View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14222_low_17 (Length: 322)

Name: NF14222_low_17
Description: NF14222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14222_low_17
NF14222_low_17
[»] chr2 (15 HSPs)
chr2 (26-311)||(24308372-24308656)
chr2 (33-226)||(25504557-25504745)
chr2 (30-154)||(20572363-20572487)
chr2 (39-144)||(2063178-2063285)
chr2 (29-82)||(33788290-33788343)
chr2 (248-305)||(33788498-33788555)
chr2 (29-80)||(13337615-13337666)
chr2 (248-287)||(25504774-25504813)
chr2 (32-80)||(4472308-4472356)
chr2 (38-137)||(16952018-16952118)
chr2 (38-137)||(17022683-17022783)
chr2 (248-288)||(27740150-27740190)
chr2 (258-305)||(22885009-22885056)
chr2 (29-80)||(27740353-27740404)
chr2 (29-118)||(22884779-22884868)
[»] chr5 (4 HSPs)
chr5 (33-226)||(8731162-8731350)
chr5 (33-154)||(24071930-24072052)
chr5 (248-287)||(8731094-8731133)
chr5 (32-61)||(23426684-23426713)
[»] scaffold1613 (1 HSPs)
scaffold1613 (29-214)||(660-841)
[»] chr1 (10 HSPs)
chr1 (29-214)||(38544381-38544562)
chr1 (29-154)||(41126116-41126242)
chr1 (29-80)||(37200507-37200558)
chr1 (36-118)||(27905759-27905840)
chr1 (32-80)||(17033959-17034007)
chr1 (248-284)||(46603560-46603596)
chr1 (169-220)||(38548838-38548889)
chr1 (169-219)||(16577529-16577579)
chr1 (247-288)||(17033763-17033804)
chr1 (249-286)||(38548926-38548963)
[»] chr7 (9 HSPs)
chr7 (30-204)||(23983489-23983659)
chr7 (248-305)||(12546273-12546330)
chr7 (248-303)||(9107321-9107375)
chr7 (29-80)||(9427743-9427794)
chr7 (167-226)||(22567889-22567948)
chr7 (29-80)||(28534169-28534220)
chr7 (167-226)||(28534288-28534347)
chr7 (29-154)||(40292674-40292799)
chr7 (167-226)||(9427879-9427939)
[»] chr4 (6 HSPs)
chr4 (31-144)||(46487580-46487694)
chr4 (248-305)||(12296333-12296390)
chr4 (29-67)||(20632162-20632200)
chr4 (30-67)||(12296552-12296589)
chr4 (56-117)||(49747856-49747917)
chr4 (167-203)||(43373866-43373902)
[»] chr6 (3 HSPs)
chr6 (32-117)||(17278130-17278215)
chr6 (249-290)||(33968482-33968523)
chr6 (167-204)||(16180675-16180712)
[»] chr8 (6 HSPs)
chr8 (36-201)||(25184793-25184953)
chr8 (248-305)||(15906845-15906902)
chr8 (29-117)||(12197740-12197828)
chr8 (29-117)||(12442168-12442256)
chr8 (49-80)||(15907074-15907105)
chr8 (167-203)||(30235891-30235927)
[»] chr3 (11 HSPs)
chr3 (29-119)||(823062-823152)
chr3 (29-80)||(32010152-32010203)
chr3 (33-111)||(25594177-25594255)
chr3 (29-118)||(46358047-46358136)
chr3 (29-80)||(4171109-4171160)
chr3 (162-204)||(16266000-16266041)
chr3 (162-204)||(27399229-27399271)
chr3 (169-203)||(30935153-30935187)
chr3 (29-115)||(40689396-40689482)
chr3 (32-140)||(13017956-13018064)
chr3 (167-203)||(1652650-1652686)


Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 26 - 311
Target Start/End: Original strand, 24308372 - 24308656
Alignment:
Q  26 ttggacgaacagagaccggtgattcagagaatacaaactaaaggcatcgtatatatgagaaacactcaaaagtaaacaccataaaagacaccctacacat 125  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||     
T  24308372 ttggacgaacagagaccggtgatttagagaatacaaactaaaagcatcgtatatatgaggaacactcaaaagtaaacatcataaaagacaccctacacag 24308471  T
Q  126 aacacttagtcaaaccctattttcaacactcatctgatgacgacaacatccaccaaaataaacatcatcccctaaaacaaattctttcatgaaacaacca 225  Q
    || || ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24308472 aatacctagtcaaaccctactttcaacactcatctgatgacgacaacacccaccaaaataaacatcatcacctaaaacaaattctttcatgaaacaacca 24308571  T
Q  226 ccgnnnnnnncgatatacataaccactactcatcccaaaataacacccctctaaataaaacacttcatcctcatcacctatgctac 311  Q
    ||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24308572 cc-aaaaaaacgatatacataaccactactcatcccaaaataacacccctctaaataaaacacttcatcctcatcacctaagctac 24308656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 226
Target Start/End: Original strand, 25504557 - 25504745
Alignment:
Q  33 aacagagaccggtgattcagagaatacaaactaaaggcatcgtatatatgagaaacactcaaaagtaaacaccataaaagacaccctacacataacactt 132  Q
    |||||| |||||||||||||||||||||||| ||||||  ||||||||   ||||||| ||||| ||||||||| ||||||| ||||||||| ||||| |    
T  25504557 aacagaaaccggtgattcagagaatacaaacaaaaggcgccgtatatagacgaaacacccaaaaataaacacca-aaaagaccccctacacacaacacct 25504655  T
Q  133 agtcaaaccctattttcaacactcatctgatgacgacaacatccaccaaaataaacatcatcccctaaaacaaattctttcatgaaacaaccac 226  Q
    |||||||||| |  |||||||| |  ||||||||   |||| |||||||||||||||||| | ||||||||| | ||||||| ||||| |||||    
T  25504656 agtcaaaccccaccttcaacaccc--ctgatgac--aaacacccaccaaaataaacatcaccacctaaaacagagtctttcacgaaacgaccac 25504745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 154
Target Start/End: Complemental strand, 20572487 - 20572363
Alignment:
Q  30 acgaacagagaccggtgattcagagaatacaaactaaaggcatcgtatatatgagaaacactcaaaagtaaacaccataaaagaca-ccctacacataac 128  Q
    |||||||||||||| |||||||||||||| |||| ||| |  ||||||||| | ||||||||||||| |||||||||||||||||| ||||||||| |||    
T  20572487 acgaacagagaccgatgattcagagaatagaaacaaaatgtgtcgtatataggtgaaacactcaaaa-taaacaccataaaagacacccctacacacaac 20572389  T
Q  129 acttagtcaaaccctattttcaacac 154  Q
    ||||| ||| ||||||  ||||||||    
T  20572388 acttactcataccctaccttcaacac 20572363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 39 - 144
Target Start/End: Complemental strand, 2063285 - 2063178
Alignment:
Q  39 gaccggtgattcagagaatacaaactaaaggcatcgtatatatgagaaacactc-aaaagtaaacaccataaaagaca-ccctacacataacacttagtc 136  Q
    ||||||| |||||| |||||||||| |||||   |||||||| | ||||||| | |||| |||||||||||||||||| ||||||||| ||||| |||||    
T  2063285 gaccggtaattcagcgaatacaaacgaaaggtgccgtatataggcgaaacacccgaaaaataaacaccataaaagacatccctacacacaacacctagtc 2063186  T
Q  137 aaacccta 144  Q
    ||||||||    
T  2063185 aaacccta 2063178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 33788290 - 33788343
Alignment:
Q  29 gacgaacagagaccggtgattcagagaatacaaactaaaggcatcgtatatatg 82  Q
    |||||||||||||||||||| | |||||||||||||||||||  ||||||||||    
T  33788290 gacgaacagagaccggtgataccgagaatacaaactaaaggcgccgtatatatg 33788343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 305
Target Start/End: Original strand, 33788498 - 33788555
Alignment:
Q  248 ccactactcatcccaaaataacacccctctaaataaaacacttcatcctcatcaccta 305  Q
    ||||||||| |||||||||||||||||||||||| ||||||  | |||||||||||||    
T  33788498 ccactactcgtcccaaaataacacccctctaaatgaaacaccccgtcctcatcaccta 33788555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 13337666 - 13337615
Alignment:
Q  29 gacgaacagagaccggtgattcagagaatacaaactaaaggcatcgtatata 80  Q
