View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14222_high_21 (Length: 229)

Name: NF14222_high_21
Description: NF14222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14222_high_21
NF14222_high_21
[»] chr5 (1 HSPs)
chr5 (1-229)||(36210712-36210940)
[»] chr2 (15 HSPs)
chr2 (153-229)||(31372189-31372265)
chr2 (165-229)||(31251906-31251970)
chr2 (165-229)||(31279399-31279463)
chr2 (165-229)||(31303411-31303475)
chr2 (165-229)||(31382639-31382703)
chr2 (165-225)||(31289596-31289656)
chr2 (165-223)||(31230496-31230554)
chr2 (165-223)||(31242938-31242996)
chr2 (1-51)||(31251731-31251781)
chr2 (1-51)||(31303238-31303288)
chr2 (183-229)||(31354178-31354224)
chr2 (1-51)||(31382512-31382562)
chr2 (1-46)||(31353984-31354029)
chr2 (165-229)||(31197032-31197096)
chr2 (165-229)||(31215644-31215708)


Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 36210712 - 36210940
Alignment:
Q  1 tcccttgctttgatttagagggaagtagcttaactgctatcaatgttccatcttatagacgtccctgtattttcgaagaatgttgtatatatgaacactc 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36210712 tcccttgctttgatttagaggaaagtagcttaactgctatcaatgttccatctgatagacgtccctgtattttcgaagaatgttgtatatatgaacactc 36210811  T
Q  101 gctaaataatgcttaacattataataaatatgtgacaactaatataatttagtatattaaacataataccttatatactggaccaaatcctccttcacca 200  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36210812 gctaaataatacttaacattataataaatatgtgataactaatataatttagtatattaaacataataccttgtatactggaccaaatcctccttcacca 36210911  T
Q  201 atctcattggaaatatcaaagttatttgt 229  Q
    |||| ||| |||||||| |||||||||||    
T  36210912 atcttattagaaatatcgaagttatttgt 36210940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 31372189 - 31372265
Alignment:
Q  153 tatattaaacataataccttatatactggaccaaatcctccttcaccaatctcattggaaatatcaaagttatttgt 229  Q
    ||||||| ||| |||||||| || || ||||||||||| ||||| ||||||| ||||||||||||||||||||||||    
T  31372189 tatattatacaaaataccttgtacacgggaccaaatccaccttcgccaatcttattggaaatatcaaagttatttgt 31372265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 31251906 - 31251970
Alignment:
Q  165 aataccttatatactggaccaaatcctccttcaccaatctcattggaaatatcaaagttatttgt 229  Q
    |||||||| || || ||||| ||||||||||| ||||||| ||||||||||||||||||||||||    
T  31251906 aataccttgtacacaggaccgaatcctccttccccaatcttattggaaatatcaaagttatttgt 31251970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 31279399 - 31279463
Alignment:
Q  165 aataccttatatactggaccaaatcctccttcaccaatctcattggaaatatcaaagttatttgt 229  Q
    |||||||| || || ||||||||||| ||||| ||||||| ||||||||||||||||||||||||    
T  31279399 aataccttgtacacgggaccaaatccaccttcgccaatcttattggaaatatcaaagttatttgt 31279463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 31303411 - 31303475
Alignment:
Q  165 aataccttatatactggaccaaatcctccttcaccaatctcattggaaatatcaaagttatttgt 229  Q
    |||||||| || || || |||||||||||||||||||||| |||||||||||| |||||||||||    
T  31303411 aataccttgtacacggggccaaatcctccttcaccaatcttattggaaatatcgaagttatttgt 31303475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 31382639 - 31382703
Alignment:
Q  165 aataccttatatactggaccaaatcctccttcaccaatctcattggaaatatcaaagttatttgt 229  Q
    |||||||| || || ||||||||||||||||| ||||||| |||||||||||| |||||||||||    
T  31382639 aataccttgtacacaggaccaaatcctccttctccaatcttattggaaatatcgaagttatttgt 31382703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 31289596 - 31289656
Alignment:
Q  165 aataccttatatactggaccaaatcctccttcaccaatctcattggaaatatcaaagttat 225  Q
    |||||||| || || ||||||||||||||||| ||||||| |||||||| ||| |||||||    
T  31289596 aataccttgtacacaggaccaaatcctccttctccaatcttattggaaacatcgaagttat 31289656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 31230496 - 31230554
Alignment:
Q  165 aataccttatatactggaccaaatcctccttcaccaatctcattggaaatatcaaagtt 223  Q
    |||||||| || || |||||||| |||||||||||||||| || || ||||||||||||    
T  31230496 aataccttgtaaacaggaccaaaccctccttcaccaatcttataggcaatatcaaagtt 31230554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 31242938 - 31242996
Alignment:
Q  165 aataccttatatactggaccaaatcctccttcaccaatctcattggaaatatcaaagtt 223  Q
    |||||||| || || ||||||||||||||||| ||||||| || || ||||||||||||    
T  31242938 aataccttgtacacaggaccaaatcctccttctccaatcttataggcaatatcaaagtt 31242996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 31251731 - 31251781
Alignment:
Q  1 tcccttgctttgatttagagggaagtagcttaactgctatcaatgttccat 51  Q
    ||||||||||||||||||| | |||| |||| |||||||||||||| ||||    
T  31251731 tcccttgctttgatttagaagaaagttgcttcactgctatcaatgtcccat 31251781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 31303238 - 31303288
Alignment:
Q  1 tcccttgctttgatttagagggaagtagcttaactgctatcaatgttccat 51  Q
    ||||||||||||||||||| | |||| |||| ||||||| |||||||||||    
T  31303238 tcccttgctttgatttagaagaaagttgcttcactgctaccaatgttccat 31303288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 31354178 - 31354224
Alignment:
Q  183 ccaaatcctccttcaccaatctcattggaaatatcaaagttatttgt 229  Q
    |||||||| ||||| |||||||  |||||||||||||||||||||||    
T  31354178 ccaaatcccccttctccaatcttgttggaaatatcaaagttatttgt 31354224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 31382512 - 31382562
Alignment:
Q  1 tcccttgctttgatttagagggaagtagcttaactgctatcaatgttccat 51  Q
    ||||||||||||||||||| | |||| |||| |||||||||||||| ||||    
T  31382512 tcccttgctttgatttagaagaaagttgcttcactgctatcaatgtcccat 31382562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 31353984 - 31354029
Alignment:
Q  1 tcccttgctttgatttagagggaagtagcttaactgctatcaatgt 46  Q
    ||||||||||||||||||| | |||| |||| ||||||||||||||    
T  31353984 tcccttgctttgatttagaagaaagttgcttcactgctatcaatgt 31354029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 31197032 - 31197096
Alignment:
Q  165 aataccttatatactggaccaaatcctccttcaccaatctcattggaaatatcaaagttatttgt 229  Q
    |||||||| || || |||||||| |||||||| ||||||| || || |||||||||||| |||||    
T  31197032 aataccttgtaaacaggaccaaaccctccttctccaatcttataggcaatatcaaagttgtttgt 31197096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 31215644 - 31215708
Alignment:
Q  165 aataccttatatactggaccaaatcctccttcaccaatctcattggaaatatcaaagttatttgt 229  Q
    |||||||| || || |||||||| |||||||| ||||||| || || |||||||||||| |||||    
T  31215644 aataccttgtaaacaggaccaaaccctccttctccaatcttataggcaatatcaaagttgtttgt 31215708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University