View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14220_low_6 (Length: 231)

Name: NF14220_low_6
Description: NF14220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14220_low_6
NF14220_low_6
[»] chr1 (9 HSPs)
chr1 (10-151)||(8234312-8234453)
chr1 (11-87)||(12436941-12437018)
chr1 (14-67)||(29795261-29795314)
chr1 (20-93)||(50155536-50155609)
chr1 (181-216)||(8234480-8234515)
chr1 (31-69)||(11138797-11138835)
chr1 (21-67)||(46187345-46187391)
chr1 (43-84)||(46500825-46500867)
chr1 (29-69)||(16192260-16192300)
[»] chr8 (7 HSPs)
chr8 (34-91)||(36469445-36469503)
chr8 (44-102)||(2987176-2987234)
chr8 (14-63)||(6915516-6915565)
chr8 (29-99)||(36469575-36469647)
chr8 (36-69)||(3093974-3094007)
chr8 (29-70)||(7681026-7681067)
chr8 (31-67)||(35447591-35447627)
[»] chr4 (5 HSPs)
chr4 (34-91)||(37687257-37687315)
chr4 (40-97)||(41679197-41679254)
chr4 (14-93)||(51234254-51234334)
chr4 (31-70)||(32934158-32934197)
chr4 (46-93)||(27395443-27395491)
[»] chr2 (10 HSPs)
chr2 (29-99)||(13478786-13478857)
chr2 (34-91)||(1090304-1090362)
chr2 (34-91)||(6923866-6923924)
chr2 (34-91)||(28779842-28779900)
chr2 (31-72)||(6686783-6686824)
chr2 (14-70)||(34883947-34884003)
chr2 (14-69)||(6788487-6788542)
chr2 (30-69)||(29488707-29488746)
chr2 (12-63)||(43191975-43192026)
chr2 (15-69)||(39095109-39095163)
[»] chr7 (8 HSPs)
chr7 (23-70)||(3116846-3116893)
chr7 (44-125)||(5358199-5358282)
chr7 (43-93)||(5429527-5429578)
chr7 (19-62)||(29197162-29197205)
chr7 (44-101)||(43510236-43510294)
chr7 (10-93)||(39608578-39608662)
chr7 (24-69)||(37630236-37630281)
chr7 (47-117)||(30601298-30601370)
[»] chr3 (4 HSPs)
chr3 (14-72)||(34979177-34979235)
chr3 (14-121)||(21568534-21568643)
chr3 (34-66)||(31186677-31186709)
chr3 (44-120)||(47199703-47199782)
[»] chr5 (6 HSPs)
chr5 (29-117)||(23159029-23159119)
chr5 (29-69)||(19342532-19342572)
chr5 (14-58)||(28503836-28503880)
chr5 (23-93)||(27001396-27001467)
chr5 (23-69)||(12403114-12403160)
chr5 (29-69)||(33855354-33855394)
[»] scaffold0022 (1 HSPs)
scaffold0022 (29-74)||(83073-83118)
[»] chr6 (2 HSPs)
chr6 (29-69)||(998643-998683)
chr6 (31-63)||(9762631-9762663)


Alignment Details
Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 10 - 151
Target Start/End: Original strand, 8234312 - 8234453
Alignment:
Q  10 agattattctgattaacagaatgcacaattaaaaactattttaaaattttgatatattgagaattattgtaactaatcattacatatttaggacgaaagt 109  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8234312 agattattttgattaacagaatgcacaattaaaaactattttaaaattttgatatattgaggattattgtaactaatcattacatatttaggacgaaagt 8234411  T
Q  110 aactattatcccatttgtaaattggatagtaggttctctttg 151  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  8234412 aactattatcccatttgtaaattggatagtaggttctctttg 8234453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 12436941 - 12437018
Alignment:
Q  11 gattattctgattaacagaatgcacaattaaaaactattttaaaattttgatatattgaga-attattgtaactaatc 87  Q
    ||||||| |||||||  ||||||||||| || ||||||||| ||||||||||||| | | | ||||||||||||||||    
T  12436941 gattattttgattaatggaatgcacaatcaataactattttgaaattttgatataatcaaagattattgtaactaatc 12437018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 29795261 - 29795314
Alignment:
Q  14 tattctgattaacagaatgcacaattaaaaactattttaaaattttgatatatt 67  Q
    |||| ||||||||| | |||||||| ||| ||||||||||||||||||||||||    
T  29795261 tattttgattaacatagtgcacaatcaaatactattttaaaattttgatatatt 29795314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 50155609 - 50155536
Alignment:
Q  20 gattaacagaatgcacaattaaaaactattttaaaattttgatatattgagaattattgtaactaatcattaca 93  Q
    |||||||| | || ||||| |||||||||||||||||||||||| ||||| || |||| | |||| ||||||||    
