View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14222_high_16 (Length: 281)
Name: NF14222_high_16
Description: NF14222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14222_high_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 2786987 - 2786726
Alignment:
| Q |
1 |
accccagcaaaatagaatataaacataacctaacaaagtgaagaaaatgatttgcaagagaaaaattagagagttgcaagcagagagttaaacaagagat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2786987 |
accccagcaaaatagaatataaacataacctaacaaagtgaaggaaatgatttgcaagagaaaaattagagagttgcaaacagagagttaaacaagagat |
2786888 |
T |
|
| Q |
101 |
ttgctttgaaaatcacttttttgcatgtcaggaaatgctaagggggcttcattgtgtacaatatcacataactcgaaatgaggctccatttaccctaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2786887 |
ttgctttgaaaatcacttttttgcatgtcaggaaatgctaagggggcttcattgtgtacaatatcacataactccaaatgaggctccatttaccctaaac |
2786788 |
T |
|
| Q |
201 |
atcttgtagaaggaaacaccatctacaaattcattgaagagacaaacaatagaactaggcaa |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2786787 |
atcttgtagaaggaaacaccatctacaaattcattgaagagacaaacaatagaactaggcaa |
2786726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 27743576 - 27743312
Alignment:
| Q |
1 |
accccagcaaaatagaatataaacataacctaacaaagtgaagaaaatgatttgcaagagaaaaattagagagttgcaagcagagagttaaac-aagaga |
99 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| || ||||| |||||| |
|
|
| T |
27743576 |
acccaagcaaaatagaataaaaacataacctaacaaagtgaagaaaatgatttgcaagagaaaaattagagagtttcaaacagggaactaaaccaagaga |
27743477 |
T |
|
| Q |
100 |
tttgctttgaaaatcacttttttgcatgtcaggaaatgctaagggggcttcattgtgtacaatatcacataactcgaaatga--ggctccatttacccta |
197 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| | |||||||||| ||||| |
|
|
| T |
27743476 |
ttttctttgaaaatcactcttttgcatgtcaggaaatgctaagggggcttcattgtgaacaatatcacataactccaaatcataggctccatttccccta |
27743377 |
T |
|
| Q |
198 |
aacatcttgtagaaggaaacaccatctacaaattcattgaagagacaaacaatagaactaggcaa |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27743376 |
aacatcttgtagaaggaaacaccatctacaaattcattgaagagacaaacaatagaactaggcaa |
27743312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 11463224 - 11463280
Alignment:
| Q |
195 |
ctaaacatcttgtagaaggaaacaccatctacaaattcattgaagagacaaacaata |
251 |
Q |
| |
|
||||||||||| | || ||||||| |||| |||||||| ||||||| |||||||||| |
|
|
| T |
11463224 |
ctaaacatcttattgatggaaacaacatccacaaattccttgaagaaacaaacaata |
11463280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University