View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14222_low_13 (Length: 396)

Name: NF14222_low_13
Description: NF14222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14222_low_13
NF14222_low_13
[»] chr3 (30 HSPs)
chr3 (11-150)||(46690204-46690343)
chr3 (10-137)||(39531740-39531866)
chr3 (11-147)||(46688474-46688608)
chr3 (262-330)||(46689483-46689551)
chr3 (10-138)||(50765697-50765824)
chr3 (10-137)||(45730703-45730829)
chr3 (11-137)||(53901636-53901761)
chr3 (10-137)||(33000724-33000850)
chr3 (10-133)||(2088908-2089030)
chr3 (10-137)||(39530861-39530987)
chr3 (11-133)||(32999864-32999985)
chr3 (11-137)||(53902560-53902684)
chr3 (10-73)||(50150787-50150850)
chr3 (11-137)||(4067993-4068118)
chr3 (21-149)||(50003134-50003261)
chr3 (11-138)||(5409405-5409532)
chr3 (10-73)||(27226525-27226589)
chr3 (111-149)||(8895323-8895361)
chr3 (18-137)||(1032787-1032905)
chr3 (19-68)||(21248248-21248297)
chr3 (341-382)||(46688911-46688952)
chr3 (89-149)||(14206692-14206752)
chr3 (89-149)||(14214440-14214500)
chr3 (21-142)||(27225511-27225631)
chr3 (10-68)||(5384487-5384546)
chr3 (21-68)||(5411230-5411277)
chr3 (83-144)||(10979088-10979149)
chr3 (19-68)||(21247312-21247361)
chr3 (83-143)||(44115576-44115636)
chr3 (83-143)||(48336486-48336546)
[»] chr8 (20 HSPs)
chr8 (11-151)||(12820008-12820147)
chr8 (10-137)||(9190366-9190492)
chr8 (10-151)||(12818820-12818960)
chr8 (10-133)||(4534100-4534222)
chr8 (10-137)||(9189460-9189586)
chr8 (10-137)||(16346165-16346291)
chr8 (10-137)||(4534953-4535079)
chr8 (10-137)||(22914114-22914240)
chr8 (10-133)||(22913258-22913380)
chr8 (10-137)||(23767943-23768069)
chr8 (14-133)||(23768413-23768531)
chr8 (21-142)||(44769757-44769876)
chr8 (83-149)||(11080943-11081009)
chr8 (89-149)||(35462900-35462960)
chr8 (11-66)||(11868029-11868084)
chr8 (25-142)||(44770532-44770648)
chr8 (21-68)||(41766200-41766247)
chr8 (19-68)||(41767155-41767204)
chr8 (81-142)||(43414710-43414771)
chr8 (21-73)||(43415954-43416006)
[»] chr6 (17 HSPs)
chr6 (10-135)||(1757420-1757544)
chr6 (10-137)||(14174169-14174295)
chr6 (10-137)||(14178705-14178831)
chr6 (10-137)||(11724220-11724346)
chr6 (10-133)||(27107247-27107369)
chr6 (10-133)||(27149053-27149175)
chr6 (11-137)||(1692905-1693030)
chr6 (11-137)||(27108098-27108223)
chr6 (11-137)||(27149895-27150020)
chr6 (10-137)||(1692140-1692265)
chr6 (10-142)||(10673675-10673807)
chr6 (21-142)||(13561356-13561476)
chr6 (21-142)||(13562214-13562334)
chr6 (10-68)||(25437849-25437907)
chr6 (83-146)||(18230475-18230538)
chr6 (83-149)||(682404-682470)
chr6 (11-64)||(24318059-24318113)
[»] chr1 (12 HSPs)
chr1 (10-138)||(9822717-9822844)
chr1 (10-137)||(30743153-30743279)
chr1 (10-137)||(43808445-43808571)
chr1 (10-133)||(21246403-21246525)
chr1 (10-133)||(43807501-43807623)
chr1 (83-148)||(45042748-45042813)
chr1 (21-71)||(9850047-9850097)
chr1 (83-149)||(49619729-49619795)
chr1 (89-149)||(52439196-52439256)
chr1 (83-149)||(49618570-49618636)
chr1 (83-143)||(51088675-51088735)
chr1 (114-146)||(51694414-51694446)
[»] chr4 (28 HSPs)
chr4 (10-137)||(47243914-47244040)
chr4 (11-137)||(5418153-5418278)
chr4 (11-137)||(47573568-47573693)
chr4 (10-137)||(47572652-47572778)
chr4 (11-137)||(50497062-50497187)
chr4 (10-137)||(50497896-50498022)
chr4 (10-137)||(43709798-43709924)
chr4 (11-134)||(47243019-47243141)
chr4 (12-137)||(26059709-26059833)
chr4 (10-133)||(5417370-5417492)
chr4 (10-73)||(26045198-26045261)
chr4 (10-73)||(43708902-43708965)
chr4 (21-139)||(21570344-21570461)
chr4 (21-142)||(31204632-31204752)
chr4 (10-73)||(11482862-11482926)
chr4 (83-143)||(37642457-37642517)
chr4 (81-137)||(48413487-48413543)
chr4 (111-146)||(20944443-20944478)
chr4 (21-140)||(42713541-42713658)
chr4 (21-68)||(44219019-44219066)
chr4 (21-71)||(54822456-54822506)
chr4 (21-71)||(54823246-54823296)
chr4 (81-149)||(17521951-17522019)
chr4 (111-146)||(20945391-20945426)
chr4 (21-138)||(21569328-21569444)
chr4 (83-149)||(49923676-49923742)
chr4 (83-143)||(54372885-54372945)
chr4 (83-143)||(54373869-54373929)
[»] chr2 (12 HSPs)
chr2 (10-137)||(20630595-20630721)
chr2 (11-137)||(30179476-30179601)
chr2 (10-130)||(33553296-33553415)
chr2 (13-133)||(30178614-30178733)
chr2 (11-135)||(39272136-39272259)
chr2 (21-139)||(370845-370962)
chr2 (21-140)||(10330784-10330901)
chr2 (84-145)||(12364330-12364391)
chr2 (24-68)||(38593112-38593156)
chr2 (24-68)||(38596708-38596752)
chr2 (21-138)||(371889-372005)
chr2 (89-139)||(20921656-20921706)
[»] chr7 (27 HSPs)
chr7 (11-137)||(29344231-29344356)
chr7 (10-137)||(40881157-40881283)
chr7 (10-137)||(47928354-47928480)
chr7 (10-133)||(33070671-33070793)
chr7 (12-137)||(47927447-47927571)
chr7 (10-73)||(47537027-47537090)
chr7 (10-137)||(37783577-37783697)
chr7 (10-133)||(37782023-37782144)
chr7 (10-68)||(47535725-47535784)
chr7 (21-139)||(47536771-47536888)
chr7 (10-73)||(33071625-33071688)
chr7 (21-142)||(36584823-36584943)
chr7 (22-142)||(42520300-42520419)
chr7 (83-137)||(29408385-29408439)
chr7 (21-141)||(40322154-40322273)
chr7 (25-142)||(42521176-42521292)
chr7 (36-142)||(43703146-43703251)
chr7 (89-144)||(9357709-9357764)
chr7 (21-68)||(35045885-35045932)
chr7 (21-142)||(40321147-40321267)
chr7 (11-73)||(29345066-29345127)
chr7 (83-144)||(29409154-29409215)
chr7 (87-144)||(45398671-45398728)
chr7 (83-147)||(4973652-4973716)
chr7 (114-146)||(19218895-19218927)
chr7 (83-143)||(24653584-24653644)
chr7 (21-73)||(43704438-43704490)
[»] scaffold0041 (2 HSPs)
scaffold0041 (10-137)||(85000-85126)
scaffold0041 (111-149)||(1035-1073)
[»] scaffold0009 (2 HSPs)
scaffold0009 (10-133)||(204604-204726)
scaffold0009 (10-137)||(205476-205602)
[»] chr5 (25 HSPs)
chr5 (10-133)||(11907089-11907211)
chr5 (10-133)||(39135576-39135698)
chr5 (10-137)||(39134733-39134859)
chr5 (10-135)||(24071369-24071493)
chr5 (17-137)||(4904276-4904395)
chr5 (21-139)||(42962101-42962218)
chr5 (21-142)||(38603668-38603788)
chr5 (10-58)||(24070471-24070519)
chr5 (21-142)||(8358246-8358366)
chr5 (10-73)||(23679213-23679276)
chr5 (10-73)||(23855536-23855599)
chr5 (83-149)||(30915636-30915702)
chr5 (83-149)||(33362478-33362544)
chr5 (21-73)||(8359400-8359452)
chr5 (21-68)||(39051663-39051710)
chr5 (83-149)||(14356570-14356636)
chr5 (83-149)||(14357793-14357859)
chr5 (83-149)||(30673459-30673525)
chr5 (83-149)||(30916029-30916095)
chr5 (93-137)||(24070583-24070627)
chr5 (81-143)||(25212948-25213010)
chr5 (81-143)||(25277100-25277162)
chr5 (111-149)||(30674741-30674779)
chr5 (24-68)||(301441-301485)
chr5 (81-149)||(1011969-1012036)
[»] scaffold0065 (1 HSPs)
scaffold0065 (83-149)||(35501-35567)
[»] scaffold0013 (2 HSPs)
scaffold0013 (21-73)||(27909-27961)
scaffold0013 (21-73)||(32180-32232)
[»] scaffold1337 (1 HSPs)
scaffold1337 (108-142)||(397-431)
[»] scaffold0081 (1 HSPs)
scaffold0081 (114-146)||(42921-42953)