T  50155609 gattaacaaagtgtacaatcaaaaactattttaaaattttgatacattgaaaactattatgactactcattaca 50155536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 216
Target Start/End: Original strand, 8234480 - 8234515
Alignment:
Q  181 ctcaaagggacgtgatcgtaaatcaatgtatttttt 216  Q
    |||||||||||||||||||||||| |||||||||||    
T  8234480 ctcaaagggacgtgatcgtaaatctatgtatttttt 8234515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 11138797 - 11138835
Alignment:
Q  31 tgcacaattaaaaactattttaaaattttgatatattga 69  Q
    ||||||||||||||||||||| |||||| ||||||||||    
T  11138797 tgcacaattaaaaactattttgaaatttcgatatattga 11138835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 46187345 - 46187391
Alignment:
Q  21 attaacagaatgcacaattaaaaactattttaaaattttgatatatt 67  Q
    ||||||| | |||||||| ||||| ||||||||||||||||||||||    
T  46187345 attaacatagtgcacaatcaaaaattattttaaaattttgatatatt 46187391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 46500825 - 46500867
Alignment:
Q  43 aactattttaaaattttgatatattg-agaattattgtaacta 84  Q
    |||||||||||||||||||||||||| |||| |||||||||||    
T  46500825 aactattttaaaattttgatatattgtagaactattgtaacta 46500867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 16192260 - 16192300
Alignment:
Q  29 aatgcacaattaaaaactattttaaaattttgatatattga 69  Q
    |||||||||| | |||||||||||||||||||||| |||||    
T  16192260 aatgcacaatcagaaactattttaaaattttgatacattga 16192300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 36469503 - 36469445
Alignment:
Q  34 acaattaaaaactattttaaaattttgatatattga-gaattattgtaactaatcatta 91  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36469503 acaatcaaaaactattttaaaattttgatatattgaggaattattgtaactaatcatta 36469445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 2987176 - 2987234
Alignment:
Q  44 actattttaaaattttgatatattgagaattattgtaactaatcattacatatttagga 102  Q
    |||||||||||||||||||| |||||||| |||||| ||||||| || || ||||||||    
T  2987176 actattttaaaattttgatacattgagaactattgtgactaatcgtttcacatttagga 2987234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 6915516 - 6915565
Alignment:
Q  14 tattctgattaacagaatgcacaattaaaaactattttaaaattttgata 63  Q
    |||| ||||||||| |||||||||| ||||| ||||||||||||||||||    
T  6915516 tattttgattaacataatgcacaatcaaaaattattttaaaattttgata 6915565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 36469575 - 36469647
Alignment:
Q  29 aatgcacaattaaaaactattttaaaattttgatatatt--gagaattattgtaactaatcattacatattta 99  Q
    |||||||||||||  |||||||||||||||||||| |||   ||||||||| | |||| ||||||||||||||    
T  36469575 aatgcacaattaaggactattttaaaattttgatacattaaaagaattattatgactactcattacatattta 36469647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 69
Target Start/End: Original strand, 3093974 - 3094007
Alignment:
Q  36 aattaaaaactattttaaaattttgatatattga 69  Q
    ||||||| ||||||||||||||||||||||||||    
T  3093974 aattaaagactattttaaaattttgatatattga 3094007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 7681026 - 7681067
Alignment:
Q  29 aatgcacaattaaaaactattttaaaattttgatatattgag 70  Q
    |||||||||| ||| |||||||||||||||||||| ||||||    
T  7681026 aatgcacaatcaaatactattttaaaattttgatacattgag 7681067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 35447627 - 35447591
Alignment:
Q  31 tgcacaattaaaaactattttaaaattttgatatatt 67  Q
    |||||||| |||||||||||||||||||||| |||||    
T  35447627 tgcacaatcaaaaactattttaaaattttgagatatt 35447591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 37687257 - 37687315
Alignment:
Q  34 acaattaaaaactattttaaaattttgatatattgag-aattattgtaactaatcatta 91  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37687257 acaatcaaaaactattttaaaattttgatatattgagaaattattgtaactaatcatta 37687315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 41679197 - 41679254
Alignment:
Q  40 aaaaactattttaaaattttgatatattgagaattattgtaactaatcattacatatt 97  Q
    ||||| |||||||||||||||||||||||| ||||||||| |||| |  |||||||||    
T  41679197 aaaaattattttaaaattttgatatattgaaaattattgtgactactagttacatatt 41679254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 51234334 - 51234254
Alignment:
Q  14 tattctgattaacagaatgcacaattaaaaactattttaaaattttgatatatt-gagaattattgtaactaatcattaca 93  Q
    |||| ||| ||||| |||||||||| | | |||||||||||||||||||  |||  || ||||||||||||||||||||||    
T  51234334 tattttgactaacataatgcacaatgagagactattttaaaattttgatccattaaaggattattgtaactaatcattaca 51234254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 70
Target Start/End: Original strand, 32934158 - 32934197
Alignment:
Q  31 tgcacaattaaaaactattttaaaattttgatatattgag 70  Q
    |||||||| |||||||||||||||||||||||| ||||||    
T  32934158 tgcacaatcaaaaactattttaaaattttgatacattgag 32934197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 93
Target Start/End: Complemental strand, 27395491 - 27395443
Alignment:
Q  46 tattttaaaattttgatatattg-agaattattgtaactaatcattaca 93  Q
    ||||||||||||||||||||||| |||||| ||||||||| | ||||||    
T  27395491 tattttaaaattttgatatattgaagaattgttgtaactacttattaca 27395443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 13478786 - 13478857
Alignment:
Q  29 aatgcacaattaaaaactattttaaaattttgatatattgaga-attattgtaactaatcattacatattta 99  Q
    |||||||||| |||||||||||||||||||||||||||| | | |||||||| |||| ||||||||||||||    
T  13478786 aatgcacaatcaaaaactattttaaaattttgatatattcaaagattattgttactattcattacatattta 13478857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 1090304 - 1090362
Alignment:
Q  34 acaattaaaaactattttaaaattttgatatattga-gaattattgtaactaatcatta 91  Q
    ||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  1090304 acaatcaaaaactattttaaaattttgctatattgaggaattattgtaactaatcatta 1090362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 6923866 - 6923924
Alignment:
Q  34 acaattaaaaactattttaaaattttgatatattga-gaattattgtaactaatcatta 91  Q
    ||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6923866 acaatcaataactattttaaaattttgatatattgaggaattattgtaactaatcatta 6923924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 28779842 - 28779900
Alignment:
Q  34 acaattaaaaactattttaaaattttgatatattga-gaattattgtaactaatcatta 91  Q
    ||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28779842 acaatcaataactattttaaaattttgatatattgaggaattattgtaactaatcatta 28779900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 6686824 - 6686783
Alignment:
Q  31 tgcacaattaaaaactattttaaaattttgatatattgagaa 72  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  6686824 tgcacaatcaaaaactattttaaaattttgatatattgagaa 6686783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 34884003 - 34883947
Alignment:
Q  14 tattctgattaacagaatgcacaattaaaaactattttaaaattttgatatattgag 70  Q
    |||| ||| ||||||| |||||||||| | |||||||||||||||||||| ||||||    
T  34884003 tattttgactaacagagtgcacaattagagactattttaaaattttgatacattgag 34883947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 6788487 - 6788542
Alignment:
Q  14 tattctgattaacagaatgcacaattaaaaactattttaaaattttgatatattga 69  Q
    |||||||| ||||| | |||||||| | |||||||||||||||||||||| |||||    
T  6788487 tattctgactaacaaagtgcacaatcagaaactattttaaaattttgatacattga 6788542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 29488746 - 29488707
Alignment:
Q  30 atgcacaattaaaaactattttaaaattttgatatattga 69  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  29488746 atgcacaatcaaaaactattttaaaattttgatacattga 29488707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 43191975 - 43192026
Alignment:
Q  12 attattctgattaacagaatgcacaattaaaaactattttaaaattttgata 63  Q
    |||||| ||||||| | |||| ||||| ||||||||||||||||||||||||    
T  43191975 attattttgattaataaaatgtacaataaaaaactattttaaaattttgata 43192026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 39095163 - 39095109
Alignment:
Q  15 attctgattaacagaatgcacaattaaaaactattttaaaattttgatatattga 69  Q
    ||||| ||||||| |||||||||| | | |||||||||||||||||||| |||||    
T  39095163 attcttattaacaaaatgcacaatcagatactattttaaaattttgatacattga 39095109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 3116893 - 3116846
Alignment:
Q  23 taacagaatgcacaattaaaaactattttaaaattttgatatattgag 70  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||    
T  3116893 taacaaaatgcacatttaaaaactattttaaaattttgatatattgag 3116846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 5358282 - 5358199
Alignment:
Q  44 actattttaaaattttgatatattg-agaattattgtaactaatcattacatattta-ggacgaaagtaactattatcccattt 125  Q
    |||||||||||||||||||| |||| || | ||||||||||| |||||||| ||||| ||| |||||| |||||||||||||||    
T  5358282 actattttaaaattttgatacattgaaggactattgtaactattcattacacatttagggatgaaagtgactattatcccattt 5358199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 5429527 - 5429578
Alignment:
Q  43 aactattttaaaattttgatatattga-gaattattgtaactaatcattaca 93  Q
    ||||||||||||||||||||| ||||| ||||||||||| ||||||||||||    
T  5429527 aactattttaaaattttgatacattgaggaattattgtacctaatcattaca 5429578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 29197162 - 29197205
Alignment:
Q  19 tgattaacagaatgcacaattaaaaactattttaaaattttgat 62  Q
    ||||||||||| |||||||| |||||||||||||||||||||||    
T  29197162 tgattaacagagtgcacaatcaaaaactattttaaaattttgat 29197205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 43510294 - 43510236
Alignment:
Q  44 actattttaaaattttgatatattga-gaattattgtaactaatcattacatatttagg 101  Q
    ||||||||||||||||||||||| || |||||||||| |||| | ||||||||||||||    
T  43510294 actattttaaaattttgatatatcgacgaattattgtgactatttattacatatttagg 43510236  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 39608578 - 39608662
Alignment:
Q  10 agattattctgattaacagaatgcacaattaaaaactattttaaaattttgatatattg-agaattattgtaactaatcattaca 93  Q
    |||||||| ||| ||||| | || |||||| ||||||||||||||||||||||| |||| | || ||||||||||| || |||||    
T  39608578 agattattttgactaacaaattgtacaattcaaaactattttaaaattttgatacattgaaaaactattgtaactactccttaca 39608662  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 37630236 - 37630281
Alignment:
Q  24 aacagaatgcacaattaaaaactattttaaaattttgatatattga 69  Q
    |||| |||||||| ||||| ||||||||||| ||||||||||||||    
T  37630236 aacaaaatgcacatttaaagactattttaaatttttgatatattga 37630281  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 30601370 - 30601298
Alignment:
Q  47 attttaaaattttgatatattga-gaattattgtaactaatcattacatattta-ggacgaaagtaactatta 117  Q
    ||||||||||||||| | ||||| ||| |||| | ||||||||||||| ||||| |||| |||||||||||||    
T  30601370 attttaaaattttgaaacattgaagaactattatgactaatcattacacatttagggaccaaagtaactatta 30601298  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 34979177 - 34979235
Alignment:
Q  14 tattctgattaacagaatgcacaattaaaaactattttaaaattttgatatattgagaa 72  Q
    |||| ||| ||||| |||||||||||||||||||||||||||||| |||||| ||||||    
T  34979177 tattttgactaacaaaatgcacaattaaaaactattttaaaatttcgatatagtgagaa 34979235  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 21568534 - 21568643
Alignment:
Q  14 tattctgattaacagaatgcacaattaaaaactattttaaaattttgatatattgaga-attattgtaactaatcattacatattta-ggacgaaagtaa 111  Q
    |||| ||| ||||||| ||||| || ||| ||||||||||| |||||||| |||| || | |||||| |||| |||||||| ||  | |||||||||| |    
T  21568534 tattttgaataacagagtgcactatcaaagactattttaaatttttgatacattgggagactattgtcactattcattacacatgcagggacgaaagtga 21568633  T
Q  112 ctattatccc 121  Q
    ||||||||||    
T  21568634 ctattatccc 21568643  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 31186677 - 31186709
Alignment:
Q  34 acaattaaaaactattttaaaattttgatatat 66  Q
    ||||| |||||||||||||||||||||||||||    
T  31186677 acaatcaaaaactattttaaaattttgatatat 31186709  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 47199782 - 47199703
Alignment:
Q  44 actattttaaaattttgatatattg-agaattattgtaactaatcattacatattta--ggacgaaagtaactattatcc 120  Q
    |||||||| ||||||||||| |||| ||||||||||| |||  |||||||| ||| |  |||| ||||||||||||||||    
T  47199782 actattttgaaattttgatacattgaagaattattgtgacttctcattacacattcaagggactaaagtaactattatcc 47199703  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 23159119 - 23159029
Alignment:
Q  29 aatgcacaattaaaaactattttaaaattttgatatattga-gaattattgtaactaatcattacatattta-ggacgaaagtaactatta 117  Q
    |||||||||| ||| |||||||||||||||||||| ||||| | | |||| ||||||||||||||| ||| | |||| ||||| |||||||    
T  23159119 aatgcacaatcaaatactattttaaaattttgatacattgatggactattataactaatcattacacattcagggactaaagtgactatta 23159029  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 19342532 - 19342572
Alignment:
Q  29 aatgcacaattaaaaactattttaaaattttgatatattga 69  Q
    |||||||||| |||||||||||||||||||| |||||||||    
T  19342532 aatgcacaatcaaaaactattttaaaattttaatatattga 19342572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 28503880 - 28503836
Alignment:
Q  14 tattctgattaacagaatgcacaattaaaaactattttaaaattt 58  Q
    |||| ||| |||||||||||||||||||| |||||||||||||||    
T  28503880 tattttgactaacagaatgcacaattaaagactattttaaaattt 28503836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 27001396 - 27001467
Alignment:
Q  23 taacagaatgcacaattaaaaactattttaaaattttgatatattgaga-attattgtaactaatcattaca 93  Q
    ||||||| |||||||| | | ||||||||||||||||||||||| |||| | |||||| |||| ||||||||    
T  27001396 taacagagtgcacaatcagagactattttaaaattttgatatatcgagagactattgtgactactcattaca 27001467  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 12403160 - 12403114
Alignment:
Q  23 taacagaatgcacaattaaaaactattttaaaattttgatatattga 69  Q
    |||||||||||||||| || ||||||||||| ||||||||| |||||    
T  12403160 taacagaatgcacaatcaagaactattttaatattttgatacattga 12403114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 33855394 - 33855354
Alignment:
Q  29 aatgcacaattaaaaactattttaaaattttgatatattga 69  Q
    |||| ||||| |||||| |||||||||||||||||||||||    
T  33855394 aatgtacaatcaaaaacaattttaaaattttgatatattga 33855354  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 83073 - 83118
Alignment:
Q  29 aatgcacaattaaaaactattttaaaattttgatatattgagaatt 74  Q
    |||| ||||||||||| ||||||||||||| |||||||||| ||||    
T  83073 aatgtacaattaaaaattattttaaaatttcgatatattgaaaatt 83118  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 998643 - 998683
Alignment:
Q  29 aatgcacaattaaaaactattttaaaattttgatatattga 69  Q
    |||||||||||| | | ||||||||||||||||||||||||    
T  998643 aatgcacaattagatattattttaaaattttgatatattga 998683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 9762631 - 9762663
Alignment:
Q  31 tgcacaattaaaaactattttaaaattttgata 63  Q
    |||||||| ||||||||||||||||||||||||    
T  9762631 tgcacaatcaaaaactattttaaaattttgata 9762663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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