View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14221_low_7 (Length: 314)

Name: NF14221_low_7
Description: NF14221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14221_low_7
NF14221_low_7
[»] chr2 (9 HSPs)
chr2 (13-299)||(28651010-28651296)
chr2 (13-299)||(28642149-28642435)
chr2 (13-297)||(28670734-28671018)
chr2 (102-279)||(28691372-28691549)
chr2 (13-297)||(28674878-28675162)
chr2 (91-299)||(28696237-28696445)
chr2 (203-279)||(28717575-28717651)
chr2 (85-192)||(28741514-28741621)
chr2 (57-146)||(28733368-28733457)
[»] chr4 (1 HSPs)
chr4 (189-279)||(41238469-41238559)
[»] chr1 (1 HSPs)
chr1 (194-252)||(33769111-33769169)


Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 13 - 299
Target Start/End: Complemental strand, 28651296 - 28651010
Alignment:
Q  13 agaatatggagtaacaaaagttccacgcatgttctatcacgaacaatctgatatcaacaatggtgcagccagtgaattaaatccaaagcttagtatccct 112  Q
    |||| ||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28651296 agaaaatggagtaacaaaagttccacgcatgttctattgtgaacaatctgatatcaacaatggtgcagccagtgaattaaatccaaagcttagtatccct 28651197  T
Q  113 acaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcaagtgagaaatggggattctttcaagtaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28651196 acaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcatgtgagaaatggggattctttcaagtaa 28651097  T
Q  213 taaatcatggaattccagttcatgttttggatgagatgatcaaaggaacttgtagatttcatcaacaggatcctaaggtgaggaaag 299  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28651096 taaatcatggaattccagttcatgttttgcatgagatgatcaaaggaacttgtagatttcatcaacaggatcctaaggtgaggaaag 28651010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 299
Target Start/End: Complemental strand, 28642435 - 28642149
Alignment:
Q  13 agaatatggagtaacaaaagttccacgcatgttctatcacgaacaatctgatatcaacaatggtgcagccagtgaattaaatccaaagcttagtatccct 112  Q
    |||| ||||||||||||||||||||| ||||||||||   |||||||||  ||||||  ||| | |||  | ||||| |||| ||||||| |||||||||    
T  28642435 agaaaatggagtaacaaaagttccacacatgttctattgtgaacaatctagtatcaatgatgtttcagtgaatgaatcaaattcaaagctaagtatccct 28642336  T
Q  113 acaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcaagtgagaaatggggattctttcaagtaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28642335 acaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcatgtgagaaatggggattctttcaagtaa 28642236  T
Q  213 taaatcatggaattccagttcatgttttggatgagatgatcaaaggaacttgtagatttcatcaacaggatcctaaggtgaggaaag 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28642235 taaatcatggaattccagttcatgttttggatgagatgatcaaaggaacttgtagatttcatcaacaggatcctaaggtgaggaaag 28642149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 13 - 297
Target Start/End: Complemental strand, 28671018 - 28670734
Alignment:
Q  13 agaatatggagtaacaaaagttccacgcatgttctatcacgaacaatctgatatcaacaatggtgcagccagtgaattaaatccaaagcttagtatccct 112  Q
    |||| ||||||||||||||||||||||||||||||||   ||||||||| |||||||  ||||| |||  | ||||| |||| ||||||||||| |||||    
T  28671018 agaaaatggagtaacaaaagttccacgcatgttctattgtgaacaatctaatatcaatcatggttcagtaaatgaatcaaattcaaagcttagtgtccct 28670919  T
Q  113 acaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcaagtgagaaatggggattctttcaagtaa 212  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||| || ||  |||||||||||||||||||||||||||||||||||    
T  28670918 acaattgacttaacaggaatccatgatgatcctgttttgagagatgaagttgtaagaaaagttcgaaatgcaagtgagaaatggggattctttcaagtaa 28670819  T
Q  213 taaatcatggaattccagttcatgttttggatgagatgatcaaaggaacttgtagatttcatcaacaggatcctaaggtgaggaa 297  Q
    |||||||||||||||||   ||  ||||||||||||||||||| ||||||||||||||||| ||||| ||| | |||||||||||    
T  28670818 taaatcatggaattccaacacagattttggatgagatgatcaatggaacttgtagatttcaccaacaagatgccaaggtgaggaa 28670734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 102 - 279
Target Start/End: Complemental strand, 28691549 - 28691372
Alignment:
Q  102 ttagtatccctacaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcaagtgagaaatggggatt 201  Q
    |||||||||||||||||||| ||| ||||||||||||||||| || |||||||||||||| ||||||| || ||||||||||| ||||||| ||||||||    
T  28691549 ttagtatccctacaattgacctaacaggaatccatgatgatcttgttttgagagatgaagctgtgagaaaagttgaaaatgcatgtgagaagtggggatt 28691450  T