Alignment Details
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 46690343 - 46690204
Alignment:
Q  11 aatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccat 110  Q
    |||||| || |||||| | ||||||||||||||||||| ||||||||||||||||||||| ||       ||||||||||||||||||||||||||||||    
T  46690343 aatttgatctttatctatatttttgtcatcgatttggttctattttattaattttaaatctctcaaaaaagaagaccattggataaaggaggtttaccat 46690244  T
Q  111 atctaaccgtgtatcaccaacacctaatttattttactta 150  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  46690243 atctaaccgtgtatcaccaacacctaatttattttactta 46690204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 39531866 - 39531740
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    |||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||       ||||||| |||||||||||| ||| | ||    
T  39531866 caatttggtccttatctttgttttcgttatcgatttggtccaattttattaattttaaatccct-aaaaaagaagaccgttggataaaggaagttcatca 39531768  T
Q  110 tatctaaccgtgtatcaccaacacctaa 137  Q
    |||||||||||||| |||||||||||||    
T  39531767 tatctaaccgtgtaccaccaacacctaa 39531740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 11 - 147
Target Start/End: Original strand, 46688474 - 46688608
Alignment:
Q  11 aatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccat 110  Q
    |||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||         |||||||  ||||||||| ||||| | |||    
T  46688474 aatttggttcttatctttgtttttttcatcgatttggtcatattttattaattttaaatcc--taaaaaagaagaccgctggataaagcaggttcatcat 46688571  T
Q  111 atctaaccgtgtatcaccaacacctaatttattttac 147  Q
    ||||||| |||||||||||||||||||||||||||||    
T  46688572 atctaactgtgtatcaccaacacctaatttattttac 46688608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 46689551 - 46689483
Alignment:
Q  262 atctaactaaatctagaatgcaaaattctttgaacattaaacaaacatcaacacttcacaatgctttaa 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46689551 atctaactaaatctagaatgcaaaattctttgaacattaaacaaacatcaacacttcacaatgctttaa 46689483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 138
Target Start/End: Complemental strand, 50765824 - 50765697
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    |||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||| ||       ||||||||||||||||||||| || | ||    
T  50765824 caatttggtccttatctttgttttggtcatcgatttgattctattttattaattttaaatctct-caaaaagaagaccattggataaaggagattcatca 50765726  T
Q  110 tatctaaccgtgtatcaccaacacctaat 138  Q
    ||||||||||||||||  |||||||||||    
T  50765725 tatctaaccgtgtatcctcaacacctaat 50765697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 45730703 - 45730829
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    |||||||| |||||||||||||||  |||||||||| |||||||||||||||||| |||||| |       ||||||| |||||||||||| ||| | ||    
T  45730703 caatttggaccttatctttgttttcatcatcgatttagtcctattttattaatttgaaatccat-aaaaaagaagaccgttggataaaggaagttcatca 45730801  T
Q  110 tatctaaccgtgtatcaccaacacctaa 137  Q
    ||||||||||||||||||||||||||||    
T  45730802 tatctaaccgtgtatcaccaacacctaa 45730829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 53901636 - 53901761
Alignment:
Q  11 aatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccat 110  Q
    ||||||||| ||||||||||||| ||||||||||||||||  |||||||||||||||||||||       ||||||| |||||||||||| ||| | |||    
T  53901636 aatttggtctttatctttgttttcgtcatcgatttggtccacttttattaattttaaatccct-aaaaaagaagaccgttggataaaggaagttcatcat 53901734  T
Q  111 atctaaccgtgtatcaccaacacctaa 137  Q
    || |||||||||| |||||||||||||    
T  53901735 atataaccgtgtaccaccaacacctaa 53901761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 33000850 - 33000724
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    |||||||||||||| ||||||||| ||||||||||| |||||||||||||||||| |||| ||        ||||||| |||||||||||| ||  | ||    
T  33000850 caatttggtccttacctttgttttggtcatcgatttagtcctattttattaatttgaaat-ccaaaaaaaagaagaccgttggataaaggaagtacatca 33000752  T
Q  110 tatctaaccgtgtatcaccaacacctaa 137  Q
    ||||||||||||||||||||||||||||    
T  33000751 tatctaaccgtgtatcaccaacacctaa 33000724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 2088908 - 2089030
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||       | ||||||||  |||||||| ||| | ||    
T  2088908 caatttggtccttatctttgttttcatcatcaatttggtcctattttattaattttaaatccct-aaaaaagtagaccattaaataaaggaagttcatca 2089006  T
Q  110 tatctaaccgtgtatcaccaacac 133  Q
    ||||| ||||||||||||||||||    
T  2089007 tatcttaccgtgtatcaccaacac 2089030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 39530861 - 39530987
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    ||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||| ||| |||       ||||||| |||||||||| | ||| | ||    
T  39530861 caatttgatccttatctttgttttcgtcatcgatttggtcatattttattaatttt-aattcctttaaaaagaagaccgttggataaagaaagttcatca 39530959  T
Q  110 tatctaaccgtgtatcaccaacacctaa 137  Q
    |||||||||||||  |||||||||||||    
T  39530960 tatctaaccgtgtgccaccaacacctaa 39530987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 32999864 - 32999985
Alignment:
Q  11 aatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccat 110  Q
    |||||| | |||||||||||||| |||||| ||||||||||||||||||||||||||||||||       | |||| ||||||||| ||| ||| | |||    
T  32999864 aatttgattcttatctttgttttcgtcatcaatttggtcctattttattaattttaaatccct-ataaaagtagacaattggataagggaagttcatcat 32999962  T
Q  111 atctaaccgtgtatcaccaacac 133  Q
    |||| ||||||||||||||||||    
T  32999963 atcttaccgtgtatcaccaacac 32999985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 53902684 - 53902560
Alignment:
Q  11 aatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccat 110  Q
    ||||| |||||||| |||||||| |||||||||| |||| |||||||||||||||||||||||       ||||||| |||||||||||| ||| | |||    
T  53902684 aatttagtccttat-tttgttttcgtcatcgattaggtcatattttattaattttaaatccct-aaaaacgaagaccgttggataaaggaagttcatcat 53902587  T
Q  111 atctaaccgtgtatcaccaacacctaa 137  Q
    ||||||||||||  |||||||||||||    
T  53902586 atctaaccgtgttccaccaacacctaa 53902560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 50150787 - 50150850
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccct 73  Q
    ||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  50150787 caatttggtccttgtctttgttttcgtcatcaatttggtcctattttattaattttaaatccct 50150850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 4067993 - 4068118
Alignment:
Q  11 aatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccat 110  Q
    ||||||||||||||||| |||||   |||||||||| ||| ||||||||||||||| ||||||        |||||| |||||||||||| ||| | |||    
T  4067993 aatttggtccttatcttagttttctacatcgatttgatccaattttattaattttagatccctaaaaaac-aagaccgttggataaaggaagttcatcat 4068091  T
Q  111 atctaaccgtgtatcaccaacacctaa 137  Q
    ||||||||||||| |||||||||||||    
T  4068092 atctaaccgtgtaccaccaacacctaa 4068118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 21 - 149
Target Start/End: Complemental strand, 50003261 - 50003134
Alignment:
Q  21 ttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccatatctaaccgt 120  Q
    |||| ||||||||  ||||| |||||||||||||||||||||||||||  |||        |||||| |||||||||||||||  | || ||||||| ||    
T  50003261 ttatgtttgttttaatcatcaatttggtcctattttattaattttaaactccttaaaaat-aagaccgttggataaaggaggtcaatcagatctaacggt 50003163  T
Q  121 gtatcaccaacacctaatttattttactt 149  Q
    ||||||||||||| |||||||| ||||||    
T  50003162 gtatcaccaacacataatttatattactt 50003134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 5409405 - 5409532
Alignment:
Q  11 aatttggtcctt-atctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    |||||||||||| |||||||||||  ||||| ||||| ||| ||||||||||||||||| | ||       ||||||| |||||||||||||||| | ||    
T  5409405 aatttggtcctttatctttgttttcatcatcaatttgatccaattttattaattttaaacctct-taaaaagaagaccgttggataaaggaggttcatca 5409503  T
Q  110 tatctaaccgtgtatcaccaacacctaat 138  Q
     || |||| ||||||||| ||||||||||    
T  5409504 gatttaacggtgtatcactaacacctaat 5409532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 27226589 - 27226525
Alignment:
Q  10 caatttggtcctt-atctttgtttttgtcatcgatttggtcctattttattaattttaaatccct 73  Q
    ||||||||||||| || ||||||||  ||||| ||||||||||||||||||||||||||| ||||    
T  27226589 caatttggtcctttatgtttgttttcatcatcaatttggtcctattttattaattttaaacccct 27226525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 149
Target Start/End: Original strand, 8895323 - 8895361
Alignment:
Q  111 atctaaccgtgtatcaccaacacctaatttattttactt 149  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  8895323 atctaaccgtgtatcaccaacacgtaatttattttactt 8895361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 1032905 - 1032787
Alignment:
Q  18 tccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccatatctaac 117  Q
    ||||| ||||| |||| ||||||||||| || | ||||||||||||||||||||||       ||||| | |||||||||||| | | | |||||||||     
T  1032905 tccttctctttattttcgtcatcgatttagttcaattttattaattttaaatccct-gaaaaagaagatcgttggataaaggaagatcatcatatctaat 1032807  T
Q  118 cgtgtatcaccaacacctaa 137  Q
    | |||| |||||||||||||    
T  1032806 catgtaccaccaacacctaa 1032787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 21248297 - 21248248
Alignment:
Q  19 ccttatctttgtttttgtcatcgatttggtcctattttattaattttaaa 68  Q
    ||||||||||||||| |||||   ||||||||||||||||||||||||||    
T  21248297 ccttatctttgttttagtcattattttggtcctattttattaattttaaa 21248248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 382
Target Start/End: Complemental strand, 46688952 - 46688911
Alignment:
Q  341 ggagaagaactttaaatttttatgatttattattcttctgct 382  Q
    ||||||||||||| |||||| |||||||||||||||||||||    
T  46688952 ggagaagaactttgaattttcatgatttattattcttctgct 46688911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 14206752 - 14206692
Alignment:
Q  89 ttggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttattttactt 149  Q
    ||||||||| ||||| || || ||||||| |||||||||||| | ||||||||||||||||    
T  14206752 ttggataaatgaggtctatcagatctaactgtgtatcaccaatatctaatttattttactt 14206692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 14214500 - 14214440
Alignment:
Q  89 ttggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttattttactt 149  Q
    ||||||||| ||||| || || ||||||| |||||||||||| | ||||||||||||||||    
T  14214500 ttggataaatgaggtctatcagatctaactgtgtatcaccaatatctaatttattttactt 14214440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 27225511 - 27225631
Alignment:
Q  21 ttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccatatctaaccgt 120  Q
    |||| |||||||| |||||| |||| |||||||||||||||||||||| || |       ||||||| |||||||||| | ||  | || ||||||  ||    
T  27225511 ttatgtttgttttcgtcatcaatttagtcctattttattaattttaaa-cctttcaaaaagaagaccgttggataaagaaagtccatcagatctaaaggt 27225609  T
Q  121 gtatcaccaacacctaatttat 142  Q
    |||||||| |||||||||||||    
T  27225610 gtatcaccgacacctaatttat 27225631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 5384487 - 5384546
Alignment:
Q  10 caatttggtcct-tatctttgtttttgtcatcgatttggtcctattttattaattttaaa 68  Q
    |||||||||||| ||||||||||||   |||| ||||||||| |||||||||||||||||    
T  5384487 caatttggtcctctatctttgttttcaacatcaatttggtccaattttattaattttaaa 5384546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 5411277 - 5411230
Alignment:
Q  21 ttatctttgtttttgtcatcgatttggtcctattttattaattttaaa 68  Q
    ||||||||||||| | |||| || ||||||||||||||||||||||||    
T  5411277 ttatctttgttttcgccatcaatgtggtcctattttattaattttaaa 5411230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 10979149 - 10979088
Alignment:
Q  83 agaccattggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttattt 144  Q
    |||||||||||| | ||||||||| || || | || |||||||||||||| |||||||||||    
T  10979149 agaccattggattacggaggtttatcaaattttacggtgtatcaccaacatctaatttattt 10979088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 21247312 - 21247361
Alignment:
Q  19 ccttatctttgtttttgtcatcgatttggtcctattttattaattttaaa 68  Q
    ||||||||||||||| |||||   |||||| |||||||||||||||||||    
T  21247312 ccttatctttgttttagtcataattttggttctattttattaattttaaa 21247361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 44115576 - 44115636
Alignment:
Q  83 agaccattggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttatt 143  Q
    ||||| |||||||||||||||||   | |||||| | ||||||||||| ||||||||||||    
T  44115576 agaccgttggataaaggaggtttgtgagatctaatcatgtatcaccaatacctaatttatt 44115636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 48336486 - 48336546
Alignment:
Q  83 agaccattggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttatt 143  Q
    ||||| ||||||||| ||||||||  | ||||||| ||||||||||||||||  |||||||    
T  48336486 agaccgttggataaatgaggtttattagatctaactgtgtatcaccaacaccggatttatt 48336546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 11 - 151
Target Start/End: Complemental strand, 12820147 - 12820008
Alignment:
Q  11 aatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccat 110  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||       ||||||| |||||||||||||||| | |||    
T  12820147 aatttggtccttatctttgttttcgtcgtcgatttggtcctattttattaattttaaatctctcaaaaa-gaagaccgttggataaaggaggttcatcat 12820049  T
Q  111 atctaaccgtgtatcaccaacacctaatttattttacttat 151  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  12820048 atctaactgtgtatcaccaacacctaatttattttacttat 12820008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 9190492 - 9190366
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||       ||||||| |||||||||||| ||| | ||    
T  9190492 caatttggtccttatctttgttttagtcatcgatttggtccaattttattaattttaaatccct-aaaaaagaagaccgttggataaaggaagttcatca 9190394  T
Q  110 tatctaaccgtgtatcaccaacacctaa 137  Q
    |||||||||||||| |||||||||||||    
T  9190393 tatctaaccgtgtaccaccaacacctaa 9190366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 10 - 151
Target Start/End: Original strand, 12818820 - 12818960
