View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14220_low_2 (Length: 334)
Name: NF14220_low_2
Description: NF14220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14220_low_2 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 6 - 334
Target Start/End: Complemental strand, 16814687 - 16814360
Alignment:
| Q |
6 |
aatatcatatttgcatcaccttctttcaagcataacgatagagaataacttttgtgcataggctctttcctaaaaacttaatcctctaaagttaaacttg |
105 |
Q |
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| T |
16814687 |
aatatcatatttgcatcaccttctttcaagcataacgatagagaataacttttgtgcataggctctttcctaaaaacttaatcctctgaagttaaacttg |
16814588 |
T |
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| Q |
106 |
caccttcgccttgtaaagaagatttggttactgatattcgttcttcgatattttgactatgttttttgcgccaatcaagaagacaatcatttcaatcttt |
205 |
Q |
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| T |
16814587 |
catctttgccttgtaaagaagatttggttactgatattcgttcttcgatattttgactatgttttttgcgccaatcacgaagacaa-catttcaatcttt |
16814489 |
T |
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| Q |
206 |
taaatttttccttcaaaacataaccactataatcaataacttttccttcaacacttcacaagtcttccaaagccaaaaagatttggaaatcacttaatga |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
16814488 |
taaatttttccttcaaaacataaccactataatcaataacttttccttcaacacttcacaagtcttccaaagccaaaaagatttgaaaatcacttaatga |
16814389 |
T |
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| Q |
306 |
atttaaatatatccacacacattttcatg |
334 |
Q |
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| T |
16814388 |
atttaaatatatccacacacattttcatg |
16814360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 6 - 334
Target Start/End: Complemental strand, 16853967 - 16853639
Alignment:
| Q |
6 |
aatatcatatttgcatcaccttctttcaagcataacgatagagaataacttttgtgcataggctctttcctaaaaacttaatcctctaaagttaaacttg |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
16853967 |
aatatcatatttgcatcaccttctttcaagcataacgatagagaataacttttgtgcataggctctttcctaaaaacttaatcctctgaagttaaacttg |
16853868 |
T |
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| Q |
106 |
caccttcgccttgtaaagaagatttggttactgatattcgttcttcgatattttgactatgtt-ttttgcgccaatcaagaagacaatcatttcaatctt |
204 |
Q |
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|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||| |
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| T |
16853867 |
catctttgccttgtaaagaagatttggttactgatattcgttcttcgatattttgactatgtttttttgcgccaatcacgaagacaa-catttcaatctt |
16853769 |
T |
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| Q |
205 |
ttaaatttttccttcaaaacataaccactataatcaataacttttccttcaacacttcacaagtcttccaaagccaaaaagatttggaaatcacttaatg |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
16853768 |
ttaaatttttccttcaaaacataaccactataatcaataacttttccttcaacacttcacaagtcttccaaagccaaaaagatttgaaaatcacttaatg |
16853669 |
T |
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| Q |
305 |
aatttaaatatatccacacacattttcatg |
334 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
16853668 |
aatttaaatatatccacacacattttcatg |
16853639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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