    |||||||||||||||||||  |||||||||||||| |||||| |||||||||    
T  13337666 gacgaacagagaccggtgaaacagagaatacaaacaaaaggcgtcgtatata 13337615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 25504774 - 25504813
Alignment:
Q  248 ccactactcatcccaaaataacacccctctaaataaaaca 287  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  25504774 ccactactcatcccaaaataacacccctctaaatgaaaca 25504813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 4472356 - 4472308
Alignment:
Q  32 gaacagagaccggtgattcagagaatacaaactaaaggcatcgtatata 80  Q
    ||||||||  |||||| |||||||||||||||||||||| |||||||||    
T  4472356 gaacagagttcggtgaatcagagaatacaaactaaaggcgtcgtatata 4472308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 16952018 - 16952118
Alignment:
Q  38 agaccggtgattcagagaatacaaactaaaggcatcgtatatatgagaaacactcaaaagtaaacaccataaaagacac-cctacacataacacttagtc 136  Q
    |||| ||||||| ||||||||||||||| || | ||||||||| |   ||||  ||||| |||||| |||||||||||| |||||||| ||||| |||||    
T  16952018 agacaggtgatttagagaatacaaactatagacgtcgtatataggcagaacatccaaaaataaacatcataaaagacactcctacacacaacacctagtc 16952117  T
Q  137 a 137  Q
    |    
T  16952118 a 16952118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 17022683 - 17022783
Alignment:
Q  38 agaccggtgattcagagaatacaaactaaaggcatcgtatatatgagaaacactcaaaagtaaacaccataaaagacac-cctacacataacacttagtc 136  Q
    |||| ||||||| ||||||||||||||| || | ||||||||| |   ||||  ||||| |||||| |||||||||||| |||||||| ||||| |||||    
T  17022683 agacaggtgatttagagaatacaaactatagacgtcgtatataggcagaacatccaaaaataaacatcataaaagacactcctacacacaacacctagtc 17022782  T
Q  137 a 137  Q
    |    
T  17022783 a 17022783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 27740190 - 27740150
Alignment:
Q  248 ccactactcatcccaaaataacacccctctaaataaaacac 288  Q
    ||||||||||||||| |||||||||||||||||| ||||||    
T  27740190 ccactactcatcccagaataacacccctctaaatgaaacac 27740150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 305
Target Start/End: Original strand, 22885009 - 22885056
Alignment:
Q  258 tcccaaaataacacccctctaaataaaacacttcatcctcatcaccta 305  Q
    |||||||||||||||||||||||| ||||||  | |||||||||||||    
T  22885009 tcccaaaataacacccctctaaatgaaacacaccgtcctcatcaccta 22885056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 27740404 - 27740353
Alignment:
Q  29 gacgaacagagaccggtgattcagagaatacaaactaaaggcatcgtatata 80  Q
    |||||||| ||| || ||||||||| |||||||||||||||| |||||||||    
T  27740404 gacgaacaaagatcgatgattcagataatacaaactaaaggcgtcgtatata 27740353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 118
Target Start/End: Original strand, 22884779 - 22884868
Alignment:
Q  29 gacgaacagagaccggtgattcagagaatacaaactaaaggcatcgtatatatgagaaacactcaaaagtaaacaccataaaagacaccc 118  Q
    |||||||| ||||||  |||  |||||||||||||||||||| ||||||||| | | ||||| | ||| ||||| ||||| || ||||||    
T  22884779 gacgaacaaagaccgacgatatagagaatacaaactaaaggcgtcgtatataggcggaacacccgaaaataaactccatacaaaacaccc 22884868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 226
Target Start/End: Complemental strand, 8731350 - 8731162
Alignment:
Q  33 aacagagaccggtgattcagagaatacaaactaaaggcatcgtatatatgagaaacactcaaaagtaaacaccataaaagacaccctacacataacactt 132  Q
    |||||| |||||||||||||||||||||||| ||||||  ||||||||   ||||||| ||||| ||||||||| ||||||| ||||||||| ||||| |    
