View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14222_low_11 (Length: 417)
Name: NF14222_low_11
Description: NF14222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14222_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 12 - 399
Target Start/End: Original strand, 31883477 - 31883863
Alignment:
| Q |
12 |
aaaggtctagttcgaggaaaactttttatttttgggtaaaacaatttcaaaggtatatgtgccgaggatgtgtatcatgtcaatgaattttcctgttttt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
31883477 |
aaaggtctagttcgaggaaaactttttatttttgggtaaaacaatttcaaaggtatatgtgccgaggatgtgtatcatgtcaatgaatttccttgttttt |
31883576 |
T |
|
| Q |
112 |
atgttctttgcaagaaatattttgctagtgcaatgtttcgctcgcaaggtgttgaagtgtgaactgtgtaagatgagactatgattatttgtcacatccc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31883577 |
atgttctttgcaagaaatattttgctagtgcaatgtttcgctcgcaaggtgttgaagtgtgagctgtgtaagatgagactatgattatttgtcacatccc |
31883676 |
T |
|
| Q |
212 |
tcatttaagatgtatttgatccttattacgaggaagagattgagtgaacatgacctttgatccccttccaccacgtgttagggctacttctttgcacttg |
311 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31883677 |
tcatttaagatgtatttgatccttactacgaggaagagattgagtgaacatgacctttgatccccttccaccacgtgttagggctacttctttgcacttg |
31883776 |
T |
|
| Q |
312 |
atggcctagacttttcgagtgctttcctgtgttagtactgaggaagattcgtcgcaattggattgatcatgatgcttggggttttgtt |
399 |
Q |
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||||||||||| |||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31883777 |
atggcctagac-tttctagtgctttcttgtgttggtactgaggaagattcgtcgcaattggattgatcatgatgcttggggttttgtt |
31883863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 323
Target Start/End: Original strand, 23972109 - 23972143
Alignment:
| Q |
289 |
ttagggctacttctttgcacttgatggcctagact |
323 |
Q |
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||||||||||||| ||||||||||||||||||||| |
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| T |
23972109 |
ttagggctacttcattgcacttgatggcctagact |
23972143 |
T |
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