 619  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12750828 aaggcatttctttattgattttgttttgtttcaaagtaataaagtccctagaatagttagtccgtttaatgaaacattaagtataacttaattgtgagac 12750927  T
Q  620 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagact 719  Q
    | | |||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| | ||||||    
T  12750928 ctcgttaaacataaagaaactattcttaaagtatccgtagtcaagctttattgagaagttggatatcattaaagcatagagactattatgtggatagact 12751027  T
Q  720 gatgat 725  Q
    ||||||    
T  12751028 gatgat 12751033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 524 - 721
Target Start/End: Original strand, 12738542 - 12738739
Alignment:
Q  524 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 623  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||| |||||||| ||||||||||||||||||||       
T  12738542 catttctttattgattttattttgtttcaaaataataaagtccctagaatagttagtttgtttaatgaaacattaattataacttaattgtgagaccttg 12738641  T
Q  624 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactga 721  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  12738642 ttaaacataaggaaactattcttaaagtatctgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtgggtagactga 12738739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 520 - 725
Target Start/End: Complemental strand, 18258047 - 18257842
Alignment:
Q  520 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||    
T  18258047 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaataattagtctgtttaatggaacattaagtatgacttaattgtgagac 18257948  T
Q  620 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagact 719  Q
    ||||||||||| ||||| | |||||| |||||||||||||||||| ||| |||  |||| ||||| || ||| ||||| ||| |||||||| | |||| |    
T  18257947 cccattaaacacaaggacattattcttaaagtatccgtagtcaagtttttttgttaagtaggataacaataatgcataaagactattatgtggatagatt 18257848  T
Q  720 gatgat 725  Q
    ||||||    
T  18257847 gatgat 18257842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 524 - 706
Target Start/End: Original strand, 13392157 - 13392338
Alignment:
Q  524 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 623  Q
    ||||||||| |||| |||||||||||||||||||||||||| ||||||| | |||||| | |||||||| |||||||| | ||||||| |||||| ||||    
T  13392157 catttctttgttgactttgttttgtttcaaaataataaagttcctagaacaattagtctgcttaatggagcattaagtgtgacttaatcgtgaga-ccca 13392255  T
Q  624 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtatt 706  Q
    |||||   ||||| | |||||| ||||||||  ||||||| |||||||| |||  |||||| ||||||| |||||||| ||||    
T  13392256 ttaaatgaaaggacattattcttaaagtatcaatagtcaaactttattgtgaaaagggataacattaaaacatagagactatt 13392338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 540 - 725
Target Start/End: Original strand, 2364917 - 2365101
Alignment:
Q  540 ttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaaac 639  Q
    ||||| |||||||||||||||||||| |||||||| ||||||  | |||||||||||||||| |  |||||| |||||| ||||||||||  || || |     
T  2364917 ttgttatgtttcaaaataataaagtctctagaataattagtctttctaatggaacattaagtgtggcttaatcgtgagaacccattaaactaaatgacat 2365016  T
Q  640 tattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactgatgat 725  Q
    |||||| ||| ||| ||||||||| | |||||| ||| || |||| ||||||| |||||||| ||| |||| ||| ||||||||||    
T  2365017 tattcttaaaatattcgtagtcaa-ccttattgtgaaatgagataacattaaaacatagagactatcatgtgggtcgactgatgat 2365101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 12738443 - 12738499
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12738443 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 12738499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 12750733 - 12750789
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12750733 tgttggagtaagccctaatagctaatctatattgattgggtttggctttgtatcatg 12750789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 15152350 - 15152406
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15152350 tgttggagtaagccctaatagccaatctatattgattgggtttggttttgtatcatg 15152406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 426 - 481
Target Start/End: Original strand, 29327690 - 29327745
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcat 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  29327690 tgttggagtaagccctaatagccaatctatattgattgggtttggttttgtatcat 29327745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 524 - 611
Target Start/End: Original strand, 39111819 - 39111905
Alignment:
Q  524 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaat 611  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||||||||  ||||||||||||| |||||||||||  |||||||    
T  39111819 catttctttattaattttgttttatttcaaaa-aataaagtccctagaatagcgagtccgtttaatgaaacattaagtacgacttaat 39111905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 2653331 - 2653275
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2653331 tgttggaataagccctaatagccaatctatattgattgggattggctttgtatcatg 2653275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 551 - 710
Target Start/End: Original strand, 7396221 - 7396381
Alignment:
Q  551 caaaataataaagtccctagaatagttagtccgtttaa-tggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaa 649  Q
    |||||||| || ||| |||||||||||||| | ||||| ||||||||||||||| |||||||  |||||||| |||||||||||| ||| |||||| |||    
T  7396221 caaaataaaaatgtcgctagaatagttagttcatttaaatggaacattaagtatgacttaatcttgagaccctattaaacataagaaaattattcttaaa 7396320  T
Q  650 gtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgt 710  Q
      ||  |||||||||| ||| || ||| |  |||   ||||||||||||||| ||||||||    
T  7396321 acatatgtagtcaagccttagtgtgaaatacgatgatattaaagcatagagactattatgt 7396381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 11543279 - 11543223
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11543279 tgttggaataagccctaatagccaatctatattgattggttttggctttgtatcatg 11543223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 15148049 - 15148105
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  15148049 tgttggagtaagccctaatagccaatctatattaattgggtttggttttgtatcatg 15148105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 11536361 - 11536305
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||    
T  11536361 tgttggaataagccctaatagccactctatattgattggttttggctttgtatcatg 11536305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 426 - 481
Target Start/End: Original strand, 13392030 - 13392085
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcat 481  Q
    |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||    
T  13392030 tgttggagtaagccctaatatccaatctatattgattgtgtttgactttgtatcat 13392085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 425 - 482
Target Start/End: Complemental strand, 18258144 - 18258087
Alignment:
Q  425 ctgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||||||||||||| |||||||||||| ||||||||| |||||| ||||||||||    
T  18258144 ctgttggagtaagccctgatagccaatctagattgattggttttggccttgtatcatg 18258087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 592 - 635
Target Start/End: Original strand, 3132748 - 3132791
Alignment:
Q  592 aacattaagtataacttaattgtgagaccccattaaacataagg 635  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  3132748 aacattaagtgtaacttaattgtgagaccccattaaacataagg 3132791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 568 - 633
Target Start/End: Original strand, 10234179 - 10234244
Alignment:
Q  568 tagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacataa 633  Q
    ||||||||||||||||||||||| | |||||| |||||||||||  |||||  |||||||||||||    
T  10234179 tagaatagttagtccgtttaatgaaccattaaatataacttaatcatgagattccattaaacataa 10234244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 18560913 - 18560969
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    |||||||||||||||| | || |||||||| ||||||||| ||||||||||||||||    
T  18560913 tgttggagtaagcccttaaaggcaatctatgttgattgggcttggctttgtatcatg 18560969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 518 - 550
Target Start/End: Complemental strand, 2653239 - 2653207
Alignment:
Q  518 acaaggcatttctttattgattttgttttgttt 550  Q
    |||||||||||||||||||||||||||||||||    
T  2653239 acaaggcatttctttattgattttgttttgttt 2653207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 53)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 518 - 725
Target Start/End: Original strand, 6110064 - 6110271
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6110064 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 6110163  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  6110164 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtaga 6110263  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  6110264 ctgatgat 6110271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 518 - 725
Target Start/End: Complemental strand, 10572799 - 10572592
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10572799 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 10572700  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  10572699 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtaga 10572600  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  10572599 ctgatgat 10572592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 520 - 725
Target Start/End: Complemental strand, 16482688 - 16482483
Alignment:
Q  520 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16482688 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 16482589  T