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    |||||||||| ||||||||||||| || ||||||||| ||||||||||||||||||||||| ||        |||||| |||||||||||||||| | ||    
T  12818820 caatttggtcattatctttgttttcgttatcgatttgatcctattttattaattttaaatctctcaaaaat-aagaccgttggataaaggaggttcatca 12818918  T
Q  110 tatctaaccgtgtatcaccaacacctaatttattttacttat 151  Q
    ||||||||  ||||||||||||||||||||||||||||||||    
T  12818919 tatctaactctgtatcaccaacacctaatttattttacttat 12818960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 4534100 - 4534222
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||       | |||||||||||||||||| ||| | ||    
T  4534100 caatttggtccttatctttgttttcgtcatcaatttggtcctattttattaattttaaatccct-aaaaaagtagaccattggataaaggaagttcatca 4534198  T
Q  110 tatctaaccgtgtatcaccaacac 133  Q
    ||||| ||||||||||||||||||    
T  4534199 tatcttaccgtgtatcaccaacac 4534222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 9189460 - 9189586
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    ||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||       ||||||| |||||||||||| ||| | ||    
T  9189460 caatttggtccttatctttgtttctgtcatcaatttggtcatattttattaattttaaatccct-aaaaaagaagaccgttggataaaggaagttcatca 9189558  T
Q  110 tatctaaccgtgtatcaccaacacctaa 137  Q
    |||||||||||||| |||||||||||||    
T  9189559 tatctaaccgtgtaccaccaacacctaa 9189586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 16346165 - 16346291
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||| |       ||||||| |||||||||||| ||| | ||    
T  16346165 caatttggtccttatctttgttatcgtcatcgatttggtcctattttattaatttgaaatccat-aaaaaagaagaccgttggataaaggaagttcatca 16346263  T
Q  110 tatctaaccgtgtatcaccaacacctaa 137  Q
    ||||||||||||||||||||||||||||    
T  16346264 tatctaaccgtgtatcaccaacacctaa 16346291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 4535079 - 4534953
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    |||||||||||||||||||||||| |||||| ||||| ||||||||||||||||| |||||| |       ||||||| |||||||||||| ||| | ||    
T  4535079 caatttggtccttatctttgttttcgtcatcaatttgatcctattttattaatttgaaatccat-aaaaaagaagaccgttggataaaggaagttcatca 4534981  T
Q  110 tatctaaccgtgtatcaccaacacctaa 137  Q
    ||||||||||||||||||||||||||||    
T  4534980 tatctaaccgtgtatcaccaacacctaa 4534953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 22914240 - 22914114
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    ||||||| |||||||||||||| | |||||||||||||||||||||||||||||| |||||| |       ||||||| |||||||||||| ||| | ||    
T  22914240 caatttgatccttatctttgttatcgtcatcgatttggtcctattttattaatttgaaatccat-aaaaaagaagaccgttggataaaggaagttcatca 22914142  T
Q  110 tatctaaccgtgtatcaccaacacctaa 137  Q
    ||||||||||||||||||||||||||||    
T  22914141 tatctaaccgtgtatcaccaacacctaa 22914114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 22913258 - 22913380
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    ||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||       | ||| |||||||||||||| ||||| ||    
T  22913258 caatttgatccttatctttgttttcgtcatcaatttggtcctattttattaattttaaatccct-aaaaaagtagatcattggataaaggaagtttatca 22913356  T
Q  110 tatctaaccgtgtatcaccaacac 133  Q
    ||||| ||||| ||||| ||||||    
T  22913357 tatcttaccgtatatcatcaacac 22913380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 23767943 - 23768069
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    |||||| ||||||||||||||||| ||||||||||||||| |||||||||||||| |||||| |       || || |||| ||||||||| ||| | ||    
T  23767943 caatttagtccttatctttgttttcgtcatcgatttggtcatattttattaatttgaaatccat-aaaaaagatgatcattagataaaggaagttcatca 23768041  T
Q  110 tatctaaccgtgtatcaccaacacctaa 137  Q
    ||||||||||||||||||||||||||||    
T  23768042 tatctaaccgtgtatcaccaacacctaa 23768069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 23768531 - 23768413
Alignment:
Q  14 ttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccatatc 113  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||       | ||||||||||||| ||||  || | ||||||    
T  23768531 ttggtccttatctttgttttcgtcatcaatttggtcctattttattaattttaaatctct-aaaaaagtagaccattggatacaggaatttcatcatatc 23768433  T
Q  114 taaccgtgtatcaccaacac 133  Q
    | ||||||||||||||||||    
T  23768432 ttaccgtgtatcaccaacac 23768413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 44769757 - 44769876
Alignment:
Q  21 ttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccatatctaaccgt 120  Q
    ||||||||||||| |||||| ||||| || |||||||||||||||||| ||||       ||||||  |||||| ||||||||  | |||||||||| ||    
T  44769757 ttatctttgttttagtcatcaatttgatcatattttattaattttaaaaccct-taaaatgaagactgttggat-aaggaggtccatcatatctaacagt 44769854  T
Q  121 gtatcaccaacacctaatttat 142  Q
    ||||||||||||| ||||||||    
T  44769855 gtatcaccaacacataatttat 44769876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 11081009 - 11080943
Alignment:
Q  83 agaccattggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttattttactt 149  Q
    ||||| ||||||||| ||||| || || ||||||| ||||||||||||||||| |||||||||||||    
T  11081009 agacctttggataaatgaggtctatcagatctaactgtgtatcaccaacacctgatttattttactt 11080943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 35462960 - 35462900
Alignment:
Q  89 ttggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttattttactt 149  Q
    ||||||||| ||||| || |  ||||||| |||||||||||||||||||||||||||||||    
T  35462960 ttggataaatgaggtctatctgatctaacagtgtatcaccaacacctaatttattttactt 35462900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 11868084 - 11868029
Alignment:
Q  11 aatttggtccttatctttgtttttgtcatcgatttggtcctattttattaatttta 66  Q
    |||||||||||||||||| |||| ||  ||||||||||| ||||||||||||||||    
T  11868084 aatttggtccttatctttattttcgttttcgatttggtcgtattttattaatttta 11868029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 142
Target Start/End: Complemental strand, 44770648 - 44770532
Alignment:
Q  25 ctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccatatctaaccgtgtat 124  Q
    ||||||||| |||||| ||||| ||||||||||||||||||||| ||||       ||||||| ||||||||| ||||| || |  ||||||| ||||||    
T  44770648 ctttgttttagtcatcaatttgatcctattttattaattttaaacccct-taaaaagaagaccgttggataaatgaggtctatcggatctaacagtgtat 44770550  T
Q  125 caccaacacctaatttat 142  Q
     ||| |||| ||||||||    
T  44770549 aaccgacacataatttat 44770532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 41766200 - 41766247
Alignment:
Q  21 ttatctttgtttttgtcatcgatttggtcctattttattaattttaaa 68  Q
    ||||||||||||| ||||| | |||||| |||||||||||||||||||    
T  41766200 ttatctttgttttagtcatagttttggttctattttattaattttaaa 41766247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 41767204 - 41767155
Alignment:
Q  19 ccttatctttgtttttgtcatcgatttggtcctattttattaattttaaa 68  Q
    |||||||||| |||| |||||   ||||||||||||||||||||||||||    
T  41767204 ccttatctttattttagtcattattttggtcctattttattaattttaaa 41767155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 43414710 - 43414771
Alignment:
Q  81 gaagaccattggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttat 142  Q
    ||||||| |||||||||||||||  | || ||||||| |||||||||| |||| ||||||||    
T  43414710 gaagaccgttggataaaggaggtgcatcagatctaacggtgtatcaccgacacataatttat 43414771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 43416006 - 43415954
Alignment:
Q  21 ttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccct 73  Q
    ||||||||||||| ||||||  ||| |||| ||||||||||||||||| ||||    
T  43416006 ttatctttgttttagtcatcattttagtccgattttattaattttaaacccct 43415954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 1757544 - 1757420
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||       ||||||| |||||||||| | ||| | ||    
T  1757544 caatttggtccttatctttgttttcgtcgtcgatttggtcctattttattaattttaaatccct-caaaaagaagaccgttggataaagtaagttcatca 1757446  T
Q  110 tatctaaccgtgtatcaccaacacct 135  Q
    ||||||||||||||||||||||||||    
T  1757445 tatctaaccgtgtatcaccaacacct 1757420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 14174169 - 14174295
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    ||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||       ||||||  |||||||||||| ||| | ||    
T  14174169 caatttgatccttatctttgttttcgtcatcgattttgtcctattttattaattttaaatctct-taaaaagaagacagttggataaaggaagttcatca 14174267  T
Q  110 tatctaaccgtgtatcaccaacacctaa 137  Q
    ||||||||||||||||||||||||||||    
T  14174268 tatctaaccgtgtatcaccaacacctaa 14174295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 14178705 - 14178831
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    ||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||       ||||||  |||||||||||| ||| | ||    
T  14178705 caatttgatccttatctttgttttcgtcatcgattttgtcctattttattaattttaaatctct-taaaaagaagacagttggataaaggaagttcatca 14178803  T
Q  110 tatctaaccgtgtatcaccaacacctaa 137  Q
    ||||||||||||||||||||||||||||    
T  14178804 tatctaaccgtgtatcaccaacacctaa 14178831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 11724346 - 11724220
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    |||||||||||||||||||||||| |||||| ||||| || ||||||||| |||||||||||||       ||||||| |||||||||||| ||| | ||    
T  11724346 caatttggtccttatctttgttttcgtcatcaatttgatcatattttattgattttaaatccct-aaaaaagaagaccgttggataaaggaagttcatca 11724248  T
Q  110 tatctaaccgtgtatcaccaacacctaa 137  Q
    |||||||||||||| |||||||||||||    
T  11724247 tatctaaccgtgtaccaccaacacctaa 11724220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 27107247 - 27107369
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |       | ||||||||||||||| || ||| | ||    
T  27107247 caatttggtccttatctttgttttcgtcatcaatttggtcctattttattaattttaaatccat-aaaaatgtagaccattggataaaagaagttcatca 27107345  T
Q  110 tatctaaccgtgtatcaccaacac 133  Q
    ||||| ||||||||||||||||||    
T  27107346 tatcttaccgtgtatcaccaacac 27107369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 27149053 - 27149175
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |       | ||||||||||||||| || ||| | ||    
T  27149053 caatttggtccttatctttgttttcgtcatcaatttggtcctattttattaattttaaatccat-aaaaatgtagaccattggataaaagaagttcatca 27149151  T
Q  110 tatctaaccgtgtatcaccaacac 133  Q
    ||||| ||||||||||||||||||    
T  27149152 tatcttaccgtgtatcaccaacac 27149175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 1693030 - 1692905
Alignment:
Q  11 aatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccat 110  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||| |       ||||||| || ||||||||| ||| | |||    
T  1693030 aatttggtccttatctttgttttcgtcatcgatttggtccaattttattaatttgaaatccat-aaaaaagaagaccgttagataaaggaagttcatcat 1692932  T
Q  111 atctaaccgtgtatcaccaacacctaa 137  Q
    ||||||||||||||||||| |||||||    
T  1692931 atctaaccgtgtatcaccaccacctaa 1692905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 27108223 - 27108098
Alignment:
Q  11 aatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccat 110  Q
    ||||||| |||||||||||||||  |||||||||| |||||||||||||||||| |||||| |       ||||| | |||||||||||| ||| | |||    
T  27108223 aatttggaccttatctttgttttcatcatcgatttagtcctattttattaatttgaaatccat-aaaaaagaagatcgttggataaaggaagttcatcat 27108125  T
Q  111 atctaaccgtgtatcaccaacacctaa 137  Q
    |||||||||||||||||||||||||||    
T  27108124 atctaaccgtgtatcaccaacacctaa 27108098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 27150020 - 27149895
Alignment:
Q  11 aatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccat 110  Q
    ||||||| |||||||||||||||  |||||||||| |||||||||||||||||| |||||| |       ||||| | |||||||||||| ||| | |||    
T  27150020 aatttggaccttatctttgttttcatcatcgatttagtcctattttattaatttgaaatccat-aaaaaagaagatcgttggataaaggaagttcatcat 27149922  T
Q  111 atctaaccgtgtatcaccaacacctaa 137  Q
    |||||||||||||||||||||||||||    
T  27149921 atctaaccgtgtatcaccaacacctaa 27149895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 1692140 - 1692265
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    |||||| ||| ||||||||||||| |||||| ||||||||||| ||||||||||||||||||||       | |||||||||||||| ||| ||| | ||    
T  1692140 caatttagtctttatctttgttttcgtcatcaatttggtccta-tttattaattttaaatccct-aaaaaagtagaccattggataagggaagttcatca 1692237  T
Q  110 tatctaaccgtgtatcaccaacacctaa 137  Q
    ||||| ||||||||||||||||||||||    
T  1692238 tatcttaccgtgtatcaccaacacctaa 1692265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 142
Target Start/End: Original strand, 10673675 - 10673807
Alignment:
Q  10 caatttggtcctt-atctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacc 108  Q
    ||||||||||||| || |||||||| |||||| |||| |||||||||||||||||||||| || |       ||||||| ||| |||||||||||  | |    
T  10673675 caatttggtcctttatgtttgttttcgtcatcaatttagtcctattttattaattttaaa-cctttcaaaaagaagaccgttgaataaaggaggtccatc 10673773  T
Q  109 atatctaaccgtgtatcaccaacacctaatttat 142  Q
    ||||||||  ||||||||||| ||||||||||||    
T  10673774 atatctaaaggtgtatcaccaccacctaatttat 10673807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 13561356 - 13561476
Alignment:
Q  21 ttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccatatctaaccgt 120  Q
    ||||||||||| | |||||| |||||||||||||||||||||||||||  |||       ||||| | |||||||||| ||||  | || ||||||  ||    
T  13561356 ttatctttgttatagtcatcaatttggtcctattttattaattttaaactcct-caaaaagaagatcgttggataaagaaggtccatcagatctaatagt 13561454  T
Q  121 gtatcaccaacacctaatttat 142  Q
    ||||||||||||||||||||||    
T  13561455 gtatcaccaacacctaatttat 13561476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 13562334 - 13562214
Alignment:
Q  21 ttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccatatctaaccgt 120  Q
    |||||||| |||| |||||  |||||||||||||||||||||||||||  |||       ||||||  ||||||||||||| |  | || ||||||| ||    
T  13562334 ttatctttattttagtcataaatttggtcctattttattaattttaaactcct-aaaaaagaagactgttggataaaggagatccatcagatctaacagt 13562236  T
