View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14221_high_7 (Length: 305)

Name: NF14221_high_7
Description: NF14221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14221_high_7
NF14221_high_7
[»] chr7 (1 HSPs)
chr7 (1-287)||(32223361-32223653)


Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 32223653 - 32223361
Alignment:
Q  1 gtggtggtgatggtggtggttagagaatgaccaaacaatgagtgacggatgtatattcaacaaagacgaaatttgttgcttcatttttctatacaggtgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32223653 gtggtggtgatggtggtggttagagaatgaccaaacaatgagtgacggatgtatattcaacaaagacgaaatttgttgcttcatttttctatacaggtgt 32223554  T
Q  101 tgctaaagttctgtaccttgcaccagaattcaatggcc-ttgttttaatttccatttctatttctactactagtggagctgtgaatcttgctttctttca 199  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32223553 tgctaaagttctgtaccttgcaccagaattcaatggcctttgttttaatttccatttctatttctactattagtggagctgtgaatcttgctttctttca 32223454  T
Q  200 tct-----tactacattaaccatatagtaataatttgaaattgaaagttgaaaactgggggagacctaaactagacaaattaaaacaggtaat 287  Q
    |||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32223453 tcttactatactacattaaccatatagtaataatttgaaattgaaagttgaaaactgggggagacctaaactagacaaattaaaacaggtaat 32223361  T

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