Q  620 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagact 719  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  16482588 cccattaaacataaggaaactactctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 16482489  T
Q  720 gatgat 725  Q
    ||||||    
T  16482488 gatgat 16482483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 524 - 725
Target Start/End: Complemental strand, 17781319 - 17781118
Alignment:
Q  524 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 623  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17781319 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 17781220  T
Q  624 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactgatg 723  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17781219 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatg 17781120  T
Q  724 at 725  Q
    ||    
T  17781119 at 17781118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 518 - 725
Target Start/End: Complemental strand, 15601091 - 15600884
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15601091 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 15600992  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  15600991 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtaga 15600892  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  15600891 ctgatgat 15600884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 518 - 725
Target Start/End: Complemental strand, 15607636 - 15607429
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15607636 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 15607537  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  15607536 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtaga 15607437  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  15607436 ctgatgat 15607429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 520 - 725
Target Start/End: Original strand, 18522665 - 18522870
Alignment:
Q  520 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18522665 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 18522764  T
Q  620 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagact 719  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  18522765 cccattaaacataaggaaactattcttaaagtatccgtagtcaagctttattgagaagtgggatatcatttaagcatagagactattatgtaggtagact 18522864  T
Q  720 gatgat 725  Q
    ||||||    
T  18522865 gatgat 18522870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 521 - 725
Target Start/End: Original strand, 13211305 - 13211509
Alignment:
Q  521 aggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacc 620  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13211305 aggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacc 13211404  T
Q  621 ccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactg 720  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  13211405 ccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgagatatcattaaagcatagagactattatgtaggtagactg 13211504  T
Q  721 atgat 725  Q
    |||||    
T  13211505 atgat 13211509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 518 - 725
Target Start/End: Original strand, 13248607 - 13248814
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13248607 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 13248706  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||    
T  13248707 accccattaaacataaggaaactattctcaaagtattcgtagtcaagctttgttgagaagtgggataacattaaagcatagagactattatgtaggtaga 13248806  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  13248807 ctgatgat 13248814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 518 - 725
Target Start/End: Complemental strand, 15357793 - 15357586
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15357793 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagattagttagtccgtttaatggaacattaagtataacttaattgtgag 15357694  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  15357693 accccattaaacataaggaacctattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaaacatagagactattatgtaggtaga 15357594  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  15357593 ctgatgat 15357586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 524 - 725
Target Start/End: Complemental strand, 10579556 - 10579355
Alignment:
Q  524 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 623  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10579556 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgttaaatggaacattaagtataacttaattgtgagacccca 10579457  T
Q  624 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactgatg 723  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  10579456 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgagatatcattaaagcatagagactattatgtaggtagactgatg 10579357  T
Q  724 at 725  Q
    ||    
T  10579356 at 10579355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 520 - 725
Target Start/End: Original strand, 18519980 - 18520182
Alignment:
Q  520 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18519980 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 18520079  T
Q  620 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagact 719  Q
    ||| |||||||||||||||||||||| ||   |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18520080 cccgttaaacataaggaaactattcttaa---atccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 18520176  T
Q  720 gatgat 725  Q
    ||||||    
T  18520177 gatgat 18520182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 524 - 725
Target Start/End: Complemental strand, 19089946 - 19089745
Alignment:
Q  524 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 623  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  19089946 catttctttattgattttgttttgtttcaaaataataaagtccctagattagttagtccgtttaatggaacattaagtataacttaattgtgagacccct 19089847  T
Q  624 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactgatg 723  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  19089846 ttaaacataatgaaactattcttaaagtatccgtagtcaagctttattgagaagtgggatatcattaaatcatagagactattatgtaggtagactgatg 19089747  T
Q  724 at 725  Q
    ||    
T  19089746 at 19089745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 518 - 725
Target Start/End: Original strand, 8490488 - 8490702
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8490488 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 8490587  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagt-------attatgt 710  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |       |||||||    
T  8490588 accccattaaacataaggaaactattctcaaagtatctgtagtcaagctttgttgagaagtgggatatcattaaagcatagagactacagacgattatgt 8490687  T
Q  711 aggtagactgatgat 725  Q
    |||||||||||||||    
T  8490688 aggtagactgatgat 8490702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 520 - 725
Target Start/End: Complemental strand, 17200389 - 17200184
Alignment:
Q  520 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  17200389 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgatac 17200290  T
Q  620 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagact 719  Q
    ||| |||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||| ||||||||||||||||||||| |||||||| ||||||||    
T  17200289 ccctttaaacataatgaaactattcttaaagtatccgtagttaagctttattgagatgtgtgatatcattaaagcatagagactattatgtgggtagact 17200190  T
Q  720 gatgat 725  Q
    ||||||    
T  17200189 gatgat 17200184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 537 - 725
Target Start/End: Complemental strand, 15342407 - 15342219
Alignment:
Q  537 attttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacataagga 636  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15342407 attttgttttgtttcaaaataataaagtccctagaatagtttgttcgtttaatggaacattaagtataacttaattgtgagaccccattaaacataagga 15342308  T
Q  637 aactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactgatgat 725  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  15342307 acctattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaaacatagagactattatgtaggtagactgatgat 15342219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 520 - 725
Target Start/End: Original strand, 13516813 - 13517018
Alignment:
Q  520 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 619  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  13516813 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttcatggaacattaagtataacttaattgtgagac 13516912  T
Q  620 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagact 719  Q
    ||| |||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| |||||||||||||||| ||||| |||||||| ||||||||    
T  13516913 cccgttaaacataaggaaacgattcttaaagtatctgtagtcaagctttattgagaagtaggatatcattaaagcacagagactattatgtgggtagact 13517012  T
Q  720 gatgat 725  Q
    ||||||    
T  13517013 gatgat 13517018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 518 - 679
Target Start/End: Complemental strand, 18640953 - 18640792
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18640953 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 18640854  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtg 679  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18640853 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtg 18640792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 524 - 725
Target Start/End: Complemental strand, 32057101 - 32056900
