View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14222_high_11 (Length: 414)
Name: NF14222_high_11
Description: NF14222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14222_high_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 408
Target Start/End: Complemental strand, 9298985 - 9298596
Alignment:
| Q |
18 |
ataatttaatatatagagcaagagagggataaagtagacagaagatgatataaagaaacataattgtatctatctctatgctattaagaatgaaaataat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9298985 |
ataatttaatatatagagcaagagagggataaagtagaaagaagatgatataaagaaacataattgtatctatctctatgctattaaaaatgaaaataat |
9298886 |
T |
|
| Q |
118 |
atgctgcnnnnnnnnnntattgattaagaatcggtcaaagtccaagaatatgatgtgcattgcaagctccctattcaagtacatgataaataatgctaag |
217 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9298885 |
atgctgcaaaaaaaaa-tatagattaagaatcggtcaaagtccaagaatatgatgtgcattgcaagctccctattcaagtacatgataaataatgctaag |
9298787 |
T |
|
| Q |
218 |
aaacacattgatcttcaagtacatgtttcaacaaaatgtttttgatcgattaaaattcacactgagtcctccaaatttacgagacccacataatcaattc |
317 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| | ||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
9298786 |
aaacacattgatctacaagtacatgtttcaacaaaatgtttttgattgattaaaattcatagtgaatcctccaaatttacgatacccacataatcaattc |
9298687 |
T |
|
| Q |
318 |
aaaagagttttgaaaaatatgtattaaaaattatgttgccatcacttaattttaatatcaacacctttttctctcgcttctcttcatctca |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9298686 |
aaaagagttttgaaaaatatgtattaaaaattatgttgccatcatttaattttaatatcaacacctttttctctcgcttctcttcttctca |
9298596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University