T  8731350 aacagaaaccggtgattcagagaatacaaacaaaaggcgccgtatatagacgaaacacccaaaaataaacacca-aaaagaccccctacacacaacacct 8731252  T
Q  133 agtcaaaccctattttcaacactcatctgatgacgacaacatccaccaaaataaacatcatcccctaaaacaaattctttcatgaaacaaccac 226  Q
    |||||||||| |  |||||||| |  ||||||||   |||| |||||||||||||||||| | ||||||||| | ||||||| ||||| |||||    
T  8731251 agtcaaaccccaccttcaacaccc--ctgatgac--aaacacccaccaaaataaacatcaccacctaaaacagagtctttcacgaaacgaccac 8731162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 33 - 154
Target Start/End: Original strand, 24071930 - 24072052
Alignment:
Q  33 aacagagaccggtgattcagagaatacaaactaaaggcatcgtatatatgagaaacactcaaaagtaaacaccataaaagacacc-ctacacataacact 131  Q
    |||| |||||| ||||||||| |||||||||||| |||  |||||||| | | ||||| | ||| |||||| ||||||||||||| |||||| ||||||     
T  24071930 aacaaagaccgatgattcagataatacaaactaagggcgccgtatataggcggaacacccgaaaataaacatcataaaagacacctctacacgtaacacc 24072029  T
Q  132 tagtcaaaccctattttcaacac 154  Q
    |||||||||||||  ||||||||    
T  24072030 tagtcaaaccctaccttcaacac 24072052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 287
Target Start/End: Complemental strand, 8731133 - 8731094
Alignment:
Q  248 ccactactcatcccaaaataacacccctctaaataaaaca 287  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  8731133 ccactactcatcccaaaataacacccctctaaatgaaaca 8731094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 61
Target Start/End: Complemental strand, 23426713 - 23426684
Alignment:
Q  32 gaacagagaccggtgattcagagaatacaa 61  Q
    ||||||||||||||||||||||||||||||    
T  23426713 gaacagagaccggtgattcagagaatacaa 23426684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 214
Target Start/End: Original strand, 660 - 841
Alignment:
Q  29 gacgaacagagaccggtgattcagagaatacaaactaaaggcatcgtatatatgagaaacactcaaaagtaaacaccataaaagaca-ccctacacataa 127  Q
    |||||||| ||| | ||||||||||||||||||||||||| | ||||||||||| | ||||| | ||| |||||||||||||||||| ||||||||| ||    
T  660 gacgaacaaagatccgtgattcagagaatacaaactaaagacgtcgtatatatgtggaacacccgaaaataaacaccataaaagacatccctacacacaa 759  T
Q  128 cacttagtcaaaccctattttcaacactcatctgatgacgacaacatccaccaaaataaacatcatcccctaaaacaaattctttca 214  Q
    ||| ||| |||| | ||  |||||||| |     |||| |||||||| ||||||||||||||||| | ||||||||| | |||||||    
T  760 cacctagccaaatcgtaccttcaacaccc-----atgaggacaacatacaccaaaataaacatcaccacctaaaacagactctttca 841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 214
Target Start/End: Original strand, 38544381 - 38544562
Alignment:
Q  29 gacgaacagagaccggtgattcagagaatacaaactaaaggcatcgtatatatgagaaacactcaaaagtaaacaccataaaagaca-ccctacacataa 127  Q
    |||||||| ||| | ||||||||||||||||||||||||| | ||||||||||| | ||||| | ||| |||||||||||||||||| ||||||||| ||    
T  38544381 gacgaacaaagatccgtgattcagagaatacaaactaaagacgtcgtatatatgtggaacacccgaaaataaacaccataaaagacatccctacacacaa 38544480  T
Q  128 cacttagtcaaaccctattttcaacactcatctgatgacgacaacatccaccaaaataaacatcatcccctaaaacaaattctttca 214  Q
    ||| ||| |||| | ||  |||||||| |     |||| |||||||| ||||||||||||||||| | ||||||||| | |||||||    
T  38544481 cacctagccaaatcgtaccttcaacaccc-----atgaggacaacatacaccaaaataaacatcaccacctaaaacagactctttca 38544562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 154