Alignment:
Q  524 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 623  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| |||||||     
T  32057101 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacatcaagtataactttattgtaagaccccg 32057002  T
Q  624 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactgatg 723  Q
    |||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||    
T  32057001 ttaaacataaagaaactattcttaaagtgtccgtagtcaaactttattgagaagtgggatatcattaaagcatagagactattatgtgggtagactaatg 32056902  T
Q  724 at 725  Q
    ||    
T  32056901 at 32056900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 524 - 725
Target Start/End: Complemental strand, 1647726 - 1647521
Alignment:
Q  524 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataa----cttaattgtgagac 619  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    ||||||||||||||    
T  1647726 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataattaacttaattgtgagac 1647627  T
Q  620 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagact 719  Q
    ||| |||||||||||||||||||| | |||||||||||| |||||||||||||||||  ||||||| ||||||||||||||| |||||||| | ||||||    
T  1647626 cccgttaaacataaggaaactatttttaaagtatccgtaatcaagctttattgagaaaagggatataattaaagcatagagactattatgtggatagact 1647527  T
Q  720 gatgat 725  Q
    ||||||    
T  1647526 gatgat 1647521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 520 - 706
Target Start/End: Original strand, 16200128 - 16200313
Alignment:
Q  520 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 619  Q
    ||||||||||||  ||| |||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  16200128 aaggcatttcttcgttg-ttttattttgtttcaaaataataaagtccttagaatagttagttcgtttaatggaacattatgtataacttaattgtgagac 16200226  T
Q  620 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtatt 706  Q
    ||||||||||||||||| | |||||| ||||||| |||||||||| ||||||| ||||||||||||||||||||||| |||| ||||    
T  16200227 cccattaaacataaggacattattcttaaagtattcgtagtcaagatttattgtgaagtgggatatcattaaagcatggagactatt 16200313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 518 - 710
Target Start/End: Original strand, 29924971 - 29925163
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||  ||||||||||| |||||||||||    
T  29924971 acaagacatttctttattgattttgttttgtttcaaaataataaagcccctaaaatagttagtccgtttaatggattattaagtataatttaattgtgag 29925070  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgt 710  Q
    ||||||||||| ||||||| | |||||| ||| |||  ||||||||||||||||| |||||| |||||||||||||||| |||  ||||||||    
T  29925071 accccattaaatataaggacattattcttaaaatatatgtagtcaagctttattgtgaagtgagatatcattaaagcatggaggctattatgt 29925163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 518 - 710
Target Start/End: Original strand, 29974124 - 29974316
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||  ||||||||||| |||||||||||    
T  29974124 acaagacatttctttattgattttgttttgtttcaaaataataaagcccctaaaatagttagtccgtttaatggattattaagtataatttaattgtgag 29974223  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgt 710  Q
    ||||||||||| ||||||| | |||||| ||| |||  ||||||||||||||||| |||||| |||||||||||||||| |||  ||||||||    
T  29974224 accccattaaatataaggacattattcttaaaatatatgtagtcaagctttattgtgaagtgagatatcattaaagcatggaggctattatgt 29974316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 520 - 696
Target Start/End: Original strand, 16200434 - 16200609
Alignment:
Q  520 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 619  Q
    ||||||||||||  ||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16200434 aaggcatttcttcgttg-ttttattttgtttcaaaataataaagtccttagaatagttagtccgtttaatggaacattatgtataacttaattgtgagac 16200532  T
Q  620 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcat 696  Q
     ||| |||||||||||| | |||||| ||||||| |||||||||| ||||||| |||||||||| ||||||||||||    
T  16200533 tccaataaacataaggacattattcttaaagtattcgtagtcaagatttattgtgaagtgggatgtcattaaagcat 16200609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 525 - 725
Target Start/End: Complemental strand, 24253589 - 24253388
Alignment:
Q  525 atttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgaga-cccca 623  Q
    ||||||||||||||||||||||  |||||||||||||||||| |||||||| | || ||||| |||||||||||||||| ||||||| |||||| |||||    
T  24253589 atttctttattgattttgttttacttcaaaataataaagtccttagaatagctcgttcgtttgatggaacattaagtatgacttaatcgtgagatcccca 24253490  T
Q  624 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactgatg 723  Q
    | ||||||||||| |||||||| |||||||  || |||||  |||||||  ||||| | || |||||||||||||||| |||||||| |||||||| |||    
T  24253489 tcaaacataaggacactattcttaaagtatatgtggtcaaaatttattgtaaagtgaggtaacattaaagcatagagactattatgtcggtagactaatg 24253390  T
Q  724 at 725  Q
    ||    
T  24253389 at 24253388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 624 - 725
Target Start/End: Original strand, 17136465 - 17136566
Alignment:
Q  624 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactgatg 723  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||    
T  17136465 ttaaacataaggaaactattcttaaagtatccgtagtcaagctttattgagaagtgggatatcattaaaacatagagactattatgtgggtagactgatg 17136564  T
Q  724 at 725  Q
    ||    
T  17136565 at 17136566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 520 - 582
Target Start/End: Original strand, 18534758 - 18534820
Alignment:
Q  520 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtcc 582  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18534758 aaggcatttctttattgattttgttttgtttcaaaataataaagtccatagaatagttagtcc 18534820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 423 - 482
Target Start/End: Original strand, 8490393 - 8490452
Alignment:
Q  423 tactgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8490393 tactgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 8490452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 6109972 - 6110028
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6109972 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 6110028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 13248515 - 13248571
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13248515 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 13248571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 17136137 - 17136193
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17136137 tgttggagtaagccctaatagccaatctatattgattgagtttggctttgtatcatg 17136193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 425 - 482
Target Start/End: Complemental strand, 18641046 - 18640989
Alignment:
Q  425 ctgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18641046 ctgttggaataagccctaatagccaatctatattgattgtgtttggctttgtatcatg 18640989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 13211211 - 13211267
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13211211 tgttggaataagccctaatagccaatctatattgattgggtttggttttgtatcatg 13211267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 17200483 - 17200427
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  17200483 tgttggagtaagccctaatagccaatctatgttgattgggtttggctttgtagcatg 17200427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 18519885 - 18519941
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  18519885 tgttggagtaagtcctaatagccaatctatattgattgggtttggttttgtatcatg 18519941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 423 - 476
Target Start/End: Complemental strand, 10579656 - 10579603
Alignment:
Q  423 tactgttggagtaagccctaatagccaatctatattgattgggtttggctttgt 476  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  10579656 tactgttggaataagccctaatagccaatctatattgattgggtttgactttgt 10579603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 520 - 565
Target Start/End: Original strand, 18510924 - 18510969
Alignment:
Q  520 aaggcatttctttattgattttgttttgtttcaaaataataaagtc 565  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  18510924 aaggcatttctttattgattttgttttgtttcaaaataataaagtc 18510969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 1647824 - 1647768
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  1647824 tgttggagtaagccctaatagctggtctatattgattgggtttggctttgtatcatg 1647768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 13516719 - 13516775
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||    
T  13516719 tgttggagtaagccctaatagccaatctatgttgattgagtttggctgtgtatcatg 13516775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 17781414 - 17781358
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||    
T  17781414 tgttggagtaagccctaatagccaatctatattgattgagtttggttttatatcatg 17781358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 19090041 - 19089985
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||    
T  19090041 tgttggagtaagccctaatagccaatctatattgattgagtttggttttatatcatg 19089985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 32057200 - 32057144
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||    
T  32057200 tgttggagtaagctctaatagccaatctatgttgattgggtttgactttgtatcatg 32057144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 423 - 482
Target Start/End: Complemental strand, 16482785 - 16482727
Alignment:
Q  423 tactgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16482785 tactgttagaataagccctaata-ccaatctatattgattgggtttggctttgtatcatg 16482727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 420 - 482