Q  121 gtatcaccaacacctaatttat 142  Q
    ||||||||||||||||||||||    
T  13562235 gtatcaccaacacctaatttat 13562214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 25437849 - 25437907
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaa 68  Q
    |||||||||| ||||||||||||| | |||| || || |||||||||||||||||||||    
T  25437849 caatttggtctttatctttgttttcgccatcaatctgatcctattttattaattttaaa 25437907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 18230475 - 18230538
Alignment:
Q  83 agaccattggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttatttta 146  Q
    |||||||||||||||||||||| |    || |||| ||||||||||||||||||||| ||||||    
T  18230475 agaccattggataaaggaggttcatatgatttaacagtgtatcaccaacacctaattaatttta 18230538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 682404 - 682470
Alignment:
Q  83 agaccattggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttattttactt 149  Q
    ||||| ||||||||| ||||| || || ||||| | ||||||||||||||| | |||||||||||||    
T  682404 agaccgttggataaatgaggtctatcagatctagctgtgtatcaccaacacttgatttattttactt 682470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 24318113 - 24318059
Alignment:
Q  11 aatttggtcctt-atctttgtttttgtcatcgatttggtcctattttattaattt 64  Q
    |||||||||||| ||||||||||| |||||| ||||| ||| |||||||||||||    
T  24318113 aatttggtcctttatctttgttttcgtcatcaatttgatcccattttattaattt 24318059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 10 - 138
Target Start/End: Original strand, 9822717 - 9822844
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    |||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||       ||||||  |||||||||||||||| | ||    
T  9822717 caatttggtccttatctttgttttcgtcattgatttggttctattttattaattttaaatccct-aaaaaagaagactgttggataaaggaggttcatca 9822815  T
Q  110 tatctaaccgtgtatcaccaacacctaat 138  Q
    |||||||||||||||| ||||||||||||    
T  9822816 tatctaaccgtgtatccccaacacctaat 9822844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 30743153 - 30743279
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||        |||||| |||||||||||| ||| | ||    
T  30743153 caatttggtccttatctttgttttcgtcatcgatttggtccaattttattaattttaaatccctaaaaaac-aagaccgttggataaaggaagttcatca 30743251  T
Q  110 tatctaaccgtgtatcaccaacacctaa 137  Q
    |||||||||||||| |||||||||||||    
T  30743252 tatctaaccgtgtaccaccaacacctaa 30743279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 43808571 - 43808445
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    |||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||       ||||||| || ||||||||| ||| | ||    
T  43808571 caatttggtcattatctttgttttcgtcatcgatttggtcatattttattaattttaaatccct-aaaaaagaagaccgttagataaaggaagttcatca 43808473  T
Q  110 tatctaaccgtgtatcaccaacacctaa 137  Q
    |||||||||||||| |||||||||||||    
T  43808472 tatctaaccgtgtaccaccaacacctaa 43808445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 133
Target Start/End: Complemental strand, 21246525 - 21246403
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    ||||| |||| ||||||||||||| |||||||||||||||||||||||||||||| |||||| |       ||||||| |||||||||||| ||| | ||    
T  21246525 caattcggtcattatctttgttttcgtcatcgatttggtcctattttattaatttaaaatccat-aaaaaagaagaccgttggataaaggaagttcatca 21246427  T
Q  110 tatctaaccgtgtatcaccaacac 133  Q
    ||||||||||||||||||||||||    
T  21246426 tatctaaccgtgtatcaccaacac 21246403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 43807501 - 43807623
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    ||||||||||||||||||||||||  ||||||||||| ||| ||||||||||| ||||||||||       ||||||| |||||||||||| ||| | ||    
T  43807501 caatttggtccttatctttgttttcatcatcgatttgatccaattttattaatattaaatccct-aaaaaagaagaccgttggataaaggaagttcatca 43807599  T
Q  110 tatctaaccgtgtatcaccaacac 133  Q
    |||||||||||||| |||||||||    
T  43807600 tatctaaccgtgtaccaccaacac 43807623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 45042748 - 45042813
Alignment:
Q  83 agaccattggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttattttact 148  Q
    ||||| ||||||||| ||||| || || |||||||||||||||| ||||| |||||||||||||||    
T  45042748 agaccgttggataaatgaggtatatcagatctaaccgtgtatcatcaacatctaatttattttact 45042813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 9850047 - 9850097
Alignment:
Q  21 ttatctttgtttttgtcatcgatttggtcctattttattaattttaaatcc 71  Q
    |||| |||||||| |||||| ||||| ||||||||||||||||||||||||    
T  9850047 ttatatttgttttagtcatcaatttgatcctattttattaattttaaatcc 9850097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 49619795 - 49619729
Alignment:
Q  83 agaccattggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttattttactt 149  Q
    |||||||| |||||| ||||| || || || |||| ||||||||||||||||| |||||||||||||    
T  49619795 agaccattagataaatgaggtctatcagatttaactgtgtatcaccaacacctgatttattttactt 49619729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 52439256 - 52439196
Alignment:
Q  89 ttggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttattttactt 149  Q
    ||||||||| || || || || ||||||| ||||||||||||||||||||||| |||||||    
T  52439256 ttggataaatgaagtctatcagatctaactgtgtatcaccaacacctaatttactttactt 52439196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 49618570 - 49618636
Alignment:
Q  83 agaccattggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttattttactt 149  Q
    ||||| ||||||||| ||||| || || ||||||| | ||||||||||||| | |||||||||||||    
T  49618570 agaccgttggataaatgaggtctatcagatctaactgagtatcaccaacacttgatttattttactt 49618636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 51088675 - 51088735
Alignment:
Q  83 agaccattggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttatt 143  Q
    ||||| ||||||||||||||| |   |||||||| | |||||||||||||| |||||||||    
T  51088675 agaccgttggataaaggaggtctgtgatatctaatcatgtatcaccaacacttaatttatt 51088735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 146
Target Start/End: Complemental strand, 51694446 - 51694414
Alignment:
Q  114 taaccgtgtatcaccaacacctaatttatttta 146  Q
    |||| ||||||||||||||||||||||||||||    
T  51694446 taacagtgtatcaccaacacctaatttatttta 51694414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 47244040 - 47243914
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||       ||||||| |||||||||||| ||| | ||    
T  47244040 caatttggtccttatctttgttttcgtcatcgatttggtcatattttattaattttaaatccct-aaaaaagaagaccgttggataaaggaagttcatca 47243942  T
Q  110 tatctaaccgtgtatcaccaacacctaa 137  Q
    |||||||||||||| ||| |||||||||    
T  47243941 tatctaaccgtgtaccacaaacacctaa 47243914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 5418278 - 5418153
Alignment:
Q  11 aatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccat 110  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||| |       ||||||| |||||||||||| ||| | |||    
T  5418278 aatttggtccttatctttgttttcgtcattgatttggtcctattttattaatttgaaatccat-aaaaaagaagaccgttggataaaggaagttcatcat 5418180  T
Q  111 atctaaccgtgtatcaccaacacctaa 137  Q
    |||||||||||||||||||||||||||    
T  5418179 atctaaccgtgtatcaccaacacctaa 5418153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 47573693 - 47573568
Alignment:
Q  11 aatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccat 110  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||       ||||||| |||||||||||| ||| | |||    
T  47573693 aatttggtccttatctttgtttttgtcatcgatttggtcatattttattaattttaaatctct-gaaaaagaagaccgttggataaaggaagttcatcat 47573595  T
Q  111 atctaaccgtgtatcaccaacacctaa 137  Q
    ||||||||||||| | |||||||||||    
T  47573594 atctaaccgtgtaccgccaacacctaa 47573568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 47572652 - 47572778
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    |||||||||||||||||||||||| ||  |||||||||||| ||||||||||||||||||||||       ||||||| |||||||||||| ||| | ||    
T  47572652 caatttggtccttatctttgttttcgttgtcgatttggtccaattttattaattttaaatccct-aaaaaagaagaccgttggataaaggaagttcatca 47572750  T
Q  110 tatctaaccgtgtatcaccaacacctaa 137  Q
    |||||||||||||| |||||||||||||    
T  47572751 tatctaaccgtgtaccaccaacacctaa 47572778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 50497062 - 50497187
Alignment:
Q  11 aatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccat 110  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||       ||||||| |||||||||||| ||| | |||    
T  50497062 aatttggtccttatctttgttttcgtcatcgatttggtccaattttattaattttaaatccct-aaaaaagaagaccgttggataaaggaagttcatcat 50497160  T
Q  111 atctaaccgtgtatcaccaacacctaa 137  Q
    ||||||||||| | || ||||||||||    
T  50497161 atctaaccgtgcaccagcaacacctaa 50497187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 50498022 - 50497896
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    |||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||        || |||| |||||||||||| ||| | ||    
T  50498022 caatttggtcattatctttgtttttgtcatcgatttggccatattttattaattttaaatccc-aaaaaaagatgaccgttggataaaggaagttcatca 50497924  T
Q  110 tatctaaccgtgtatcaccaacacctaa 137  Q
    |||||||||||||| |||||||||||||    
T  50497923 tatctaaccgtgtaccaccaacacctaa 50497896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 43709924 - 43709798
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    |||||||||| ||||||||||||| ||||||||||||| || |||||||||||||||||||||         |||||| |||||||||||| ||| | ||    
T  43709924 caatttggtctttatctttgttttcgtcatcgatttggaccaattttattaattttaaatccc-caaaaaacaagaccgttggataaaggaagttcatca 43709826  T
Q  110 tatctaaccgtgtatcaccaacacctaa 137  Q
    |||||||||||||| |||||||||||||    
T  43709825 tatctaaccgtgtaccaccaacacctaa 43709798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 134
Target Start/End: Original strand, 47243019 - 47243141
Alignment:
Q  11 aatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccat 110  Q
    ||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||       ||||||| |||||||||||| ||| | |||    
T  47243019 aatttggtctttatctttgttttcgtcatcgatttggtccaattttattaattttaaatccct-aaaaaagaagaccgttggataaaggaagttcatcat 47243117  T
Q  111 atctaaccgtgtatcaccaacacc 134  Q
    ||||||  ||||| ||||||||||    
T  47243118 atctaaatgtgtaccaccaacacc 47243141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 137
Target Start/End: Complemental strand, 26059833 - 26059709
Alignment:
Q  12 atttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccata 111  Q
    ||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||        |||||| |||||||||||| ||| | ||||    
T  26059833 atttggtccttatctttgttttcttcatcgatttggtccaattttattaattttaaatccctaaaaaac-aagaccgttggataaaggaagttcatcata 26059735  T
Q  112 tctaaccgtgtatcaccaacacctaa 137  Q
    ||||||| |||| || ||||||||||    
T  26059734 tctaaccatgtaccaacaacacctaa 26059709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 5417370 - 5417492
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    ||||||| |||||||||||||||| |||||| |||||||| |||||||||||||||||||||||       | ||||||||| || ||||| ||| | ||    
T  5417370 caatttgatccttatctttgttttcgtcatcaatttggtcatattttattaattttaaatccct-aaaaaagtagaccattgaatcaaggaagttcatca 5417468  T
Q  110 tatctaaccgtgtatcaccaacac 133  Q
    ||||| ||||||||||||||||||    
T  5417469 tatcttaccgtgtatcaccaacac 5417492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 26045198 - 26045261
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccct 73  Q
    |||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  26045198 caatttagtccttatctttgttttcgtcatcgatttggtccaattttattaattttaaatccct 26045261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 43708902 - 43708965
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccct 73  Q
    |||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||    
T  43708902 caatttggtccttatctttgttttcgtcatcgatttggtccaaatttattaattttaaatccct 43708965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 139
Target Start/End: Complemental strand, 21570461 - 21570344
Alignment:
Q  21 ttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccatatctaaccgt 120  Q
    |||||||||||||  ||||| ||||| ||||||||||||||||||||| | ||       ||||||| ||||||||||||||| || || |||||| |||    
T  21570461 ttatctttgttttcatcatcaatttgatcctattttattaattttaaacctct-caaaaagaagaccgttggataaaggaggtctatcagatctaatcgt 21570363  T
Q  121 gtatcaccaacacctaatt 139  Q
    ||||||||| | |||||||    
T  21570362 gtatcaccagcgcctaatt 21570344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 31204632 - 31204752
Alignment:
Q  21 ttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccatatctaaccgt 120  Q
    |||||||| ||||  ||||| |||||||||||||||||||||||||||  |||       ||||||| |||||||||||| ||  | || ||||||| ||    
T  31204632 ttatctttattttaatcatcaatttggtcctattttattaattttaaactcct-taaaaagaagaccgttggataaaggatgtccatcagatctaacagt 31204730  T
Q  121 gtatcaccaacacctaatttat 142  Q
    ||||||||||||| ||||||||    
T  31204731 gtatcaccaacacataatttat 31204752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 11482862 - 11482926
Alignment:
Q  10 caatttggtccttatctttgttttt-gtcatcgatttggtcctattttattaattttaaatccct 73  Q
    ||||||||||||||| ||| ||||| |||||| ||||||||| |||||| |||||||||||||||    
T  11482862 caatttggtccttatttttttttttcgtcatcaatttggtccgattttagtaattttaaatccct 11482926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 37642517 - 37642457
Alignment:
Q  83 agaccattggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttatt 143  Q
    ||||||||||||||| |||||||| || ||||||  ||||||||||||||||| |||||||    
T  37642517 agaccattggataaatgaggtttatcagatctaattgtgtatcaccaacacctgatttatt 37642457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 48413543 - 48413487
Alignment:
Q  81 gaagaccattggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaa 137  Q
    ||||||| |||||||||||| ||| | |||||||||||||||| |||||||||||||    
T  48413543 gaagaccgttggataaaggaagttcatcatatctaaccgtgtaccaccaacacctaa 48413487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 146