Target Start/End: Original strand, 41126116 - 41126242
Alignment:
Q  29 gacgaacagagaccggtgattcagagaatacaaactaaaggcatcgtatatatgagaaacactcaaaagtaaacaccataaaagaca-ccctacacataa 127  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| |   ||||| | ||| ||||||  |||||||||| ||||||||| ||    
T  41126116 gacgaacagagaccgatgattcagagaatacaaactaaaggcatcgtatataggtagaacacccgaaaataaacattataaaagacacccctacacacaa 41126215  T
Q  128 cacttagtcaaaccctattttcaacac 154  Q
    ||| ||| || ||||||  ||||||||    
T  41126216 cacatagccataccctaccttcaacac 41126242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 37200558 - 37200507
Alignment:
Q  29 gacgaacagagaccggtgattcagagaatacaaactaaaggcatcgtatata 80  Q
    |||||||||||||||||||| | ||||||||||||||||| |||||||||||    
T  37200558 gacgaacagagaccggtgataccgagaatacaaactaaagacatcgtatata 37200507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 27905840 - 27905759
Alignment:
Q  36 agagaccggtgattcagagaatacaaactaaaggcatcgtatatatgagaaacactcaaaagtaaacaccataaaagacaccc 118  Q
    |||||||||||| ||||||| ||||||||| |||| ||||||||| | | |||||  |||| |||||||||||||||||||||    
T  27905840 agagaccggtgaatcagagactacaaactagaggcgtcgtatataggtggaacac-aaaaaataaacaccataaaagacaccc 27905759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 17034007 - 17033959
Alignment:
Q  32 gaacagagaccggtgattcagagaatacaaactaaaggcatcgtatata 80  Q
    ||||| |||||||||||||||| ||||||||| |||||| |||||||||    
T  17034007 gaacatagaccggtgattcagataatacaaacaaaaggcgtcgtatata 17033959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 46603596 - 46603560
Alignment:
Q  248 ccactactcatcccaaaataacacccctctaaataaa 284  Q
    ||||||||| |||||||||||||||||||||||||||    
T  46603596 ccactactcttcccaaaataacacccctctaaataaa 46603560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 38548838 - 38548889
Alignment:
Q  169 caacatccaccaaaataaacatcatcccctaaaacaaattctttcatgaaac 220  Q
    |||||||||||||||||||||||| | ||||||||| | ||||||| |||||    
T  38548838 caacatccaccaaaataaacatcaccacctaaaacagactctttcacgaaac 38548889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 16577579 - 16577529
Alignment:
Q  169 caacatccaccaaaataaacatcatcccctaaaacaaattctttcatgaaa 219  Q
    ||||| |||||||||||||||||||| ||||||||| | ||||||| ||||    
T  16577579 caacacccaccaaaataaacatcatcacctaaaacagactctttcacgaaa 16577529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 17033804 - 17033763
Alignment:
Q  247 accactactcatcccaaaataacacccctctaaataaaacac 288  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||    
T  17033804 accactactaatcccaaaataacacccctctgaatgaaacac 17033763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 38548926 - 38548963
Alignment:
Q  249 cactactcatcccaaaataacacccctctaaataaaac 286  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  38548926 cactactcatcccaaagtaacacccctctaaatcaaac 38548963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 204
Target Start/End: Complemental strand, 23983659 - 23983489
Alignment:
Q  30 acgaacagagaccggtgattcagagaatacaaactaaaggcatcgtatatatgagaaacactcaaaagtaaacaccataaaagaca-ccctacacataac 128  Q
    ||||||| ||| ||||||||||||||||||||| ||||||||||||||||| | | | ||  ||||| |||||| ||||||||||| ||||||||| |||    