Target Start/End: Original strand, 18534657 - 18534719
Alignment:
Q  420 ttctactgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||| ||||| ||||||||||||||| |||||||||||||||| |||||| |||||||||||    
T  18534657 ttctattgttgtagtaagccctaatagtcaatctatattgattgagtttggttttgtatcatg 18534719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 15607729 - 15607672
Alignment:
Q  426 tgttggagtaagccctaatagccaatctata-ttgattgggtttggctttgtatcatg 482  Q
    ||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||    
T  15607729 tgttggaataagccctaatagccaatctatattttattgggtttggctttgtatcatg 15607672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 15351293 - 15351237
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| ||||||||||||||||||||||| ||||||  |||||||||||||||||    
T  15351293 tgttggaataagccctaatagccaatctataatgattgattttggctttgtatcatg 15351237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 15357885 - 15357829
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| ||||||||||||||||||||||| ||||||  |||||||||||||||||    
T  15357885 tgttggaataagccctaatagccaatctataatgattgattttggctttgtatcatg 15357829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 18510829 - 18510885
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    |||||||||||||||||||| ||||||||||||||||| |||||  |||||||||||    
T  18510829 tgttggagtaagccctaatatccaatctatattgattgagtttgattttgtatcatg 18510885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 18522570 - 18522626
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    |||||||||||||||||||| ||||||||||||||||| |||||  |||||||||||    
T  18522570 tgttggagtaagccctaatatccaatctatattgattgagtttgattttgtatcatg 18522626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 426 - 476
Target Start/End: Complemental strand, 10572890 - 10572840
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgt 476  Q
    ||||||| ||||||||||||||||| |||||||||||||||||| ||||||    
T  10572890 tgttggaataagccctaatagccaacctatattgattgggtttgactttgt 10572840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 15601184 - 15601127
Alignment:
Q  426 tgttggagtaagccctaatagccaatctata-ttgattgggtttggctttgtatcatg 482  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||| |||||||||||    
T  15601184 tgttggaataagccctaatagccaatctatattttattgggtttggatttgtatcatg 15601127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 29924879 - 29924935
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||||||||||||||||| | |||||||||||||| ||||| | ||||||||||    
T  29924879 tgttggagtaagccctaatagtcgatctatattgattgagtttgacattgtatcatg 29924935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 29974032 - 29974088
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||||||||||||||||| | |||||||||||||| ||||| | ||||||||||    
T  29974032 tgttggagtaagccctaatagtcgatctatattgattgagtttgacattgtatcatg 29974088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 518 - 725
Target Start/End: Complemental strand, 7141 - 6934
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7141 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaactgtgag 7042  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7041 accctattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 6942  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  6941 ctgatgat 6934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 518 - 725
Target Start/End: Complemental strand, 14157 - 13950
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  14157 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctacaatagttagtccgtttaatggaacattaagtataacttaactgtgag 14058  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  14057 accccattaaacataaggaaactattctcaaagtatctgtagtcaagctttattgagaagtgggatatcattaaagcataaagactattatgtaggtaga 13958  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  13957 ctgatgat 13950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 424 - 482
Target Start/End: Complemental strand, 14251 - 14193
Alignment:
Q  424 actgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||    
T  14251 actgttggaataagccctaatagccaatctatattgattgagtttggttttgtatcatg 14193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 7233 - 7177
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||    
T  7233 tgttggaataagccctaatagccaatctatattgattgagtttggttttgtatcatg 7177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 518 - 725
Target Start/End: Original strand, 21940665 - 21940872
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21940665 acaatgcatttctttattgattttgttttgtttcaaaataataaagttcctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 21940764  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21940765 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 21940864  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  21940865 ctgatgat 21940872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 520 - 725
Target Start/End: Original strand, 22171491 - 22171694
Alignment:
Q  520 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 619  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22171491 aaggcatttccttattgattttgttttatttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 22171590  T
Q  620 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagact 719  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  22171591 cccattaaacata--gaaactattctcaaagtatccgtagtcaagctttattgagaagtggaatatcattaaagcatagagactattatgtaggtagact 22171688  T
Q  720 gatgat 725  Q
    ||||||    
T  22171689 gatgat 22171694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 524 - 725
Target Start/End: Original strand, 6094129 - 6094330
Alignment:
Q  524 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 623  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  6094129 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccg 6094228  T
Q  624 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactgatg 723  Q
    |||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||| |||||    
T  6094229 ttaaacataaggaaactatttttaaagtatctgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatatgggtagagtgatg 6094328  T
Q  724 at 725  Q
    ||    
T  6094329 at 6094330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 520 - 719
Target Start/End: Original strand, 28554885 - 28555084
Alignment:
Q  520 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 619  Q
    |||||||||||||||||||||||||| |||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28554885 aaggcatttctttattgattttgtttagtttcaaaataataaaatacctaaaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 28554984  T
Q  620 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagact 719  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28554985 cccattaaacataatgaaactattctaaaagtatccgtagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtagact 28555084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 524 - 725
Target Start/End: Original strand, 24642655 - 24642856
Alignment:
Q  524 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 623  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  24642655 catttctttattgattttgttttgtttcaaaatcataaagtccctagaattgttagtccgtttaatggaacattaagtataacttaattgtgagaccccg 24642754  T
Q  624 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactgatg 723  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||| ||||||||||||    
T  24642755 ttaaacataaggaaactattcttaaagtattcgtagtcaagctttattgagaagtgagatatcattaaagtatagagactattatgtgggtagactgatg 24642854  T
Q  724 at 725  Q
    ||    
T  24642855 at 24642856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 524 - 651
Target Start/End: Original strand, 24636860 - 24636987
Alignment:
Q  524 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 623  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  24636860 catttctttcttgattttgttttgtttcaaaataataaagtccctagaatagttagtccttttaatggaacattaagtataacttaattgtgagaccccg 24636959  T
Q  624 ttaaacataaggaaactattctcaaagt 651  Q
    |||||||||||||||||||||| |||||    
T  24636960 ttaaacataaggaaactattcttaaagt 24636987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 425 - 482
Target Start/End: Original strand, 6094030 - 6094087
Alignment:
Q  425 ctgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6094030 ctgttggagtaagccctaatagccaatctatattgattgagtttggctttgtatcatg 6094087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 422 - 482
Target Start/End: Original strand, 21940569 - 21940629
Alignment:
Q  422 ctactgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21940569 ctactgttggaataagccctaatagccaatctatattgattggttttggctttgtatcatg 21940629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 426 - 478
Target Start/End: Original strand, 24642556 - 24642608
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtat 478  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24642556 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtat 24642608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 22070108 - 22070164
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22070108 tgttggaataagccctaatagccaatctatattgattgggtttggttttgtatcatg 22070164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 28554791 - 28554847
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  28554791 tgttggagtaagccctaatagccaatctttgttgattgggtttggctttgtatcatg 28554847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 530 - 722
