View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14222_high_2 (Length: 676)
Name: NF14222_high_2
Description: NF14222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14222_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 531; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 20 - 662
Target Start/End: Original strand, 25613367 - 25614009
Alignment:
| Q |
20 |
ctttctcaacagtggacccacctctgcgattcagtcacttctctccgctctgacgaccaggaaactgtgcgagactgcagccacttcaatagcttctgtc |
119 |
Q |
| |
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|||||| |||| |||||||| ||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25613367 |
ctttctaaacaatggacccaactctgcggttcactcacttctctccgctctgacgacgaggaaactgtgcgagactgcagccacttcaatagcttctgtc |
25613466 |
T |
|
| Q |
120 |
gcatggtgaatgcattcatgctctctcctcgagaacaaaaccatcccatcaaaacgttttacataaattgtcgctttggattttgtaagaatggtagccg |
219 |
Q |
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| |||||||||||| |||||||||||||||| |||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25613467 |
gtatggtgaatgcagtcatgctctctcctcgggaaccaaatcatcccatcaaaacgttttacataaactgtcgctttggattttgtaagaatggtagccg |
25613566 |
T |
|
| Q |
220 |
cattttctctgcatgggtagaagccgcaaaacaacgcagtgttgtggaatttcatctctccagtagtatcaccttgaagttgaatcctacaattttcacg |
319 |
Q |
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|||||||||||||||||||||||| ||||| || || ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25613567 |
cattttctctgcatgggtagaagctgcaaatcagcgtagtgttgaggaatttcatctctccaatagtatcaccttgaagttgaatcctacaattttcacc |
25613666 |
T |
|
| Q |
320 |
tcgaaaaccctagttgttttgaaacttgagagattagtagttaaagctgaaaatttatgtgttgatcttccatctctcaaaatcctacctttgaaagaaa |
419 |
Q |
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|| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25613667 |
tccaaaaccctagttgttctgaaacttgagagattagtagttaaagctgaaaatttgtgtgttgatcttccatctctcaaaatcctatctttgaaagaaa |
25613766 |
T |
|
| Q |
420 |
tctgttttacatacaataaagatatcatgaaacttcttaatggttgtccagttctagaagatttacatactttttgtcgtgaatatacgagatttgtaga |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25613767 |
tctgttttacatacaataaagatatcatgaaacttcttaatggttgtccagttctagaagatttacatacttttggtcgtgaatatacgagatttgtaga |
25613866 |
T |
|
| Q |
520 |
agacaatgcagcggaagggtttaaacccttgtccaagttggtcagagcagatatcagtttatatgatgttccctttcatgcaattaaaaatgttgagttt |
619 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25613867 |
agacaatgcagcggaagggtttaaacccttgtccaagttggtcagagcagatatcagttcatatgatgttccctttcatgcaattaaaaatgttgagttt |
25613966 |
T |
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| Q |
620 |
cttagcatagacgaggcaccagaaaatattttcaaaaccatcc |
662 |
Q |
| |
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||||||||| | | ||||||||||||||||||||||||||||| |
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| T |
25613967 |
cttagcatacatgtggcaccagaaaatattttcaaaaccatcc |
25614009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 229 - 660
Target Start/End: Original strand, 31261730 - 31262149
Alignment:
| Q |
229 |
tgcatgggtagaagccgcaaaacaacgcagtgttgtggaatttcatctctcca------gtagtatcaccttgaagttgaatcctacaattttcacgtcg |
322 |
Q |
| |
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|||||||||||||||||| ||||| ||| | |||| ||||||| ||||||||| || |||||||||||| |||||||| |||||||| || || |
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| T |
31261730 |
tgcatgggtagaagccgctaaacagcgccgagttgaggaatttaatctctccatcatcagtggtatcaccttgatattgaatcccacaattttaacctcc |
31261829 |
T |
|
| Q |
323 |
aaaaccctagttgttttgaaacttgagagattagtagttaaagctgaaaatttatgtgttgatcttccatctctcaaaatcctacctttgaaagaaatct |
422 |
Q |
| |
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||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
31261830 |
