View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14222_high_1 (Length: 721)

Name: NF14222_high_1
Description: NF14222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14222_high_1
NF14222_high_1
[»] chr3 (19 HSPs)
chr3 (142-445)||(554477-554780)
chr3 (482-714)||(554817-555049)
chr3 (190-417)||(487897-488127)
chr3 (504-711)||(542908-543115)
chr3 (504-711)||(574871-575078)
chr3 (16-108)||(554351-554443)
chr3 (150-303)||(574612-574766)
chr3 (150-272)||(542235-542361)
chr3 (557-713)||(484206-484362)
chr3 (489-564)||(488194-488269)
chr3 (344-411)||(574770-574837)
chr3 (386-443)||(542809-542866)
chr3 (516-711)||(532565-532760)
chr3 (517-711)||(565149-565343)
chr3 (330-393)||(542724-542787)
chr3 (28-74)||(574165-574211)
chr3 (577-653)||(14961436-14961512)
chr3 (31-74)||(487447-487488)
chr3 (73-108)||(487784-487819)


Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 142 - 445
Target Start/End: Original strand, 554477 - 554780
Alignment:
Q  142 gaacatcggtgtgcctatgtctctaactgcaaaattgatacattacaattctactattaaattttaatcttagggttaaagattacaatttttgcttaaa 241  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  554477 gaacatcggtgtgcctatgtctctgactgcaaaattgatacattacaattctactattaaattttaatcttagggttaaagattacaatttttgtttaaa 554576  T
Q  242 tactatagccaatttacaatatttcccctaaaccataagggaccctaccaacttatcgttaaactatgatccatactcaacaaatgtaaagtgtaacaaa 341  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  554577 tactatagccaatttacaatatttcccctaaaccttaagggaccctaccaacttatcgttaaactatgatccatactcaacaaatgtaaagtgtaacaaa 554676  T
Q  342 cataatcctttaatcttacattcacttctctcaatacaataacgatggaccaatttattgacactttatatagctagataactaagtttatggtagatta 441  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  554677 cataatcccttaatcttacattcacttctctcaatacaataacgatggaccaatttattgacactttatatagctagataactaagtttatggtagatta 554776  T
Q  442 tagc 445  Q
    ||||    
T  554777 tagc 554780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 482 - 714
Target Start/End: Original strand, 554817 - 555049
Alignment:
Q  482 tttattgacacgtgtgaagtagaataatggtaggctactaaccagtgtccagctgaactgaagttgtgattcgatatttctttggcaagaaggcattgac 581  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  554817 tttatttacacgtgtgaagtagaataatggtaggctactaaccagtgtccagctgaactgaagttgtgattcgatatttctttggcaagaaggcattgac 554916  T
Q  582 tccaaaaattaaatctgtatgcccttgaaacagctcattcactcttgccgcgacaacacttatatcaattctcccaaccttaaaatccttaacaatttct 681  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  554917 tccaaaaattaaatctgtatgcccttgaaacagctcattcactcttgccgcgacaacacttatatcaattctccgaaacttaaaatccttaacaatttct 555016  T
Q  682 aaaaactcatcatacttttccctattcttatca 714  Q
    |||||||||||||||||||||||||||||||||    
T  555017 aaaaactcatcatacttttccctattcttatca 555049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 190 - 417
Target Start/End: Original strand, 487897 - 488127
Alignment:
Q  190 ttctactattaaattttaatcttagggttaaagattacaatttttgcttaaatactatagccaatttacaatatttcccctaaaccataagggaccctac 289  Q
    ||||| |||||||||| |||||| |||||||||||||||||||||| |||||||||||| |||||| |||| |||||||||||||| |||||||||||||    
T  487897 ttctattattaaatttcaatcttggggttaaagattacaatttttgtttaaatactatacccaattgacaagatttcccctaaaccttaagggaccctac 487996  T
Q  290 caacttatcgttaaactatgatccatactcaacaaatgtaaag---tgtaacaaacataatcctttaatcttacattcacttctctcaatacaataacga 386  Q
    ||||||||||||||||||||| |||||||||||||||| ||||   |||||||||| |||||| ||||||||||| || |||||||||||||||||||||    
T  487997 caacttatcgttaaactatgagccatactcaacaaatgcaaagtactgtaacaaacttaatcccttaatcttacactcgcttctctcaatacaataacga 488096  T
Q  387 tggaccaatttattgacactttatatagcta 417  Q
    |||||||||||||||||||||||||||||||    
T  488097 tggaccaatttattgacactttatatagcta 488127  T

