View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14222_high_5 (Length: 463)
Name: NF14222_high_5
Description: NF14222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14222_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 52483981 - 52483532
Alignment:
| Q |
1 |
cacattacgttcaacccgagtctgagtctgactcaactaagcctcaactcgttagaaaaccgtctcttttacaacgagtcatgtccttcaatctcaacaa |
100 |
Q |
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| T |
52483981 |
cacattacgttcaacccgagtctgagtctgactcaactaagcctcaactcgttagaaaaccgtctcttttacaacgagtcatgtccttcaatctcaacaa |
52483882 |
T |
|
| Q |
101 |
aaacgaaccagcaccaccagaagctgaaaaccaatctctgaactaggtaaagagcaaggtggagatgaagaaatcagcgagcgagaaaacgtttgaacgg |
200 |
Q |
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| T |
52483881 |
aaacgtaccagcacaaccggaagctgaaaacccatctctgaaccaggtaaagagcaaggtggagatgaagaaatcagcgagcgagaaaacgtttgaacgg |
52483782 |
T |
|
| Q |
201 |
ggggaagaagatgaagaagcggtggagagaagaaggccagcgacggcggcggcgaggagtgaaacgacgacgtgtaaagaagatgaagctgttgatgcaa |
300 |
Q |
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| T |
52483781 |
ggggaagaagatgaagaaacggtggagagaagaaggccagcgacggcagcggcgaggagtgaaacgacaacgtgtaaagaagatgaagctgttgatgcaa |
52483682 |
T |
|
| Q |
301 |
aagctgatgatttcattaacaggtttaagaagcaactccggttgcagaggcgtgattcttttatgcgttacagaaacactgccagatgaggaatttcttg |
400 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
52483681 |
aagctgatgatttcataaacaggtttaagaagcaactccggttgcagaggcttgattcttttatgcgttacagaaacacagccagatgaggaatttcttg |
52483582 |
T |
|
| Q |
401 |
acaacagtaacaaactctttgaaaaaacacagccatataataatgtattt |
450 |
Q |
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| T |
52483581 |
acaacagaaacaaactctttgaaaaaacacagccatataataatgtattt |
52483532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 277 - 378
Target Start/End: Complemental strand, 52464547 - 52464446
Alignment:
| Q |
277 |
aagaagatgaagctgttgatgcaaaagctgatgatttcattaacaggtttaagaagcaactccggttgcagaggcgtgattcttttatgcgttacagaaa |
376 |
Q |
| |
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||||||||||||| | ||||||||||||||||||||| || |||| ||||||||||||| | |||||||||||| | |||||||||| |||| || ||| |
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| T |
52464547 |
aagaagatgaagcggatgatgcaaaagctgatgattttataaacatgtttaagaagcaattgaggttgcagaggcttaattcttttatccgttccaaaaa |
52464448 |
T |
|
| Q |
377 |
ca |
378 |
Q |
| |
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|| |
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| T |
52464447 |
ca |
52464446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 52484063 - 52483995
Alignment:
| Q |
42 |
cctcaactcgttagaaaaccgtctcttttacaacgagtcatgtccttcaatctcaacaaaaacgaacca |
110 |
Q |
| |
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| T |
52484063 |
cctcaactcgttcgaaaaccttctttgttagagagagttatgtccttcaatctcaacaaacacgaacca |
52483995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 52464762 - 52464704
Alignment:
| Q |
56 |
aaaaccgtctcttttacaacgagtcatgtccttcaatctcaacaaaaacgaaccagcac |
114 |
Q |
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|||||| || || ||||| |||||| |||| ||||||||||||||| |||||||||||| |
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|
| T |
52464762 |
aaaaccttcactgttacagcgagtcttgtctttcaatctcaacaaacacgaaccagcac |
52464704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 359
Target Start/End: Original strand, 17236292 - 17236373
Alignment:
| Q |
278 |
agaagatgaagctgttgatgcaaaagctgatgatttcattaacaggtttaagaagcaactccggttgcagaggcgtgattct |
359 |
Q |
| |
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|||||| |||| ||||||||||| ||||||||||| || || ||||||||| ||||||| ||||| | |||| ||||||| |
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| T |
17236292 |
agaagaggaagaagttgatgcaaaggctgatgattttataaagaggtttaagcagcaacttaggttggaaaggcttgattct |
17236373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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