Target Start/End: Original strand, 20944443 - 20944478
Alignment:
Q  111 atctaaccgtgtatcaccaacacctaatttatttta 146  Q
    ||||||||||||||||||||||||||||||||||||    
T  20944443 atctaaccgtgtatcaccaacacctaatttatttta 20944478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 42713541 - 42713658
Alignment:
Q  21 ttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccatatctaaccgt 120  Q
    ||||||||||||||| |||| ||||||| |||||||||||||||  || || |       ||||||  |||||||||||||||  | | |||||||| ||    
T  42713541 ttatctttgtttttgccatcaatttggttctattttattaattt--aaaccttttaaaaagaagactgttggataaaggaggtccatcgtatctaacggt 42713638  T
Q  121 gtatcaccaacacctaattt 140  Q
     |||||||||||||||||||    
T  42713639 atatcaccaacacctaattt 42713658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 44219066 - 44219019
Alignment:
Q  21 ttatctttgtttttgtcatcgatttggtcctattttattaattttaaa 68  Q
    |||||||||||||| ||||| |||||||||||||||||| ||||||||    
T  44219066 ttatctttgtttttatcatcaatttggtcctattttattgattttaaa 44219019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 54822456 - 54822506
Alignment:
Q  21 ttatctttgtttttgtcatcgatttggtcctattttattaattttaaatcc 71  Q
    |||| |||||||| |||||| ||||| ||||||||||||||||||||||||    
T  54822456 ttatatttgttttagtcatcaatttgatcctattttattaattttaaatcc 54822506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 54823296 - 54823246
Alignment:
Q  21 ttatctttgtttttgtcatcgatttggtcctattttattaattttaaatcc 71  Q
    ||||||||||||| |||||| ||||| || |||||||||||||||||||||    
T  54823296 ttatctttgttttagtcatcaatttgatcatattttattaattttaaatcc 54823246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 17521951 - 17522019
Alignment:
Q  81 gaagaccattggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttattttactt 149  Q
    |||||||||||||||||  |||| ||  | ||||||| ||||||||||||||| ||||||||| |||||    
T  17521951 gaagaccattggataaacaaggtctatgagatctaacagtgtatcaccaacacttaatttattatactt 17522019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 111 - 146
Target Start/End: Complemental strand, 20945426 - 20945391
Alignment:
Q  111 atctaaccgtgtatcaccaacacctaatttatttta 146  Q
    ||||||| ||||||||||||||||||||||||||||    
T  20945426 atctaactgtgtatcaccaacacctaatttatttta 20945391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 21569328 - 21569444
Alignment:
Q  21 ttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccatatctaaccgt 120  Q
    |||||||||||||  ||||| ||||  || |||||||||||||||||| | ||       ||||||| |||||||||||||||  | || ||||||| ||    
T  21569328 ttatctttgttttcatcatctatttaatcatattttattaattttaaacctctcaaaaa-gaagaccgttggataaaggaggtccatcagatctaacagt 21569426  T
Q  121 gtatcaccaacacctaat 138  Q
    ||||||| ||||||||||    
T  21569427 gtatcactaacacctaat 21569444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 49923742 - 49923676
Alignment:
Q  83 agaccattggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttattttactt 149  Q
    ||||| ||||||| | ||||| || || ||||||| ||||||||||||||| | |||||||||||||    
T  49923742 agaccgttggatagatgaggtctatcagatctaactgtgtatcaccaacacgtgatttattttactt 49923676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 54372885 - 54372945
Alignment:
Q  83 agaccattggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttatt 143  Q
    ||||| ||||||||| ||||| ||  | ||||||| ||||||||||||||||| |||||||    
T  54372885 agaccgttggataaatgaggtctattagatctaactgtgtatcaccaacacctgatttatt 54372945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 54373929 - 54373869
Alignment:
Q  83 agaccattggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttatt 143  Q
    |||||| |||||||| ||||| ||  | ||||||| ||||||||||||||||| |||||||    
T  54373929 agaccactggataaatgaggtctataagatctaactgtgtatcaccaacacctgatttatt 54373869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 20630721 - 20630595
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||       ||| ||| |||||||||||| ||| | ||    
T  20630721 caatttggtccttatctttgttttcgtcatcgatttggtccaattttattaattttaaatccct-aaaaaagaataccgttggataaaggaagttcatca 20630623  T
Q  110 tatctaaccgtgtatcaccaacacctaa 137  Q
    |||||||||||||| |||||||||||||    
T  20630622 tatctaaccgtgtaccaccaacacctaa 20630595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 30179601 - 30179476
Alignment:
Q  11 aatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccat 110  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||| |        |||||| |||||||||||| ||| | |||    
T  30179601 aatttggtctttatctttgttttcgtcatcgatttggtcctattttattaatttgaaatccataaaaaaa-aagaccgttggataaaggaagttcatcat 30179503  T
Q  111 atctaaccgtgtatcaccaacacctaa 137  Q
    |||||||||||||||||||||||||||    
T  30179502 atctaaccgtgtatcaccaacacctaa 30179476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 10 - 130
Target Start/End: Complemental strand, 33553415 - 33553296
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||       ||||||| ||| |||||||| | | | ||    
T  33553415 caatttggtccttatctttgttttcgtcatcgatttggtcctattttattaattttaaatctct-caaaaagaagaccgttgaataaaggaagctcatca 33553317  T
Q  110 tatctaaccgtgtatcaccaa 130  Q
    |||||||||||||||||||||    
T  33553316 tatctaaccgtgtatcaccaa 33553296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 30178614 - 30178733
Alignment:
Q  13 tttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccatat 112  Q
    ||||||| ||||||||||||| |||||| ||||| |||||||||||||||||||||| |||       | |||||||||||||||||| ||| | |||||    
T  30178614 tttggtcgttatctttgttttcgtcatcaatttgatcctattttattaattttaaatacct-aaaaaagtagaccattggataaaggaagttcatcatat 30178712  T
Q  113 ctaaccgtgtatcaccaacac 133  Q
    || || ||| |||||||||||    
T  30178713 cttacagtgcatcaccaacac 30178733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 135
Target Start/End: Complemental strand, 39272259 - 39272136
Alignment:
Q  11 aatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccat 110  Q
    ||||||||| ||||||||||||| |||| ||||||| || |||||| ||||||||||||| ||       |||||||  || |||||||| ||| | |||    
T  39272259 aatttggtcattatctttgttttcgtcagcgatttgatcatatttttttaattttaaatctct-aaaaaagaagaccgatgaataaaggaagttcatcat 39272161  T
Q  111 atctaaccgtgtatcaccaacacct 135  Q
    |||||||||||||||||||||||||    
T  39272160 atctaaccgtgtatcaccaacacct 39272136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 139
Target Start/End: Original strand, 370845 - 370962
Alignment:
Q  21 ttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccatatctaaccgt 120  Q
    |||||||||||||| ||||| ||||| |||||||||||| |||||||| | ||        |||||| ||||||||| ||||| || || ||||||  ||    
T  370845 ttatctttgtttttatcatcaatttgatcctattttattgattttaaacctctaaaaaat-aagaccgttggataaatgaggtctatcaaatctaatggt 370943  T
Q  121 gtatcaccaacacctaatt 139  Q
    |||||||||||||||||||    
T  370944 gtatcaccaacacctaatt 370962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 10330784 - 10330901
Alignment:
Q  21 ttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccatatctaaccgt 120  Q
    ||||||||||||| | |||  ||||||||||||||||||||||||||| ||||       |||||| |||||||||| ||||| || || ||||||| ||    
T  10330784 ttatctttgttttagccattaatttggtcctattttattaattttaaacccct-taaaaagaagactattggataaa-gaggtctatcagatctaacagt 10330881  T
Q  121 gtatcaccaacacctaattt 140  Q
    ||||||| ||||| ||||||    
T  10330882 gtatcacaaacacgtaattt 10330901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 12364330 - 12364391
Alignment:
Q  84 gaccattggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttatttt 145  Q
    |||||||||||||| ||||| || || ||||||| ||||||||||||||| |||||||||||    
T  12364330 gaccattggataaatgaggtctatcagatctaactgtgtatcaccaacacataatttatttt 12364391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 38593112 - 38593156
Alignment:
Q  24 tctttgtttttgtcatcgatttggtcctattttattaattttaaa 68  Q
    |||||||||| |||||| |||||||||||||||||||||||||||    
T  38593112 tctttgttttagtcatcaatttggtcctattttattaattttaaa 38593156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 38596708 - 38596752
Alignment:
Q  24 tctttgtttttgtcatcgatttggtcctattttattaattttaaa 68  Q
    |||||||||| |||||| |||||||||||||||||||||||||||    
T  38596708 tctttgttttagtcatcaatttggtcctattttattaattttaaa 38596752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 372005 - 371889
Alignment:
Q  21 ttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccatatctaaccgt 120  Q
    |||||||||||||  ||||| ||||| ||||||||||||||||||||| | ||       || |||  |||||||||||||||| | || ||||||| ||    
T  372005 ttatctttgttttcatcatcaatttgatcctattttattaattttaaacctct-caaaaagatgactgttggataaaggaggttcatcagatctaacggt 371907  T
Q  121 gtatcaccaacacctaat 138  Q
    ||||||| ||||||||||    
T  371906 gtatcactaacacctaat 371889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 20921656 - 20921706
Alignment:
Q  89 ttggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatt 139  Q
    ||||||||| ||||| || |||||||||| || ||||||||||||||||||    
T  20921656 ttggataaatgaggtctatcatatctaactgtatatcaccaacacctaatt 20921706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 29344231 - 29344356
Alignment:
Q  11 aatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccat 110  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||| |       ||||||| |||||||||||| ||| | |||    
T  29344231 aatttggtccttatctttgttttcgtcatcgatttggtcctatttttttaatttgaaatccat-aaaaaagaagaccgttggataaaggaagttcatcat 29344329  T
Q  111 atctaaccgtgtatcaccaacacctaa 137  Q
    |||||||||||||||||||||||||||    
T  29344330 atctaaccgtgtatcaccaacacctaa 29344356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 40881157 - 40881283
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||       ||||||| ||||||||| || ||| | ||    
T  40881157 caatttggtccttatctttatttttgtcatcaatttggtcatattttattaattttaaatccct-aaaaaagaagaccgttggataaaagaagttcatca 40881255  T
Q  110 tatctaaccgtgtatcaccaacacctaa 137  Q
    |||||||||||||| |||||||||||||    
T  40881256 tatctaaccgtgtaccaccaacacctaa 40881283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 47928480 - 47928354
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    ||||||||||||||||||||||||   |||||||||||||| ||||||||||||||||||||||        |||||| |||||||||||| ||| | ||    
T  47928480 caatttggtccttatctttgttttctacatcgatttggtccaattttattaattttaaatccctaaaaaac-aagaccgttggataaaggaagttcatca 47928382  T
Q  110 tatctaaccgtgtatcaccaacacctaa 137  Q
    ||| ||||| ||||||| ||||||||||    
T  47928381 tatttaaccatgtatcatcaacacctaa 47928354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 33070671 - 33070793
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    |||||||||| |||||||||||||||||||| ||||| || ||||||||||||||||||||| |       ||||||| |||||||||| | ||| | ||    
T  33070671 caatttggtctttatctttgtttttgtcatcaatttgatcatattttattaattttaaatccat-aaaaaagaagaccgttggataaagcaagttcatca 33070769  T
Q  110 tatctaaccgtgtatcaccaacac 133  Q
    |||||||||||||| |||| ||||    
T  33070770 tatctaaccgtgtaccacccacac 33070793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 12 - 137
Target Start/End: Original strand, 47927447 - 47927571
Alignment:
Q  12 atttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccata 111  Q
    ||||||||||||||||||||||   |||||||||||| | ||||||||||||||||||||||        |||| | |||||||||||| ||| | ||||    
T  47927447 atttggtccttatctttgttttctacatcgatttggttcaattttattaattttaaatccctaaaaaat-aagatcgttggataaaggaagttcatcata 47927545  T
Q  112 tctaaccgtgtatcaccaacacctaa 137  Q
    |||||||||||| |||||||| ||||    
T  47927546 tctaaccgtgtaccaccaacatctaa 47927571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 47537090 - 47537027
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccct 73  Q
    ||||||||||||||||||| |||| |||||| ||| ||||||||||||||||||||||||||||    
T  47537090 caatttggtccttatctttattttcgtcatcaattcggtcctattttattaattttaaatccct 47537027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 37783697 - 37783577
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    |||||||||| ||||||||||||| |||||||| ||||||||||||||||||||| |||||| |       ||||||| |||||||||||| ||          
T  37783697 caatttggtctttatctttgttttcgtcatcgagttggtcctattttattaatttgaaatccat-aaaaaagaagaccgttggataaaggaagt------ 37783605  T
Q  110 tatctaaccgtgtatcaccaacacctaa 137  Q
    ||||||||||| ||||||||||||||||    
T  37783604 tatctaaccgtatatcaccaacacctaa 37783577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 37782023 - 37782144
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    |||||||||||||||||||||||| || ||  || |||||||||||||||||||||||||||||       | |||||||||||||| ||| ||| | ||    
T  37782023 caatttggtccttatctttgttttcgtgataaatatggtcctattttattaattttaaatccct-aaaaaagtagaccattggataagggaagttcatca 37782121  T
Q  110 tatctaaccgtgtatcaccaacac 133  Q
    ||||| | ||||||||||||||||    
T  37782122 tatctta-cgtgtatcaccaacac 37782144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 47535725 - 47535784
Alignment:
Q  10 caatttggtcctt-atctttgtttttgtcatcgatttggtcctattttattaattttaaa 68  Q
    ||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||    
T  47535725 caatttggtcctttatctttgtttttatcatcaatttggtcctattttattaattttaaa 47535784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 139
Target Start/End: Complemental strand, 47536888 - 47536771
Alignment:
Q  21 ttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccatatctaaccgt 120  Q
    |||||||||||||| ||||| |||||||||||||||||| ||||||||   ||       ||||||| ||||||||| ||||| || || ||||||  ||    
T  47536888 ttatctttgtttttatcatcaatttggtcctattttattgattttaaacttct-caaaaagaagaccgttggataaaagaggtctatcagatctaatggt 47536790  T
Q  121 gtatcaccaacacctaatt 139  Q
    |||||||||||||||||||    
T  47536789 gtatcaccaacacctaatt 47536771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 33071688 - 33071625
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccct 73  Q