Target Start/End: Complemental strand, 38232570 - 38232380
Alignment:
Q  530 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaac 629  Q
    ||||||||||||||||| ||||||||||||||| || ||||||||||||||| |||||||  |   ||| ||||||||||||  ||| || |||||||||    
T  38232570 tttattgattttgttttatttcaaaataataaa-tctctagaatagttagtctgtttaataaatttttaggtataacttaatcatgacactccattaaac 38232472  T
Q  630 ataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactgat 722  Q
     |||  | | |||||| |||||||  |||||||| ||||||||  ||||| ||||   |||||||||| | | |||| ||| |||||||||||    
T  38232471 gtaa-aatagtattcttaaagtatttgtagtcaaactttattgtaaagtgagatagtcttaaagcataaaaactattttgtgggtagactgat 38232380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 22171396 - 22171452
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||    
T  22171396 tgttggaataagccctaatagccaatctatattgattgggtttgattttgtatcatg 22171452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 548 - 709
Target Start/End: Complemental strand, 32873019 - 32872857
Alignment:
Q  548 tttcaaaataataaagtccctagaatagttagtccgttta-atggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctc 646  Q
    ||||||||||||||||||| || |||||||  ||| |||| || ||||||||||||| |||||||||||||| | |||| || | |  || | || | |     
T  32873019 tttcaaaataataaagtccttataatagttcatccatttatatagaacattaagtatgacttaattgtgagatctcattgaaaagagtgacaatactatt 32872920  T
Q  647 aaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatg 709  Q
    ||| |||  ||||| ||| ||||||| ||||||||||| ||| |||||||||||| |||||||    
T  32872919 aaaatatttgtagttaagatttattgtgaagtgggataacatcaaagcatagagactattatg 32872857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 539 - 597
Target Start/End: Original strand, 2375027 - 2375085
Alignment:
Q  539 tttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacatt 597  Q
    |||||||||||||||||||||||| |||||| |||| ||||||  ||||||||||||||    
T  2375027 tttgttttgtttcaaaataataaactccctataataattagtcaatttaatggaacatt 2375085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 556 - 619
Target Start/End: Original strand, 10920234 - 10920297
Alignment:
Q  556 taataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 619  Q
    ||||||| | ||||||||| |||||| ||||||||||||||||||||| | ||||| |||||||    
T  10920234 taataaaattcctagaataattagtctgtttaatggaacattaagtatgagttaatcgtgagac 10920297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 425 - 463
Target Start/End: Original strand, 24636604 - 24636642
Alignment:
Q  425 ctgttggagtaagccctaatagccaatctatattgattg 463  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  24636604 ctgttggagtaagccataatagccaatctatattgattg 24636642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 518 - 725
Target Start/End: Original strand, 29308890 - 29309097
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29308890 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 29308989  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29308990 agcccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 29309089  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  29309090 ctgatgat 29309097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 518 - 725
Target Start/End: Original strand, 29315850 - 29316057
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29315850 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 29315949  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29315950 agcccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 29316049  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  29316050 ctgatgat 29316057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 520 - 725
Target Start/End: Complemental strand, 16566525 - 16566320
Alignment:
Q  520 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16566525 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 16566426  T
Q  620 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagact 719  Q
    ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  16566425 cccgttaaacataaggaaactattcttaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 16566326  T
Q  720 gatgat 725  Q
    ||||||    
T  16566325 gatgat 16566320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 518 - 725
Target Start/End: Complemental strand, 27381459 - 27381252
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27381459 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 27381360  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  27381359 accccattaaacatatggaaactattctcaaagtatccatagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtaga 27381260  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  27381259 ctgatgat 27381252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 518 - 725
Target Start/End: Complemental strand, 27471842 - 27471635
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27471842 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 27471743  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  27471742 accccattaaacatatggaaactattctcaaagtatccatagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtaga 27471643  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  27471642 ctgatgat 27471635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 520 - 725
Target Start/End: Complemental strand, 17684674 - 17684469
Alignment:
Q  520 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17684674 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 17684575  T
Q  620 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagact 719  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17684574 cccgttaaacataaggaaactattctcaaagtatccgtagtcaagctttgatgagaagtgggatatcattaaagcatagagactattatgtaggtagact 17684475  T
Q  720 gatgat 725  Q
    ||||||    
T  17684474 gatgat 17684469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 518 - 725
Target Start/End: Complemental strand, 17691647 - 17691440
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17691647 acaaggcatttctttattgattttgttttctttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 17691548  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||    
T  17691547 accccattaaacataaggaaactattcttaaagtatccgtagtcaagctttagtgagaagtgggatatcattaaagcataaagactattatgtaggtaga 17691448  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  17691447 ctgatgat 17691440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 520 - 725
Target Start/End: Complemental strand, 189182 - 188977
Alignment:
Q  520 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  189182 aaggcatttctttattgattttgttttgtttcaaaataataaagtccttagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 189083  T
Q  620 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagact 719  Q
    |||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||    
T  189082 cccattaaacataaggaaactattcttaaagtatttgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtgggtagact 188983  T
Q  720 gatgat 725  Q
    ||||||    
T  188982 gatgat 188977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 520 - 725
Target Start/End: Complemental strand, 25537364 - 25537159
Alignment:
Q  520 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  25537364 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaataattagtccgtttaatggaacattaagtataactttattgtgagac 25537265  T
Q  620 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagact 719  Q
    ||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  25537264 cccgttaaacataaggaaactattcttaaagtattcgtagtcaagctttattgagaagtgggatatcattaaagcataaagactattatgtaggtagact 25537165  T
Q  720 gatgat 725  Q
    ||||||    
T  25537164 gatgat 25537159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 520 - 725
Target Start/End: Original strand, 11651725 - 11651930
Alignment:
Q  520 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 619  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11651725 aaggcatttctttattgattttgatttgtttcaaaataataaagtccctaaaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 11651824  T
Q  620 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagact 719  Q
    ||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||    
T  11651825 cccattaaaaataaggaaactattctaaaagtatcagtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtgggtagact 11651924  T
Q  720 gatgat 725  Q
    ||||||    
T  11651925 gatgat 11651930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 520 - 725
Target Start/End: Complemental strand, 13359474 - 13359269
Alignment:
Q  520 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 619  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| |||| ||    
T  13359474 aaggcatttatttatttattttgttttgtttcaaaataataaagtccctagaatagttagttcgcttaatggagcattaagtataacttaatcgtgaaac 13359375  T
Q  620 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagact 719  Q
     |||||||||||||  | | |||| | ||||||||||||||||| |||||||| ||| ||||| | ||||||||| |||||| |||||| | | ||||||    
T  13359374 tccattaaacataaaaacattatttttaaagtatccgtagtcaacctttattgtgaaatgggacaacattaaagcgtagagactattatatggatagact 13359275  T
Q  720 gatgat 725  Q
    ||||||    
T  13359274 gatgat 13359269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 557 - 725
Target Start/End: Complemental strand, 20553755 - 20553587
Alignment:
Q  557 aataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaagtatccg 656  Q