caaaccctagttattctgaaacttgagagattagtagttaaagctgaaaatttgtgtgttgatcttccatctctcaaaatcctacatttggtagaaatct |
31261929 |
T |
|
| Q |
423 |
gttttacatacaataaagatatcatgaaacttcttaatggttgtccagttctagaagatttacatactttttgtcgtgaatatacgagatttgtagaaga |
522 |
Q |
| |
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| T |
31261930 |
gttttaaatacaagaatgatttcatgaaacttcttaatggatgtcctgttctagaagatttac------------------acacgagagttgaagaaaa |
31262011 |
T |
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| Q |
523 |
caatgcagcggaagggtttaaacccttgtccaagttggtcagagcagatatcagtttatatgatgttccctttcatgcaattaaaaatgttgagtttctt |
622 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||| ||| ||||||||||| |
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| T |
31262012 |
taatgcagcggaagggtttaaacccttgtccaagttggtcagagcagatatcaattcatatgatgttccctttgatgcaattaataatcttgagtttctt |
31262111 |
T |
|
| Q |
623 |
agcatagacgaggcaccagaaaatattttcaaaaccat |
660 |
Q |
| |
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||||| | |||||||||||||| |||||||||||| |
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| T |
31262112 |
tgcataagagtggcaccagaaaatactttcaaaaccat |
31262149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 323 - 401
Target Start/End: Complemental strand, 23940856 - 23940778
Alignment:
| Q |
323 |
aaaaccctagttgttttgaaacttgagagattagtagttaaagctgaaaatttatgtgttgatcttccatctctcaaaa |
401 |
Q |
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| T |
23940856 |
aaaaccctagttgatctcaaacttgagagattaaaagttgaaactgataatttgtgtgttgatcttccatctctcaaaa |
23940778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 311 - 407
Target Start/End: Complemental strand, 24005697 - 24005601
Alignment:
| Q |
311 |
attttcacgtcgaaaaccctagttgttttgaaacttgagagattagtagttaaagctgaaaatttatgtgttgatcttccatctctcaaaatcctac |
407 |
Q |
| |
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|||||||| || | ||||||||||||| | ||||||| ||| ||| |||| ||| ||||||||| ||||||||||||||| |||||||| ||||| |
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| T |
24005697 |
attttcacctccagaaccctagttgttgtcaaacttgcgagcttaaaagttgaaggtgaaaatttgtgtgttgatcttccaaatctcaaaaccctac |
24005601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 379 - 415
Target Start/End: Original strand, 24112215 - 24112251
Alignment:
| Q |
379 |
tgttgatcttccatctctcaaaatcctacctttgaaa |
415 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||| |
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| T |
24112215 |
tgttgatcttccatctctcaaaatcctaggtttgaaa |
24112251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 299 - 401
Target Start/End: Original strand, 15498038 - 15498140
Alignment:
| Q |
299 |
ttgaatcctacaattttcacgtcgaaaaccctagttgttttgaaacttgagagattagtagttaaagctgaaaatttatgtgttgatcttccatctctca |
398 |
Q |
| |
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|||||||| ||||||||||| || | |||||||||||| | |||| || ||| ||| | || ||||||||||||| |||||| ||||||||||||||| |
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| T |
15498038 |
ttgaatcccacaattttcacctctcataccctagttgttctcaaacatgcgaggttacaacttgaagctgaaaatttgtgtgttcatcttccatctctca |
15498137 |
T |
|
| Q |
399 |
aaa |
401 |
Q |
| |
|
||| |
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|
| T |
15498138 |
aaa |
15498140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 28720838 - 28720789
Alignment:
| Q |
299 |
ttgaatcctacaattttcacgtcgaaaaccctagttgttttgaaacttga |
348 |
Q |
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|||||||| |||||||||| || ||||||||||||||||||||||||| |
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| T |
28720838 |
ttgaatcccgcaattttcacctctcaaaccctagttgttttgaaacttga |
28720789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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