View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14221_low_3 (Length: 398)
Name: NF14221_low_3
Description: NF14221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14221_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 40225013 - 40224771
Alignment:
| Q |
18 |
tatccatcgtcggagactccattggatccaaatccttcagatgcagaagtatcactccattgctgatgtcgctcttcagcttaaaatagtagctgacnnn |
117 |
Q |
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| T |
40225013 |
tatccatcgtcggagactccattggatccaaatccttcagatgcagaagtatcactccattgctgatgtcgctcttcagcttaaaacagtagctgacaaa |
40224914 |
T |
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| Q |
118 |
nnnnntaccgttgaggaggttattcaaaacgacatcgttgtgatggaagaggaggaacagaaaacagaggagaaagtgatcgacggtggtggtgatgaac |
217 |
Q |
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| T |
40224913 |
aaaaataccgttgaggaggttattcaaaacgacatcgttgtgatggaagaggaggaacagaaaacagaggagaaagtgatcgacggtggtggtgatgaac |
40224814 |
T |
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| Q |
218 |
acgaggagtatgattcccctgagagtgagattactgattcagg |
260 |
Q |
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| T |
40224813 |
acgaggagtatgattcccctgagagtgagattactgattcagg |
40224771 |
T |
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Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 51588189 - 51588274
Alignment:
| Q |
18 |
tatccatcgtcggagactccattggatccaaatccttcagatgcagaagtatcactccattgctgatgtcgctcttcagcttaaaa |
103 |
Q |
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|||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||| |||| |
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| T |
51588189 |
tatccatcgtcgtagactccattggatccaaatctttcagatgcagaagtatcattccatagctgatgtcgctcttcagctaaaaa |
51588274 |
T |
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