    ||||||||| |||| |||| |||||||||||||| || ||||||||  ||||||| |||||| ||||||||| ||||| | | |||||| |||| |||||    
T  20553755 aataaagtctctaggatagctagtccgtttaatgaaatattaagtacgacttaatcgtgagatcccattaaatataagaatattattcttaaagcatccg 20553656  T
Q  657 tagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactgatgat 725  Q
    |||| ||  ||||||| |||||| ||||  ||||||||||| ||| | |||||| ||||||||||||||    
T  20553655 tagtgaatttttattgtgaagtgagataaaattaaagcataaagatttttatgttggtagactgatgat 20553587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 425 - 480
Target Start/End: Original strand, 11651629 - 11651684
Alignment:
Q  425 ctgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatca 480  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11651629 ctgttggagtaagccctaatagccaatctatattgattgagtttggctttgtatca 11651684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 423 - 482
Target Start/End: Complemental strand, 17691742 - 17691683
Alignment:
Q  423 tactgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17691742 tacttttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 17691683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 27381551 - 27381495
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27381551 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtttcatg 27381495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 27471934 - 27471878
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27471934 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtttcatg 27471878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 541 - 725
Target Start/End: Original strand, 27925772 - 27925961
Alignment:
Q  541 tgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaac---attaa--gtataacttaattgtgagaccccattaaacataagg 635  Q
    |||||||||||||||||||||||||| |||||||  ||||  |||||| |||||   |||||  || | ||||||| ||||||| |||||||||  |||     
T  27925772 tgttttgtttcaaaataataaagtccttagaataactagtatgtttaacggaacataattaagtgtgtgacttaatcgtgagactccattaaactaaaga 27925871  T
Q  636 aaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactgatgat 725  Q
    ||| |||||| ||||||||  ||||||| |||||||  ||||||| ||| |||| ||||| | ||| |||||||| | || |||||||||    
T  27925872 aaattattcttaaagtatctctagtcaaactttatttggaagtggtatagcattgaagcacaaagactattatgtggataaactgatgat 27925961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 29308798 - 29308854
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29308798 tgttggaataagccctaatagccaatctatattgattggttttggctttgtatcatg 29308854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 29315758 - 29315814
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29315758 tgttggaataagccctaatagccaatctatattgattggttttggctttgtatcatg 29315814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 537 - 710
Target Start/End: Original strand, 8509941 - 8510115
Alignment:
Q  537 attttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgaga-ccccattaaacataagg 635  Q
    ||||| |||||||| ||||||||||||||  ||||||| ||||||  ||| ||||||||||| |||  |||||||| ||||| |||||||||| || |||    
T  8509941 attttattttgttttaaaataataaagtctatagaataattagtctatttgatggaacattatgtacgacttaattatgagacccccattaaatatgagg 8510040  T
Q  636 aaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgt 710  Q
    |   |||| | |||||||  ||||| ||||||||||  ||| || |||| ||||||| |||| ||| ||||||||    
T  8510041 atgatattattaaagtatatgtagttaagctttattatgaaatgagatagcattaaaacataaagactattatgt 8510115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 556 - 725
Target Start/End: Complemental strand, 17850663 - 17850495
Alignment:
Q  556 taataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaagtatcc 655  Q
    |||||||||||||| ||||| ||||  ||||  |||||||||| |||  |||||||||||| | || |||||| | ||||| |||||||| ||| |||||    
T  17850663 taataaagtccctataatagctagtttgtttgttggaacattatgtaagacttaattgtgatatccaattaaaaacaaggacactattcttaaattatcc 17850564  T
Q  656 gtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactgatgat 725  Q
     |||||||||||| ||| |||||   ||| |||| ||| ||| ||| |||||| | ||||||||||||||    
T  17850563 atagtcaagcttt-ttgtgaagtcaaataacattcaagtatatagactattatatgggtagactgatgat 17850495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 17684768 - 17684712
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||    
T  17684768 tgttggaataagccctaatagccaatctatgttgaatgggtttggctttgtatcatg 17684712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 25537461 - 25537405
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||    
T  25537461 tgttggattaagccctaatagccaatctatattgactgagtttggctttgtatcatg 25537405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 430 - 482
Target Start/End: Complemental strand, 13359564 - 13359512
Alignment:
Q  430 ggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    |||||||| |||||||||||||||||||| |||||||||| ||||||||||||    
T  13359564 ggagtaagtcctaatagccaatctatattcattgggtttgactttgtatcatg 13359512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 431 - 482
Target Start/End: Complemental strand, 16566614 - 16566563
Alignment:
Q  431 gagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||||||||||||||||||||| ||||||| ||||| ||||||||||||    
T  16566614 gagtaagccctaatagccaatctatgttgattgagtttgactttgtatcatg 16566563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 525 - 580
Target Start/End: Complemental strand, 31258120 - 31258065
Alignment:
Q  525 atttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagt 580  Q
    |||||||||||| |||||||||||||||||||||||||||| ||| |||| |||||    
T  31258120 atttctttattgcttttgttttgtttcaaaataataaagtctctaaaataattagt 31258065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 556 - 724
Target Start/End: Complemental strand, 20736773 - 20736604
Alignment:
Q  556 taataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaa-actattctcaaa-gtat 653  Q
    ||||||||| |||||||||| |||| ||| |||||| | ||||||| | |||||||  |||||   |||||| ||||| ||| | |||||| ||| ||||    
T  20736773 taataaagttcctagaatagatagttcgtgtaatggtatattaagtttgacttaatcatgagattacattaa-cataaagaacattattcttaaatgtat 20736675  T
Q  654 ccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactgatga 724  Q
    | |||||||||||||| | |||| |||||||  | |||||| | |||| ||||||||| ||||||||||||    
T  20736674 ctgtagtcaagctttaataagaactgggataataataaagcgtcgagactattatgtatgtagactgatga 20736604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 189280 - 189221
Alignment:
Q  426 tgttggagtaagccctaatagccaatcta---tattgattgggtttggctttgtatcatg 482  Q
    ||||||||||||||||||||  |||||||   ||||||||||||||||||||||||||||    
T  189280 tgttggagtaagccctaataatcaatctagtatattgattgggtttggctttgtatcatg 189221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 16394540 - 16394484
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    |||||||||||   ||||||| |||||||||||||||| ||||| ||||||||||||    
T  16394540 tgttggagtaacttctaatagacaatctatattgattgagtttgactttgtatcatg 16394484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 534 - 599
Target Start/End: Complemental strand, 22259990 - 22259925
Alignment:
Q  534 ttgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaa 599  Q
    ||||||||||| |||| |||||||||||| |||||| ||||  |||||| ||||||  ||||||||    
T  22259990 ttgattttgttatgttgcaaaataataaactccctaaaataactagtccatttaatataacattaa 22259925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 518 - 725
Target Start/End: Complemental strand, 21330455 - 21330248
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21330455 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 21330356  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  21330355 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtgga 21330256  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  21330255 ctgatgat 21330248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 518 - 725
Target Start/End: Original strand, 18796506 - 18796713
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    |||||| |||| ||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18796506 acaaggaatttatttgtttattttgttttgtttcaaaataacaaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 18796605  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    ||| | || |||||||||| | |||||| ||| |||| ||||||||||||||||| ||||||| ||||||||||||||| |||| |||||||| ||||||    
T  18796606 acctcttttaacataaggatattattcttaaattatctgtagtcaagctttattgtgaagtggtatatcattaaagcattgagactattatgtgggtaga 18796705  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  18796706 ctgatgat 18796713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 520 - 725
Target Start/End: Original strand, 18619807 - 18620011
Alignment:
Q  520 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 619  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||| |||||||| | |||||||| |||||     
T  18619807 aaggaatttctttgttgattttgttttgtttcaaaataataaagtccctataataattagtctgtttaatggagcattaagtgtgacttaattatgaga- 18619905  T
Q  620 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagact 719  Q
    ||||||||||| ||||| | |||||| |||||||| || ||||| |||||||| |||  ||||||  ||||||||||| ||| |||||||| ||||| |     
T  18619906 cccattaaacaaaaggatattattcttaaagtatctgtggtcaaactttattgtgaaaagggataatattaaagcatatagactattatgtgggtaggcc 18620005  T
Q  720 gatgat 725  Q
    ||||||    
T  18620006 gatgat 18620011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 524 - 663
Target Start/End: Complemental strand, 19692737 - 19692598