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Target: chr3; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 504 - 711
Target Start/End: Original strand, 542908 - 543115
Alignment:
Q  504 aataatggtaggctactaaccagtgtccagctgaactgaagttgtgattcgatatttctttggcaagaaggcattgactccaaaaattaaatctgtatgc 603  Q
    |||||||||| |||||||||| ||||| |||||||||  || |||||||||||||||||||| |||||||||||||| ||| ||||||||||| ||||||    
T  542908 aataatggtatgctactaaccggtgtcaagctgaactagaggtgtgattcgatatttctttgccaagaaggcattgaatcccaaaattaaatcggtatgc 543007  T
Q  604 ccttgaaacagctcattcactcttgccgcgacaacacttatatcaattctcccaaccttaaaatccttaacaatttctaaaaactcatcatacttttccc 703  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||| ||||||||||     
T  543008 ccttgaaacagctcattccctcttgccgcggtaacacttatatcaattcttccaatcttgaaatccttaacaatttctaaaaactcatgatacttttcct 543107  T
Q  704 tattctta 711  Q
     |||||||    
T  543108 cattctta 543115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 504 - 711
Target Start/End: Original strand, 574871 - 575078
Alignment:
Q  504 aataatggtaggctactaaccagtgtccagctgaactgaagttgtgattcgatatttctttggcaagaaggcattgactccaaaaattaaatctgtatgc 603  Q
    ||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||| |||| ||| ||||||||||| ||||||    
T  574871 aataatggtaggctactaaccagtgtcaagctgaactggaggtgtgattcgatatttctttggcaagaaggcgttgaatcccaaaattaaatccgtatgc 574970  T
Q  604 ccttgaaacagctcattcactcttgccgcgacaacacttatatcaattctcccaaccttaaaatccttaacaatttctaaaaactcatcatacttttccc 703  Q
    ||||||| |||||||||| ||||||||||  ||||||||||||||||||| ||| |||| ||||||||| |||||| ||||||||||| ||||||||||     
T  574971 ccttgaagcagctcattccctcttgccgcagcaacacttatatcaattcttccagccttgaaatccttagcaatttttaaaaactcattatacttttcct 575070  T
Q  704 tattctta 711  Q
     |||||||    
T  575071 cattctta 575078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 554351 - 554443
Alignment:
Q  16 gaaaacatacaaatgaaaacgcaaactaaaaaacacacagagtggatgctttctattatctgtttgatgcatgaaaatatatcatcaacttgt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  554351 gaaaacatacaaatgaaaacgcaaactaaaaaacacacagagtggatgctttctattatctatttgatgcatgaaaatatatcatcaacttgt 554443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 150 - 303
Target Start/End: Original strand, 574612 - 574766
Alignment:
Q  150 gtgtgcctatgtctctaactgcaaaattgatacattacaattctactattaaattttaatcttagggttaaagattacaa-tttttgcttaaatactata 248  Q
    |||||||||||||||| |||||| ||||||| ||||||||||||| |||||||||| ||||||||| |||||| |||||| |||||  |||||||| |||    
T  574612 gtgtgcctatgtctctgactgcagaattgattcattacaattctattattaaatttcaatcttaggattaaaggttacaattttttttttaaatacaata 574711  T
Q  249 gccaatttacaatatttcccctaaaccataagggaccctaccaacttatcgttaa 303  Q
    |||||||||||| |||| ||||||||| | | |||||||||||||||||| ||||    
T  574712 gccaatttacaagatttgccctaaaccttgaaggaccctaccaacttatcattaa 574766  T

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Target: chr3; HSP #8
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 150 - 272
Target Start/End: Original strand, 542235 - 542361
Alignment:
Q  150 gtgtgcctatgtctctaactgcaaaattgatacattacaattctactattaaattttaatcttagggttaaagattacaatttttgctta----aatact 245  Q
    |||||||||||||||| |||||||||||||||| ||||||||||| |||||||||| | ||||||||||||||||||||||||||| |||    ||||||    
T  542235 gtgtgcctatgtctctgactgcaaaattgatactttacaattctattattaaatttcactcttagggttaaagattacaatttttgtttaaattaatact 542334  T
Q  246 atagccaatttacaatatttcccctaa 272  Q
    ||||| ||||||||| |||||||||||    
T  542335 atagcaaatttacaagatttcccctaa 542361  T

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Target: chr3; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 557 - 713
Target Start/End: Original strand, 484206 - 484362
Alignment:
Q  557 atttctttggcaagaaggcattga-ctccaaaaattaaatctgtatgcccttgaaacagctcattcactcttgccgcgacaacacttatatcaattctcc 655  Q
    ||||||||| ||||||| | |||| |||||||| |||||| | ||||||||||||||||||||||||||||||  ||||||||| || ||||||||        
T  484206 atttctttgtcaagaagtccttgaactccaaaa-ttaaatttttatgcccttgaaacagctcattcactcttgtagcgacaacatttctatcaattgctg 484304  T
Q  656 caaccttaaaatccttaacaatttctaaaaactcatcatacttttccctattcttatc 713  Q
    || ||   ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  484305 cagccaagaaatccttaacaatttctaaaaactcatcatacttttccctatccttatc 484362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 489 - 564
Target Start/End: Original strand, 488194 - 488269
Alignment:
Q  489 acacgtgtgaagtagaataatggtaggctactaaccagtgtccagctgaactgaagttgtgattcgatatttcttt 564  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  488194 acacatgtgaagtagaataatggtatgctactaaccagtgtccagctgaactgaaggtgtgattcgatatttcttt 488269  T

