View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14222_low_16 (Length: 335)
Name: NF14222_low_16
Description: NF14222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14222_low_16 |
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| [»] scaffold0331 (1 HSPs) |
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Alignment Details
Target: scaffold0331 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0331
Description:
Target: scaffold0331; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 1576 - 1338
Alignment:
| Q |
13 |
aatattcagagtagcatatctagcagtgaaaatttgttatcaggcatatcgatatcaaaaattctaaagagtaatttccttattcttctataccgataac |
112 |
Q |
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| T |
1576 |
aatattcagagtagcatatctagcagtgaaaatttgttatcaggcatatcgatatcaaaaatcctaaagagtaatttccttattcttctataccgataac |
1477 |
T |
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| Q |
113 |
aaagattcatatgaataaattttaccttgagaaagtt--------gagttgaagtgcgaacgacggcgaaacccaatagcaaaaccaattgcatagaact |
204 |
Q |
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| T |
1476 |
aaagattcatatgaataaattttaccttgagaaagttgagtaggagagttgaagtgcaaacgacggcgaaacccaatagcaaaaccaattgcatagaact |
1377 |
T |
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| Q |
205 |
tagaactgagaatgcataatacaaatctagaaatttacc |
243 |
Q |
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| T |
1376 |
tagaactgagaatgcataatacaaatctagaaatttacc |
1338 |
T |
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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 152
Target Start/End: Complemental strand, 48010292 - 48010153
Alignment:
| Q |
14 |
atattcagagtagcatatctagcagtgaaaatttgttatcaggcatatcgatatcaaaaattctaaagagtaatttccttattc-ttctataccgataac |
112 |
Q |
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| T |
48010292 |
atattcagggtaacatgtctagcaatgaaaattcgtaatctagcatatcaataacaaaaattctgaagattaatttcctgattcattctataccggtaac |
48010193 |
T |
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| Q |
113 |
aaagattcatatgaataaattttaccttgagaaagttgag |
152 |
Q |
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| T |
48010192 |
aatgattcaaatgaataaattttaccttgagaaagttgag |
48010153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 7402907 - 7402960
Alignment:
| Q |
190 |
caattgcatagaacttagaactgagaatgcataatacaaatctagaaatttacc |
243 |
Q |
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| T |
7402907 |
caattgcacagaacttagaactgagaatgcataatacaaatctagaaatttacc |
7402960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 15842575 - 15842533
Alignment:
| Q |
98 |
ttctataccgataacaaagattcatatgaataaattttacctt |
140 |
Q |
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| T |
15842575 |
ttctataccaataacaaagattcaaatgaataaattttacctt |
15842533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 44473658 - 44473706
Alignment:
| Q |
14 |
atattcagagtagcatatctagcagtgaaaatttgttatcaggcatatc |
62 |
Q |
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| T |
44473658 |
atattcagagtaacatatctagcaatgaaaattcgtcatcgggcatatc |
44473706 |
T |
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