Alignment:
Q  524 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 623  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||  | |||||||  ||||| | ||    
T  19692737 catttctttattgattttgttttgtttcaaaataatgaagtccctagaataattagtctgtttaatggaacattaagcctgacttaatcatgagatctca 19692638  T
Q  624 ttaaacataaggaaactattctcaaagtatccgtagtcaa 663  Q
    ||||||  ||||||| |||||| ||||||||| |||||||    
T  19692637 ttaaactaaaggaaattattcttaaagtatccttagtcaa 19692598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 583 - 710
Target Start/End: Original strand, 20977957 - 20978084
Alignment:
Q  583 gtttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtggga 682  Q
    |||||||||||||||||| |||| |||||  ||||| ||||||||| ||||||||| |||||| |||  |||||||||||||||||| || |||||| ||    
T  20977957 gtttaatggaacattaagaataatttaatcatgagatcccattaaaaataaggaaattattcttaaaacatccgtagtcaagctttaatgtgaagtgaga 20978056  T
Q  683 tatcattaaagcatagagagtattatgt 710  Q
    ||||| ||||||||||||| ||||||||    
T  20978057 tatcactaaagcatagagactattatgt 20978084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 552 - 725
Target Start/End: Original strand, 36270199 - 36270373
Alignment:
Q  552 aaaataataaagtccctagaatagttagtccgtttaa-tggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaag 650  Q
    |||||||||||||||||||||||||||||    |||| || ||  |||||| | ||||||| |||||||  ||||||||| || || |||||||| |||     
T  36270199 aaaataataaagtccctagaatagttagtttacttaaatgaaatgttaagtgtgacttaatcgtgagacatcattaaacacaatgacactattcttaaaa 36270298  T
Q  651 tatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactgatgat 725  Q
     ||||||| |||||||||| || |||| |||||| |||||||| ||| ||| |||| ||| ||||||||||||||    
T  36270299 catccgtaatcaagctttagtgtgaagagggataacattaaagtataaagactattgtgtgggtagactgatgat 36270373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 21330549 - 21330493
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21330549 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 21330493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 552 - 725
Target Start/End: Original strand, 18822115 - 18822290
Alignment:
Q  552 aaaataataaagtccctagaatagttagtccgtttaa-tggaaca-ttaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaa 649  Q
    ||||||||||||||  |||||| |||||| ||||||| ||||| | |||||| |  |||||| ||||||| |||||||||| ||||| |||||||| |||    
T  18822115 aaaataataaagtctatagaattgttagttcgtttaaatggaaaaattaagtgtggcttaatcgtgagacaccattaaacacaaggacactattcttaaa 18822214  T
Q  650 gtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagactgatgat 725  Q
      ||  ||| |||||||||| |  |||||||||||||||||||||| | ||| ||||||||   ||||||||||||    
T  18822215 acatatgtaatcaagctttagtttgaagtgggatatcattaaagcagatagattattatgtcaatagactgatgat 18822290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 19692829 - 19692773
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    |||||||||||||| ||||||||||||| |||| ||| ||||||| |||||||||||    
T  19692829 tgttggagtaagccttaatagccaatctgtatttattaggtttggttttgtatcatg 19692773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 554 - 709
Target Start/End: Complemental strand, 36802820 - 36802664
Alignment:
Q  554 aataataaagtccctagaatagttagtccgtttaa-tggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaagta 652  Q
    ||||||||||||| | ||||||||| | ||||||| ||||| ||||| | | |||||||||  |||   ||||||||| || || | |||||| |||  |    
T  36802820 aataataaagtcctttgaatagttaattcgtttaaatggaatattaaatgttacttaattgcaagatatcattaaacacaatgacattattcttaaaaca 36802721  T
Q  653 tccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatg 709  Q
    |||||| ||||| || | ||  |||||||||| |||||||||||| ||| |||||||    
T  36802720 tccgtaatcaagattcagtgtaaagtgggataacattaaagcatatagattattatg 36802664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 518 - 725
Target Start/End: Original strand, 18288 - 18495
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  18288 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaattgaacattaagtataacttaattgtgag 18387  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  18388 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtaga 18487  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  18488 ctgatgat 18495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 425 - 482
Target Start/End: Original strand, 18195 - 18252
Alignment:
Q  425 ctgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18195 ctgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 18252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 188; Significance: 1e-101; HSPs: 2)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 518 - 725
Target Start/End: Original strand, 7107 - 7314
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7107 acaaggtatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatagaacattaagtataacttaattgtgag 7206  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7207 accccattaaacataatgaaactattctaaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 7306  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  7307 ctgatgat 7314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 7015 - 7071
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7015 tgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 7071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657 (Bit Score: 184; Significance: 3e-99; HSPs: 2)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 518 - 725
Target Start/End: Original strand, 993 - 1200
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  993 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctaaaatagttagtccgtttaatgaaacattaagtataacttaattgtgag 1092  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1093 accccattaaacataaagaaactattctcaaagtatctgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 1192  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  1193 ctgatgat 1200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 901 - 957
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  901 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 180; Significance: 8e-97; HSPs: 2)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 518 - 725
Target Start/End: Complemental strand, 26197 - 25990
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 617  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  26197 acaagacatttctttattgattttgttttgtttcaaaataataaagtccttagaatagttagtccatttaatggaacattaaatataacttaattgtgag 26098  T
Q  618 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtaga 717  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||    
T  26097 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgaaaagtgggatatcattaaagcatagcgactattatgtaggtaga 25998  T
Q  718 ctgatgat 725  Q
    ||||||||    
T  25997 ctgatgat 25990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 426 - 481
Target Start/End: Complemental strand, 26286 - 26231
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcat 481  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26286 tgttggaataagccctaatagtcaatctatattgattgggtttggctttgtatcat 26231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 166; Significance: 2e-88; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 520 - 725
Target Start/End: Original strand, 5531 - 5736
Alignment:
Q  520 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 619  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5531 aaggcatttctttattgatttatttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 5630  T
Q  620 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagtattatgtaggtagact 719  Q
    ||| ||||||||||||||| |||||| |||||||  |||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||    
T  5631 cccgttaaacataaggaaattattcttaaagtatatgtagtcaagctttattgagaagtgggatatcattaaagcataaagactattatgtgggtagact 5730  T
Q  720 gatgat 725  Q
    ||||||    
T  5731 gatgat 5736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 5436 - 5492
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5436 tgttgaagtaagccctaatagccaatctatattgtttgggtttggctttgtatcatg 5492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 144; Significance: 2e-75; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 520 - 703
Target Start/End: Complemental strand, 230545 - 230363
Alignment:
Q  520 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  230545 aaggcatttctttattgattttgttttgtttcaaaataataaagttcttataatagttagtccgtttaatggaacattaagtataacttaattgtgagac 230446  T
Q  620 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagagt 703  Q
    ||| |||||||||||||||| ||||| |||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  230445 ccc-ttaaacataaggaaaccattcttaaagtatttgtagtcaagatttattgagaagtgggatatcattaaagcatagagagt 230363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 425 - 482
Target Start/End: Complemental strand, 230641 - 230584
Alignment:
Q  425 ctgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  230641 ctgttggagtaagcaataatagccaatctatattgattgggtttggctttgtatcatg 230584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 61; Significance: 8e-26; HSPs: 2)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 518 - 582
Target Start/End: Complemental strand, 8510 - 8446
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtcc 582  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8510 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtcc 8446  T