    ||||||| |||||||||||||||| ||| | |||||| ||| ||||||||||||||||||||||    
T  33071688 caatttgatccttatctttgttttcgtcgttgatttgatccaattttattaattttaaatccct 33071625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 36584943 - 36584823
Alignment:
Q  21 ttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccatatctaaccgt 120  Q
    |||||||| |||| |||||| |||||||| |||||||||||||||||| ||||       ||||||| |||||||||||||||  |  ||||||||  ||    
T  36584943 ttatctttattttagtcatcaatttggtcatattttattaattttaaagccct-taaaacgaagaccgttggataaaggaggtccattatatctaagagt 36584845  T
Q  121 gtatcaccaacacctaatttat 142  Q
    | ||||||||||| ||||||||    
T  36584844 ggatcaccaacacataatttat 36584823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 42520300 - 42520419
Alignment:
Q  22 tatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccatatctaaccgtg 121  Q
    |||||||||||| |||||| |||| ||| |||||||| ||||||||| |||        | ||||| ||||||||||||||| || || ||||||| |||    
T  42520300 tatctttgttttagtcatcaattttgtcatattttatcaattttaaa-cccattaaaaagtagaccgttggataaaggaggtctatcagatctaacggtg 42520398  T
Q  122 tatcaccaacacctaatttat 142  Q
    |||||||||||| ||||||||    
T  42520399 tatcaccaacacataatttat 42520419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 29408385 - 29408439
Alignment:
Q  83 agaccattggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaa 137  Q
    ||||||||||||||| ||||| || || ||||||| |||||||||||||||||||    
T  29408385 agaccattggataaatgaggtctatcagatctaacggtgtatcaccaacacctaa 29408439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 141
Target Start/End: Complemental strand, 40322273 - 40322154
Alignment:
Q  21 ttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccatatctaaccgt 120  Q
    |||||||||||||  ||||| ||||| |||||||||||||||||||||  |||       |||||| ||||||||||||||||  | |  |||||||  |    
T  40322273 ttatctttgttttaatcatcaatttgatcctattttattaattttaaactcct-taaaaagaagacaattggataaaggaggtccatcggatctaacgat 40322175  T
Q  121 gtatcaccaacacctaattta 141  Q
    ||||||||||||| |||||||    
T  40322174 gtatcaccaacacataattta 40322154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 142
Target Start/End: Complemental strand, 42521292 - 42521176
Alignment:
Q  25 ctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccatatctaaccgtgtat 124  Q
    ||||||||| |||||| ||||||||||||||||| |||||||||  |||        |||||| |||||||||||||||  | |  ||||||| ||||||    
T  42521292 ctttgttttagtcatcaatttggtcctattttatcaattttaaaatccttaaaaat-aagaccgttggataaaggaggtccatcggatctaacagtgtat 42521194  T
Q  125 caccaacacctaatttat 142  Q
    ||||||||| ||| ||||    
T  42521193 caccaacacataacttat 42521176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 142
Target Start/End: Original strand, 43703146 - 43703251
Alignment:
Q  36 tcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccatatctaaccgtgtatcaccaacacct 135  Q
    ||||| ||||||| ||||||||||||||||||||  ||       ||||||| |||||||||||||||  | |  ||||||| ||||||||||||||| |    
T  43703146 tcatcaatttggtactattttattaattttaaatttcttaaaaa-gaagaccgttggataaaggaggtgcatcggatctaacggtgtatcaccaacacat 43703244  T
Q  136 aatttat 142  Q
    |||||||    
T  43703245 aatttat 43703251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 9357764 - 9357709
Alignment:
Q  89 ttggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttattt 144  Q
    ||||| || |||||||||||| |||| |  ||||||||||||||||||||||||||    
T  9357764 ttggaaaagggaggtttaccagatcttatagtgtatcaccaacacctaatttattt 9357709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 35045932 - 35045885
Alignment:
Q  21 ttatctttgtttttgtcatcgatttggtcctattttattaattttaaa 68  Q
    |||||||||||||  ||||| ||||| |||||||||||||||||||||    
T  35045932 ttatctttgttttaatcatcaatttgatcctattttattaattttaaa 35045885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 40321147 - 40321267
Alignment:
Q  21 ttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccatatctaaccgt 120  Q
    |||||||||||||  ||||| |||||| ||| ||||||||||||||||  | |       ||||||| |||||||||||||||  |  | ||||||| ||    
T  40321147 ttatctttgttttaatcatcaatttgggccttttttattaattttaaaatcattaaaaa-gaagaccgttggataaaggaggtccattagatctaacagt 40321245  T
Q  121 gtatcaccaacacctaatttat 142  Q
    ||||||||||||| ||||||||    
T  40321246 gtatcaccaacacataatttat 40321267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 29345127 - 29345066
Alignment:
Q  11 aatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccct 73  Q
    ||||||||| ||||||| | ||| |||||| ||||| || |||||||||||||||||||||||    
T  29345127 aatttggtcattatctt-gctttcgtcatcaatttgatcgtattttattaattttaaatccct 29345066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 29409215 - 29409154
Alignment:
Q  83 agaccattggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttattt 144  Q
    ||||| ||||||||| ||| | || || ||||||| |||||| |||||||||||||||||||    
T  29409215 agaccgttggataaatgagatctatcagatctaacagtgtataaccaacacctaatttattt 29409154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 45398671 - 45398728
Alignment:
Q  87 cattggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttattt 144  Q
    |||||||||| ||||||||| || |||| |  |||||||||||||| |||||||||||    
T  45398671 cattggataagggaggtttatcaaatcttatagtgtatcaccaacatctaatttattt 45398728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 4973652 - 4973716
Alignment:
Q  83 agaccattggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttattttac 147  Q
    ||||| ||||||| | ||||| || |||||||||| ||||||||||||||  | |||||||||||    
T  4973652 agaccgttggatagatgaggtctatcatatctaactgtgtatcaccaacatgtgatttattttac 4973716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 146
Target Start/End: Complemental strand, 19218927 - 19218895
Alignment:
Q  114 taaccgtgtatcaccaacacctaatttatttta 146  Q
    |||| ||||||||||||||||||||||||||||    
T  19218927 taacagtgtatcaccaacacctaatttatttta 19218895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 24653644 - 24653584
Alignment:
Q  83 agaccattggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttatt 143  Q
    ||||| ||||||||||||||| |   | |||||||| |||||||||||||| |||||||||    
T  24653644 agaccgttggataaaggaggtctgggagatctaaccatgtatcaccaacacttaatttatt 24653584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 43704490 - 43704438
Alignment:
Q  21 ttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccct 73  Q
    ||||||||||||| ||||||  |||  ||||||||||||||||||||| ||||    
T  43704490 ttatctttgttttagtcatcattttaatcctattttattaattttaaacccct 43704438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 85126 - 85000
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||       ||||||| ||||||||| || ||| | ||    
T  85126 caatttggtccttatctttatttttgtcatcaatttggtcatattttattaattttaaatccct-aaaaaagaagaccgttggataaaagaagttcatca 85028  T
Q  110 tatctaaccgtgtatcaccaacacctaa 137  Q
    |||||||||||||| |||||||||||||    
T  85027 tatctaaccgtgtaccaccaacacctaa 85000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 149
Target Start/End: Complemental strand, 1073 - 1035
Alignment:
Q  111 atctaaccgtgtatcaccaacacctaatttattttactt 149  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  1073 atctaaccgtgtatcaccaacaccaaatttattttactt 1035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 204604 - 204726
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    |||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||       | |||||||||||||||||| ||| | ||    
T  204604 caatttggtcattatctttgttttcgtcatcaatttggtcctattttattaattttaaatccct-aaaaaagtagaccattggataaaggaagttcatca 204702  T
Q  110 tatctaaccgtgtatcaccaacac 133  Q
    ||||| ||||||||||||||||||    
T  204703 tatcttaccgtgtatcaccaacac 204726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 205602 - 205476
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||| |        || ||| |||||||||||| ||| | ||    
T  205602 caatttggtccttatctttgttttcgtcatcgatttcgtcctattttattaatttgaaatccataaaaaat-aataccgttggataaaggaagttcatca 205504  T
Q  110 tatctaaccgtgtatcaccaacacctaa 137  Q
    ||||||||||||||||||||||||||||    
T  205503 tatctaaccgtgtatcaccaacacctaa 205476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 10 - 133
Target Start/End: Complemental strand, 11907211 - 11907089
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    |||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||       | |||||||||||||||||| ||| | ||    
T  11907211 caatttggtccttatctttgttttcgtcatcaatttggtcatattttattaattttaaatccct-aaaaaagtagaccattggataaaggaagttcatca 11907113  T
Q  110 tatctaaccgtgtatcaccaacac 133  Q
    ||||| ||||||||||||||||||    
T  11907112 tatcttaccgtgtatcaccaacac 11907089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 10 - 133
Target Start/End: Complemental strand, 39135698 - 39135576
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    |||||||||| |||||||||||||  ||||| |||||||||||||||||||||||||||||||        | |||||||||||||||||| ||| | ||    
T  39135698 caatttggtcattatctttgttttcctcatcaatttggtcctattttattaattttaaatccc-caaaaaagtagaccattggataaaggaagttcatca 39135600  T
Q  110 tatctaaccgtgtatcaccaacac 133  Q
    ||||| ||||||||||||||||||    
T  39135599 tatcttaccgtgtatcaccaacac 39135576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 39134733 - 39134859
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    ||||||||| |||||||||||||| | |||| ||||||| ||||||||||||||| ||||||||       ||| ||| |||||||||||| ||| | ||    
T  39134733 caatttggttcttatctttgttttcgacatcaatttggtgctattttattaatttgaaatccct-aaaaaagaataccgttggataaaggaagttcatca 39134831  T
Q  110 tatctaaccgtgtatcaccaacacctaa 137  Q
    ||||||||||||||||||||||||||||    
T  39134832 tatctaaccgtgtatcaccaacacctaa 39134859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 24071493 - 24071369
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttacca 109  Q
    |||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||        |||||| |||||||||||| ||| | ||    
T  24071493 caatttggtccttatctttgttttcgtcatccatttggtccaattttattaattttaaatccctaaaaaac-aagaccgttggataaaggaagttcatca 24071395  T
Q  110 tatctaaccgtgtatcaccaacacct 135  Q
    ||||| |||||||| || ||||||||    
T  24071394 tatctcaccgtgtaccaacaacacct 24071369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 4904276 - 4904395
Alignment:
Q  17 gtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccatatctaa 116  Q
    |||||||||||||||||  |||||||||||||| |||||||||||||||||||  ||       ||||||| |||||||||||| ||| | |||||||||    
T  4904276 gtccttatctttgttttcatcatcgatttggtcatattttattaattttaaatttct-aaaaaagaagaccgttggataaaggaagttcatcatatctaa 4904374  T
Q  117 ccgtgtatcaccaacacctaa 137  Q
    ||||||| ||| |||||||||    
T  4904375 ccgtgtaccacaaacacctaa 4904395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 139
Target Start/End: Original strand, 42962101 - 42962218
Alignment:
Q  21 ttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccatatctaaccgt 120  Q
    |||||||||||||  ||||| ||||||||||||||||||||||||||| | ||       ||||||| ||||||||||||||| ||  | ||||||  ||    
T  42962101 ttatctttgttttcatcatcaatttggtcctattttattaattttaaacctct-caaaaagaagaccgttggataaaggaggtctataagatctaatggt 42962199  T
Q  121 gtatcaccaacacctaatt 139  Q
    |||||||||||||||||||    
T  42962200 gtatcaccaacacctaatt 42962218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 38603788 - 38603668
Alignment:
Q  21 ttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccatatctaaccgt 120  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||  |||       ||||||| |||||||||| ||||  | || ||||||  ||    
T  38603788 ttatctttgttttagtcatcaatttggtcctattttattaattttaaactcct-aaaaaagaagaccgttggataaagaaggtccatcagatctaatagt 38603690  T
Q  121 gtatcaccaacacctaatttat 142  Q
    ||||||||||||||| ||||||    
T  38603689 gtatcaccaacacctcatttat 38603668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 24070471 - 24070519
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttat 58  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||    
T  24070471 caatttggtccttatctttgtttttgtcattgatttggtccaattttat 24070519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 8358246 - 8358366
Alignment:
Q  21 ttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccctnnnnnnngaagaccattggataaaggaggtttaccatatctaaccgt 120  Q
    ||||||||||||| ||||||  ||||||| ||||||||||||||||||| |||       ||||||| || | ||||||||||  | || ||||||| ||    
T  8358246 ttatctttgttttagtcatcattttggtcatattttattaattttaaattcct-taaaaagaagaccgttcgttaaaggaggtccatcaaatctaacggt 8358344  T
Q  121 gtatcaccaacacctaatttat 142  Q
    ||||||||||||| ||||||||    
T  8358345 gtatcaccaacacataatttat 8358366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 23679213 - 23679276
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccct 73  Q
    |||||| || ||||||||| |||| |||||||||||| ||||||||||||||| ||||||||||    
T  23679213 caatttagttcttatctttattttcgtcatcgatttgatcctattttattaatattaaatccct 23679276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 23855599 - 23855536
Alignment:
Q  10 caatttggtccttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccct 73  Q
    |||||| || ||||||||| |||| |||||||||||| ||||||||||||||| ||||||||||    
T  23855599 caatttagttcttatctttattttcgtcatcgatttgatcctattttattaatattaaatccct 23855536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 30915636 - 30915702
Alignment:
Q  83 agaccattggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttattttactt 149  Q
    ||||||||||||| | ||||| || || ||||||| ||||||||||||||||| |||||||||||||    
T  30915636 agaccattggatatatgaggtctatcagatctaactgtgtatcaccaacacctgatttattttactt 30915702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 33362544 - 33362478
Alignment:
Q  83 agaccattggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttattttactt 149  Q
    ||||||||||||||| ||||| || || ||||||| |||||||||||| |||| |||||||||||||    
T  33362544 agaccattggataaatgaggtctatcagatctaactgtgtatcaccaataccttatttattttactt 33362478  T