Q  202 ctttcaagtaataaatcatggaattccagttcatgttttggatgagatgatcaaaggaacttgtagatttcatcaaca 279  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28691449 ctttcaagtaataaatcatggaatttcagctcatgttttggatgagatgatcaaaggaacttgtagatttcatcaaca 28691372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 13 - 297
Target Start/End: Complemental strand, 28675162 - 28674878
Alignment:
Q  13 agaatatggagtaacaaaagttccacgcatgttctatcacgaacaatctgatatcaacaatggtgcagccagtgaattaaatccaaagcttagtatccct 112  Q
    |||| |||| || |||||||||||||| |||||| ||   ||||||||| |||||||  ||    ||  |||||||| ||||  ||||||||| ||||||    
T  28675162 agaaaatggtgtcacaaaagttccacgtatgttccattgtgaacaatctaatatcaatgatctctcaatcagtgaatcaaatttaaagcttagcatccct 28675063  T
Q  113 acaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcaagtgagaaatggggattctttcaagtaa 212  Q
    ||||||||||||| ||||||||| |||||||||  |||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||| |    
T  28675062 acaattgacttaacaggaatccacgatgatcctcttttgagagatgaagttgtgagaaaagttcaaaatgcaagtgagaaatggggattctttcaagtga 28674963  T
Q  213 taaatcatggaattccagttcatgttttggatgagatgatcaaaggaacttgtagatttcatcaacaggatcctaaggtgaggaa 297  Q
    |||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||||| ||||| ||| | |||| ||||||    
T  28674962 taaatcatggaattccaacacatattttggatgagatgatcaaaggaacttgtagatttcaccaacaagatgccaaggcgaggaa 28674878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 91 - 299
Target Start/End: Complemental strand, 28696445 - 28696237
Alignment:
Q  91 aaatccaaagcttagtatccctacaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcaagtgag 190  Q
    |||| ||||||| ||||||||  |||||||| ||| |||||||||| |||||| || ||||| |||||||||||||||| || || ||||||||||||||    
T  28696445 aaattcaaagctaagtatcccaccaattgacctaacaggaatccataatgatcttgttttgaaagatgaagttgtgagaaaagttcaaaatgcaagtgag 28696346  T
Q  191 aaatggggattctttcaagtaataaatcatggaattccagttcatgttttggatgagatgatcaaaggaacttgtagatttcatcaacaggatcctaagg 290  Q
    || ||||||||||||||||||||||||||||||||||||   ||  ||||||||||||||||||||||||||||||||||||||||||| ||| | ||||    
T  28696345 aattggggattctttcaagtaataaatcatggaattccaacacaaattttggatgagatgatcaaaggaacttgtagatttcatcaacaagatgccaagg 28696246  T
Q  291 tgaggaaag 299  Q
    |||| ||||    
T  28696245 tgagaaaag 28696237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 203 - 279
Target Start/End: Complemental strand, 28717651 - 28717575
Alignment:
Q  203 tttcaagtaataaatcatggaattccagttcatgttttggatgagatgatcaaaggaacttgtagatttcatcaaca 279  Q
    |||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28717651 tttcaagtaataaatcatggaatttcaactcatgttttggatgagatgatcaaaggaacttgtagatttcatcaaca 28717575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 192
Target Start/End: Complemental strand, 28741621 - 28741514
Alignment:
Q  85 tgaattaaatccaaagcttagtatccctacaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgca 184  Q
    ||||| |||| ||||| ||||||||| || |||||| |||  ||||||||||||||||| || ||||||||||  |||||||||| || || ||||| ||    
T  28741621 tgaatgaaattcaaagattagtatccgtagaattgatttaccaggaatccatgatgatcttgttttgagagatacagttgtgagaaaagttcaaaattca 28741522  T
Q  185 agtgagaa 192  Q
     |||||||    
T  28741521 tgtgagaa 28741514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 146
Target Start/End: Complemental strand, 28733457 - 28733368
Alignment:
Q  57 aatctgatatcaacaatggtgcagccagtgaattaaatccaaagcttagtatccctacaattgacttaaaaggaatccatgatgatcctg 146  Q
    ||||| |||||||| ||| | ||| || ||||| |||| ||||| |||||||||||| |||||| |||  ||||||||||||||||||||    
T  28733457 aatctaatatcaacgatgtttcagtcaatgaataaaattcaaagattagtatccctagaattgatttaccaggaatccatgatgatcctg 28733368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 189 - 279
Target Start/End: Original strand, 41238469 - 41238559
Alignment:
Q  189 agaaatggggattctttcaagtaataaatcatggaattccagttcatgttttggatgagatgatcaaaggaacttgtagatttcatcaaca 279  Q
    |||| |||||||| || ||||| || |||||||| |||||| ||||||||||||||||||||||||| |||| ||||||||||||| ||||    
T  41238469 agaactggggatttttccaagtgatcaatcatggtattccacttcatgttttggatgagatgatcaatggaatttgtagatttcatgaaca 41238559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 33769169 - 33769111
Alignment:
Q  194 tggggattctttcaagtaataaatcatggaattccagttcatgttttggatgagatgat 252  Q
    |||||||| |||||||| || |||||||| ||||| |||  ||||||||||||||||||    
T  33769169 tggggattttttcaagtgattaatcatggtattccggttattgttttggatgagatgat 33769111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University