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Target: scaffold0176; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 8602 - 8546
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8602 tgttggaataagccctaatagccaatctatattgattgggttcggctttgtatcatg 8546  T

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Target: scaffold0203 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 23825 - 23769
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23825 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 23769  T

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Target: scaffold0326 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: scaffold0326
Description:

Target: scaffold0326; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 16523 - 16579
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16523 tgttggaataagccctaatagccaatctatattgattgggtttggctttatatcatg 16579  T

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Target: scaffold0326; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 518 - 551
Target Start/End: Original strand, 16615 - 16648
Alignment:
Q  518 acaaggcatttctttattgattttgttttgtttc 551  Q
    |||||||||||||||||||||||||||||| |||    
T  16615 acaaggcatttctttattgattttgttttgnttc 16648  T

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Target: scaffold0565 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 428 - 482
Target Start/End: Complemental strand, 10256 - 10202
Alignment:
Q  428 ttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||    
T  10256 ttggagtaagctctaatagccaatctatattgattgagtttgactttgtatcatg 10202  T

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Target: scaffold0565; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 537 - 568
Target Start/End: Complemental strand, 10158 - 10127
Alignment:
Q  537 attttgttttgtttcaaaataataaagtccct 568  Q
    ||||||||||||||||||||||||||||||||    
T  10158 attttgttttgtttcaaaataataaagtccct 10127  T

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Target: scaffold0637 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0637
Description:

Target: scaffold0637; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 425 - 482
Target Start/End: Original strand, 8943 - 9000
Alignment:
Q  425 ctgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    |||||||| ||||||| |||||||||||||| |||| |||||||||||||||||||||    
T  8943 ctgttggaataagcccaaatagccaatctatgttgaatgggtttggctttgtatcatg 9000  T

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Target: scaffold0705 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0705
Description:

Target: scaffold0705; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 97 - 41
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 482  Q
    ||||||| ||||||||||||||||||||||| ||||||  |||||||||||||||||    
T  97 tgttggaataagccctaatagccaatctataatgattgattttggctttgtatcatg 41  T

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Target: scaffold0170 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 426 - 478
Target Start/End: Original strand, 5878 - 5930
Alignment:
Q  426 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtat 478  Q
    |||||||||||| | ||||||||||||||||||||||| ||||| ||||||||    
T  5878 tgttggagtaagtcataatagccaatctatattgattgagtttgactttgtat 5930  T

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Target: scaffold0767 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 424 - 462
Target Start/End: Complemental strand, 39 - 1
Alignment:
Q  424 actgttggagtaagccctaatagccaatctatattgatt 462  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  39 actgttggaataagccctaatagccaatctatattgatt 1  T

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Target: scaffold0032 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 547 - 619
Target Start/End: Original strand, 92194 - 92267
Alignment:
Q  547 gtttcaaaataataaagtccctagaatagttagtccgtttaa-tggaacattaagtataacttaattgtgagac 619  Q
    |||| ||| |||||||||| ||||||||  ||||   ||||| ||||||||||||||||||||||| |||||||    
T  92194 gttttaaagtaataaagtctctagaatatctagttattttaaatggaacattaagtataacttaatcgtgagac 92267  T

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