View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14221_low_8 (Length: 305)

Name: NF14221_low_8
Description: NF14221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14221_low_8
NF14221_low_8
[»] chr7 (1 HSPs)
chr7 (1-287)||(32223361-32223653)


Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 32223653 - 32223361
Alignment:
Q  1 gtggtggtgatggtggtggttagagaatgaccaaacaatgagtgacggatgtatattcaacaaagacgaaatttgttgcttcatttttctatacaggtgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32223653 gtggtggtgatggtggtggttagagaatgaccaaacaatgagtgacggatgtatattcaacaaagacgaaatttgttgcttcatttttctatacaggtgt 32223554  T
Q  101 tgctaaagttctgtaccttgcaccagaattcaatggcc-ttgttttaatttccatttctatttctactactagtggagctgtgaatcttgctttctttca 199  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32223553 tgctaaagttctgtaccttgcaccagaattcaatggcctttgttttaatttccatttctatttctactattagtggagctgtgaatcttgctttctttca 32223454  T
Q  200 tct-----tactacattaaccatatagtaataatttgaaattgaaagttgaaaactgggggagacctaaactagacaaattaaaacaggtaat 287  Q
    |||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32223453 tcttactatactacattaaccatatagtaataatttgaaattgaaagttgaaaactgggggagacctaaactagacaaattaaaacaggtaat 32223361  T

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