T  23983659 acgaacaaagatcggtgattcagagaatacaaattaaaggcatcgtatataggcggagcatccaaaaataaacatcataaaagacatccctacacacaac 23983560  T
Q  129 acttagtcaaaccctattttcaacactcatctgatgacgacaacatccaccaaaataaacatcatcccctaaaaca 204  Q
    || |||||| ||| ||  |||||||| |     |||| ||||||| ||||||||||||||| || | |||||||||    
T  23983559 acctagtcataccttaccttcaacacac-----atgaggacaacacccaccaaaataaacaccaccacctaaaaca 23983489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 305
Target Start/End: Original strand, 12546273 - 12546330
Alignment:
Q  248 ccactactcatcccaaaataacacccctctaaataaaacacttcatcctcatcaccta 305  Q
    |||||||| ||||||||||||||||||||||||| ||||||| | || ||||||||||    
T  12546273 ccactacttatcccaaaataacacccctctaaatgaaacactccgtcgtcatcaccta 12546330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 303
Target Start/End: Complemental strand, 9107375 - 9107321
Alignment:
Q  248 ccactactcatcccaaaataacacccctctaaataaaacacttcatcctcatcacc 303  Q
    |||||||||||||||||||||| ||||||||||| ||||||  |||||||||||||    
T  9107375 ccactactcatcccaaaataactcccctctaaatgaaacac-ccatcctcatcacc 9107321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 9427743 - 9427794
Alignment:
Q  29 gacgaacagagaccggtgattcagagaatacaaactaaaggcatcgtatata 80  Q
    |||||||||||| |||||||| ||||||||||||||||| ||| ||||||||    
T  9427743 gacgaacagagatcggtgatttagagaatacaaactaaatgcaacgtatata 9427794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 22567889 - 22567948
Alignment:
Q  167 gacaacatccaccaaaataaacatcatcccctaaaacaaattctttcatgaaacaaccac 226  Q
    ||||||||||||||||||| |||||| | ||||||||| | ||||||| |||||||||||    
T  22567889 gacaacatccaccaaaatacacatcaccacctaaaacagactctttcacgaaacaaccac 22567948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 28534169 - 28534220
Alignment:
Q  29 gacgaacagagaccggtgattcagagaatacaaactaaaggcatcgtatata 80  Q
    ||||||||||||||||||||| ||||||||||||  ||||||  ||||||||    
T  28534169 gacgaacagagaccggtgatttagagaatacaaataaaaggcgccgtatata 28534220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 28534288 - 28534347
Alignment:
Q  167 gacaacatccaccaaaataaacatcatcccctaaaacaaattctttcatgaaacaaccac 226  Q
    ||||||| |||||||||||||||||| | ||||||||| | ||||||| ||||| |||||    
T  28534288 gacaacacccaccaaaataaacatcaccacctaaaacagactctttcacgaaacgaccac 28534347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 154
Target Start/End: Original strand, 40292674 - 40292799
Alignment:
Q  29 gacgaacagagaccggtgattcagagaatacaaactaaaggcatcgtatatatgagaaacactcaaaagtaaacaccataaaagacac-cctacacataa 127  Q
    |||||||||||||||||| || ||||| |||||  |||| ||  |||||||||| | |||| || |||||||| ||||||||||| || | ||||||  |    
T  40292674 gacgaacagagaccggtgttttagagactacaagttaaacgcgccgtatatatgcggaaca-tccaaagtaaaaaccataaaagatactcttacacacga 40292772  T
Q  128 cacttagtcaaaccctattttcaacac 154  Q
    | | || ||||||||||| ||||||||    
T  40292773 cccctaatcaaaccctatcttcaacac 40292799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 9427879 - 9427939
Alignment:
Q  167 gacaacatccaccaaaataaacatcatcccctaaaacaaattctttcatgaa-acaaccac 226  Q
    ||||||| | ||||||||||||||||   ||||||||||||||||||| ||| ||||||||    
T  9427879 gacaacacctaccaaaataaacatcactacctaaaacaaattctttcacgaagacaaccac 9427939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 144
