View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14222_high_9 (Length: 421)
Name: NF14222_high_9
Description: NF14222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14222_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 13137594 - 13137999
Alignment:
| Q |
1 |
tttcctctactacggtatatttttgctgcagaagaaagaccagcaaagttggtaacataatagtgtgccatagtcaccatgtaagcattggcatggtttt |
100 |
Q |
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| T |
13137594 |
tttcctctactacggtatatttttgctgcagaagaaagaccagcaaagttggtaacataatagtgtgccatagtcaccatgtaagcattggcatggtttt |
13137693 |
T |
|
| Q |
101 |
tctttttcttcatttgtagaacnnnnnnnttgtcagtgtatgaattatcatatgaaacaatagtggtctctataatgtaatcttgtttaacacttataca |
200 |
Q |
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| T |
13137694 |
tctttttcttcatttgtagaacaaaaaaattgtcagtgtatgaattatcatatgaaacaatagtggtctctataatgtaatcttgtttaacacttataca |
13137793 |
T |
|
| Q |
201 |
agatttgtatacccccgaatttgcaataccctctatccctccatgaagataatcactcccaacccttttgatatccaaagaaaaagcagatgtgatatct |
300 |
Q |
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| T |
13137794 |
agatttgtatacccccgaatttgcaataccctctatccctccatgaagataatcactcccaacccttttgatatccaaagtaaaagcagatgtgatatct |
13137893 |
T |
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| Q |
301 |
gcatcgtcgttgcttaatccaaaatatatactctcaacaccattgttgtcgtgtctcgcttccagttgaaaacaacaaccatgctctaatttcttaccta |
400 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13137894 |
gcatcgtcgtcccttaatccaaaatatatactctcaacaccattgttgtcgtgtctcgcttccagttgaaaacaacaaccatgctctaatttcttaccta |
13137993 |
T |
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| Q |
401 |
ctttgt |
406 |
Q |
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|||||| |
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| T |
13137994 |
ctttgt |
13137999 |
T |
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