View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14221_high_3 (Length: 383)
Name: NF14221_high_3
Description: NF14221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14221_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 86 - 366
Target Start/End: Original strand, 26849085 - 26849368
Alignment:
| Q |
86 |
catgggtaaggatttatttttta---aaacaaaagttgttagtttgaaaactcaccaaaagaagaaaaggtttggtaattaacaaacccagttgatttac |
182 |
Q |
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| T |
26849085 |
catgggtaaggattttttttttttttaaacaaaagtcgttagttagaaaactcaccaaaagaagaaaaggtttggtaattaacaaacccagttgatttac |
26849184 |
T |
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| Q |
183 |
cacgaccctttttggaagcaaactcatttgtagacaaagtgaatcctggtggtgttgttagtattggtgttgttgttttaacaatcttcttgtaacttgg |
282 |
Q |
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| T |
26849185 |
cacgaccctttttggaagcaaactcatttgtagacaaagtgaatcctggtggtgatgttagtattggtgttgttgttttaacaatcttcttgtaacttgg |
26849284 |
T |
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| Q |
283 |
atttaggtttccatcagcatcatattttcttggtctacctctctttttcttaccaaacaaatccaaacttcctggtgttgttgt |
366 |
Q |
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| T |
26849285 |
atttaggtttccatcagcatcatattttcttggtctacctctctttttcttaccaaacaaatccaaacttcctggtgttgttgt |
26849368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 26849024 - 26849063
Alignment:
| Q |
24 |
acattttgagtacaagttcaaaactttaagattccattgt |
63 |
Q |
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| T |
26849024 |
acattttgagtacaagttcaaaactttaagattccattgt |
26849063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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