View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14220_low_5 (Length: 238)
Name: NF14220_low_5
Description: NF14220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14220_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 36199499 - 36199720
Alignment:
| Q |
1 |
ttcttgattgattcagatatagagcatttgatgagtatcaaggaattgaagttgcttggaatcaggtcaagctgtatgatttcttacaaagtcctgaaga |
100 |
Q |
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| T |
36199499 |
ttcttgattgattcagatatagagcatttgatgagtatcaaggaattgaagttgcttggaatcaggtcaagctgtatgatttcttacaaagtcctgaaga |
36199598 |
T |
|
| Q |
101 |
tcttgaaaggctttactgtgaaattcatctcttgaaaacattgaaacacaaaaacattatgaaattttacacctcttgggtggatactgctaataggaat |
200 |
Q |
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| T |
36199599 |
tcttgaaaggctttactgtgaaattcatctcttgaaaacattgaaacacaaaaacattatgaaattttacacctcttgggtggatactgctaataggaat |
36199698 |
T |
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| Q |
201 |
attaactttgtcactgaaatgt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
36199699 |
attaactttgtcactgaaatgt |
36199720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 47006420 - 47006212
Alignment:
| Q |
14 |
cagatatagagcatttgatgagtatcaaggaattgaagttgcttggaatcaggtcaagctgtatgatttcttacaaagtcctgaagatcttgaaaggctt |
113 |
Q |
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| T |
47006420 |
cagatttagagcatttgatgagtatgaaggaatagaagtagcatggaatcaagtaaagctttatgattttttgcaaaattctgaagaccttgagaggtta |
47006321 |
T |
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| Q |
114 |
tactgtgaaattcatc-tcttgaaaacattgaaacacaaaaacattatgaaattttacacctcttgggtggatactgctaataggaatattaactttgtc |
212 |
Q |
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| T |
47006320 |
tactgtgaaattcatcttcttg-agacattgaagcacaagaatatcatgaagttctacacttcatgggttgatagtaccaacagaaacattaactttgtc |
47006222 |
T |
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| Q |
213 |
actgaaatgt |
222 |
Q |
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||||| |||| |
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| T |
47006221 |
actgagatgt |
47006212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 7 - 218
Target Start/End: Complemental strand, 47354883 - 47354672
Alignment:
| Q |
7 |
attgattcagatatagagcatttgatgagtatcaaggaattgaagttgcttggaatcaggtcaagctgtatgatttcttacaaagtcctgaagatcttga |
106 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||| || ||||||||| |||||| || |||||||| || |
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| T |
47354883 |
attgatgcagatatagagcatttgatgagtatcaagggattgaagttgcttggaatcaaatcaaactatatgatttcctacaaaaccccgaagatctcga |
47354784 |
T |
|
| Q |
107 |
aaggctttactgtgaaattcatctcttgaaaacattgaaacacaaaaacattatgaaattttacacctcttgggtggatactgctaataggaatattaac |
206 |
Q |
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||||||||||| |||||||||||| | || || ||||| ||||||||||||||||||||||| || |||||||| |||||||| ||||||||||| ||| |
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| T |
47354783 |
gaggctttactgcgaaattcatctcctcaagacgttgaagcacaaaaacattatgaaattttatacttcttgggttgatactgcaaataggaatatcaac |
47354684 |
T |
|
| Q |
207 |
tttgtcactgaa |
218 |
Q |
| |
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|||||||||||| |
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|
| T |
47354683 |
tttgtcactgaa |
47354672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 34451485 - 34451552
Alignment:
| Q |
15 |
agatatagagcatttgatgagtatcaaggaattgaagttgcttggaatcaggtcaagctgtatgattt |
82 |
Q |
| |
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||||||||||| |||||||||| ||||||||||||| |||||||||||||| ||| ||| |||||| |
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| T |
34451485 |
agatatagagcttttgatgagttagaaggaattgaagtggcttggaatcaggttaaggtgtctgattt |
34451552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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