View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14221_low_5 (Length: 352)
Name: NF14221_low_5
Description: NF14221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14221_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 17 - 338
Target Start/End: Original strand, 40593535 - 40593859
Alignment:
| Q |
17 |
aaaaccaaacaatgtgtaatgatttgcactacacaaaaatctagctaaaacattggaagcaaattttatctaccttcatttcaatt---ctcaagagtca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40593535 |
aaaaccaaacaatgtgtaatgatttgcactacacaaaaatctagctaaaacattggaagcaaattttatctaccttcatttcaataatgctcaagagtca |
40593634 |
T |
|
| Q |
114 |
agaccacattacaaggcacatgccaataatcatcctacaaagtcaagatgtctaagttgcacaccttcaacaccatgcctaagttccaatgtcaatgaaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40593635 |
agaccacattacaaggcacatgccaataatcatcctacaaagtcaagatgtctaagttgcacaccttcaacaccatgcctaagttccaatgtcaatgaaa |
40593734 |
T |
|
| Q |
214 |
cagatccaatccaagtgatctcacaacatcatgtccactatgtctatatggcaaaaaatccataagtgttccatccattcttgaactcattccacattcc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40593735 |
cagatccaatccaagtgatctcacaacatcatgtccactatgtctatatggcaaaaaatccataagtgttccatccattcttgaactcattccacattcc |
40593834 |
T |
|
| Q |
314 |
aatttatacctcttctctctactcc |
338 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
40593835 |
aatttatacctcttctctctactcc |
40593859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University