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Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 8359452 - 8359400
Alignment:
Q  21 ttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccct 73  Q
    ||||||||||||| ||||||  |||||||||||||||| ||||||||||||||    
T  8359452 ttatctttgttttagtcatcattttggtcctattttataaattttaaatccct 8359400  T

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Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 39051710 - 39051663
Alignment:
Q  21 ttatctttgtttttgtcatcgatttggtcctattttattaattttaaa 68  Q
    ||||||||||||| |||||| ||||| |||||||||||||||||||||    
T  39051710 ttatctttgttttagtcatcaatttgatcctattttattaattttaaa 39051663  T

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Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 14356570 - 14356636
Alignment:
Q  83 agaccattggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttattttactt 149  Q
    |||||||||||| || ||||| || || ||||||  ||||||||||||||||| |||||||||||||    
T  14356570 agaccattggatgaatgaggtctatcacatctaattgtgtatcaccaacacctgatttattttactt 14356636  T

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Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 14357859 - 14357793
Alignment:
Q  83 agaccattggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttattttactt 149  Q
    ||||| ||||||||| ||| | || |||||||||| ||||||||||||||||| | |||||||||||    
T  14357859 agaccgttggataaatgagatctatcatatctaactgtgtatcaccaacacctgaattattttactt 14357793  T