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Target: chr3; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 344 - 411
Target Start/End: Original strand, 574770 - 574837
Alignment:
Q  344 taatcctttaatcttacattcacttctctcaatacaataacgatggaccaatttattgacactttata 411  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  574770 taatcccttaatcttacactcacttctctcaatacaataacgatggaccaatttattgacactttata 574837  T

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Target: chr3; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 386 - 443
Target Start/End: Original strand, 542809 - 542866
Alignment:
Q  386 atggaccaatttattgacactttatatagctagataactaagtttatggtagattata 443  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  542809 atggaccaatttattgacactttatatagctagataactaagtttgtggtagattata 542866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 516 - 711
Target Start/End: Original strand, 532565 - 532760
Alignment:
Q  516 ctactaaccagtgtccagctgaact-gaagttgtgattcgatatttctttggcaagaaggcattgactccaaaaattaaatctgtatgcccttgaaacag 614  Q
    ||||||||||||||| ||||||  | ||||| ||| ||| |||| |||| |||||||||   |||| ||| |||||||||||||||||||||| |||||     
T  532565 ctactaaccagtgtcaagctgaggtcgaagt-gtgtttccatatgtcttaggcaagaagttgttgaatcccaaaattaaatctgtatgccctttaaacaa 532663  T
Q  615 ctcattcactcttgccgcgacaacacttatatcaattctcccaaccttaaaatccttaacaatttctaaaaactcatcatacttttccctattctta 711  Q
     || || |||||| |||||||| ||||| |||||||||| | | |||| |||||||| | || || |||||||||  |||||||||  |||||||||    
T  532664 atccttgactctttccgcgacaccacttgtatcaattctacaagccttgaaatccttcataagttttaaaaactcggcatacttttttctattctta 532760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 517 - 711
Target Start/End: Original strand, 565149 - 565343
Alignment:
Q  517 tactaaccagtgtccagctgaactgaagttgtgattcgatatttctttggcaagaaggcattgactccaaaaattaaatctgtatgcccttgaaacagct 616  Q
    |||||||||||||| ||||||  | ||  |||| ||| |||| |||| |||||||||   |||| ||| |||||||||||||||||||||| |||||       
T  565149 tactaaccagtgtcaagctgaggtcaaagtgtgtttccatatgtcttaggcaagaagatgttgaatcccaaaattaaatctgtatgccctttaaacaaac 565248  T
Q  617 cattcactcttgccgcgacaacacttatatcaattctcccaaccttaaaatccttaacaatttctaaaaactcatcatacttttccctattctta 711  Q
    | || |||||| |||||||| ||||| |||||||||| | | |||| |||||||| | || || |||||||||  |||||||||  |||||||||    
T  565249 ccttgactctttccgcgacaccacttgtatcaattctacaagccttgaaatccttcataagttttaaaaactcggcatacttttttctattctta 565343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 330 - 393
Target Start/End: Original strand, 542724 - 542787
Alignment:
Q  330 aagtgtaacaaacataatcctttaatcttacattcacttctctcaatacaataacgatggacca 393  Q
    ||||||| ||||| |||||| ||||||||| | |||||||||||||||||||||| ||||||||    
T  542724 aagtgtagcaaacttaatcccttaatcttatactcacttctctcaatacaataactatggacca 542787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 574165 - 574211
Alignment:
Q  28 atgaaaacgcaaactaaaaaacacacagagtggatgctttctattat 74  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||    
T  574165 atgaaaacacaaactaaaaaacacacagaatggatgctttctattat 574211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 577 - 653
Target Start/End: Complemental strand, 14961512 - 14961436
Alignment:
Q  577 ttgactccaaaaattaaatctgtatgcccttgaaacagctcattcactcttgccgcgacaacacttatatcaattct 653  Q
    |||| ||| ||||||| |||||||||||||| || |||||| || |||||||| |||||| | ||||||||||||||    
T  14961512 ttgaatcccaaaattagatctgtatgccctttaagcagctccttgactcttgcagcgacacctcttatatcaattct 14961436  T

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Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 487447 - 487488
Alignment:
Q  31 aaaacgcaaactaaaaaacacacagagtggatgctttctattat 74  Q
    |||||||||||||||||||||||  |||||||||||||||||||    
T  487447 aaaacgcaaactaaaaaacacac--agtggatgctttctattat 487488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 108
Target Start/End: Original strand, 487784 - 487819
Alignment:
Q  73 atctgtttgatgcatgaaaatatatcatcaacttgt 108  Q
    ||||||||||| ||||||||||||||||||||||||    
T  487784 atctgtttgatacatgaaaatatatcatcaacttgt 487819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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