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Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 30673459 - 30673525
Alignment:
Q  83 agaccattggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttattttactt 149  Q
    ||||| |||||||||||||||||   | || ||||| ||||||||||||||||||||||||| ||||    
T  30673459 agaccgttggataaaggaggtttgtgagatttaaccatgtatcaccaacacctaatttatttcactt 30673525  T

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Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 30916095 - 30916029
Alignment:
Q  83 agaccattggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttattttactt 149  Q
    |||||||||||||||  |||| || || ||||||| |||||| |||||||||| |||||||||||||    
T  30916095 agaccattggataaattaggtctatcagatctaactgtgtattaccaacacctgatttattttactt 30916029  T

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Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 24070583 - 24070627
Alignment:
Q  93 ataaaggaggtttaccatatctaaccgtgtatcaccaacacctaa 137  Q
    |||||||| ||| | ||||||||||||||||||||||||||||||    
T  24070583 ataaaggaagttcatcatatctaaccgtgtatcaccaacacctaa 24070627  T

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Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 143
Target Start/End: Complemental strand, 25213010 - 25212948
Alignment:
Q  81 gaagaccattggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttatt 143  Q
    ||||||| |||||||||||||||||   | |||||| | ||||||||||| ||||||||||||    
T  25213010 gaagaccgttggataaaggaggtttgtgagatctaatcatgtatcaccaatacctaatttatt 25212948  T

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Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 143
Target Start/End: Complemental strand, 25277162 - 25277100
Alignment:
Q  81 gaagaccattggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttatt 143  Q
    ||||||| |||||||||||||||||   | |||||| | ||||||||||| ||||||||||||    
T  25277162 gaagaccgttggataaaggaggtttgtgagatctaatcatgtatcaccaatacctaatttatt 25277100  T

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Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 149
Target Start/End: Complemental strand, 30674779 - 30674741
Alignment:
Q  111 atctaaccgtgtatcaccaacacctaatttattttactt 149  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  30674779 atctaaccatgtatcaccaacacctaatttatttcactt 30674741  T

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Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 301441 - 301485
Alignment:
Q  24 tctttgtttttgtcatcgatttggtcctattttattaattttaaa 68  Q
    |||||||||| | |||| ||||| |||||||||||||||||||||    
T  301441 tctttgttttagccatcaatttgatcctattttattaattttaaa 301485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 1012036 - 1011969
Alignment:
Q  81 gaagaccattggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttattttactt 149  Q
    ||||||| || |||||||||||| ||| | ||||||| |||||||| |||||| |||||| ||||||||    
T  1012036 gaagaccgtttgataaaggaggtctacgagatctaacggtgtatcatcaacacataattt-ttttactt 1011969  T

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Target: scaffold0065 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 35501 - 35567
Alignment:
Q  83 agaccattggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttattttactt 149  Q
    ||||||||||||||| |||||||| || ||||||| |||||||||||||||||||||||||||||||    
T  35501 agaccattggataaatgaggtttatcagatctaactgtgtatcaccaacacctaatttattttactt 35567  T

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Target: scaffold0013 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 27909 - 27961
Alignment:
Q  21 ttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccct 73  Q
    ||||||||||||| | |||| | ||||||||||||||||||||||||||||||    
T  27909 ttatctttgttttagccatcaagttggtcctattttattaattttaaatccct 27961  T

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Target: scaffold0013; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 32180 - 32232
Alignment:
Q  21 ttatctttgtttttgtcatcgatttggtcctattttattaattttaaatccct 73  Q
    ||||||||||||| | |||| ||||||||||||||||||||||||||| ||||    
T  32180 ttatctttgttttagccatcaatttggtcctattttattaattttaaacccct 32232  T

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Target: scaffold1337 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1337
Description:

Target: scaffold1337; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 142
Target Start/End: Original strand, 397 - 431
Alignment:
Q  108 catatctaaccgtgtatcaccaacacctaatttat 142  Q
    |||||||||||||||||||||||||||||||||||    
T  397 catatctaaccgtgtatcaccaacacctaatttat 431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 146
Target Start/End: Complemental strand, 42953 - 42921
Alignment:
Q  114 taaccgtgtatcaccaacacctaatttatttta 146  Q
    |||| ||||||||||||||||||||||||||||    
T  42953 taacagtgtatcaccaacacctaatttatttta 42921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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