Target Start/End: Complemental strand, 46487694 - 46487580
Alignment:
Q  31 cgaacagagaccggtgattcagagaatacaaactaaaggcatcgtatatatgagaaacactcaaaagtaaacaccataaaagaca-ccctacacataaca 129  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| | | ||||  | ||| ||||||| ||||| | || ||||||||| ||||    
T  46487694 cgaacagagaccggtgatttagagaatacaaactaaaggcatcgtatataggcggaacatccgaaaataaacacaataaatggcacccctacacacaaca 46487595  T
Q  130 cttagtcaaacccta 144  Q
    | ||| |||||||||    
T  46487594 cctagacaaacccta 46487580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 12296390 - 12296333
Alignment:
Q  248 ccactactcatcccaaaataacacccctctaaataaaacacttcatcctcatcaccta 305  Q
    |||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||    
T  12296390 ccactactcatcccaaaataacacccctctaaatgaaacactccgtcctcatcaccta 12296333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 20632162 - 20632200
Alignment:
Q  29 gacgaacagagaccggtgattcagagaatacaaactaaa 67  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  20632162 gacgaactgagaccggtgattcagagaatacaaactaaa 20632200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 12296589 - 12296552
Alignment:
Q  30 acgaacagagaccggtgattcagagaatacaaactaaa 67  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  12296589 acgaatagagaccgatgattcagagaatacaaactaaa 12296552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 49747917 - 49747856
Alignment:
Q  56 atacaaactaaaggcatcgtatatatgagaaacactcaaaagtaaacaccataaaagacacc 117  Q
    |||||||| |||| ||||||||||||| | ||||  ||||| |||||||||||||| |||||    
T  49747917 atacaaacaaaagacatcgtatatatgcggaacatccaaaaataaacaccataaaaaacacc 49747856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 43373866 - 43373902
Alignment:
Q  167 gacaacatccaccaaaataaacatcatcccctaaaac 203  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  43373866 gacaacacccaccaaaataaacatcaccccctaaaac 43373902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 17278130 - 17278215
Alignment:
Q  32 gaacagagaccggtgattcagagaatacaaactaaaggcatcgtatatatgagaaacactcaaaagtaaacaccataaaagacacc 117  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||| | | ||||| | ||| |||||| |||||||||||||    
T  17278130 gaacagagaccggtgattcagagaatacaatctaaaggcgtcgtatataggcggaacacccgaaaataaacatcataaaagacacc 17278215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 290
Target Start/End: Original strand, 33968482 - 33968523
Alignment:
Q  249 cactactcatcccaaaataacacccctctaaataaaacactt 290  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  33968482 cactactcatcccaaaataacacccctctaaatgaaacactt 33968523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 16180675 - 16180712
Alignment:
Q  167 gacaacatccaccaaaataaacatcatcccctaaaaca 204  Q
    |||||||||||||||||||||||||| | |||||||||    
T  16180675 gacaacatccaccaaaataaacatcaccacctaaaaca 16180712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 36 - 201
Target Start/End: Original strand, 25184793 - 25184953
Alignment:
Q  36 agagaccggtgattcagagaatacaaactaaaggcatcgtatatatgagaaacactcaaaagtaaacaccataaaagacaccc-tacacataacacttag 134  Q
    |||||||||||||||||||| |||||||||||  | ||||||||| | | ||||| | || ||||||||||||||||||| || |||||| || || |||    
T  25184793 agagaccggtgattcagagagtacaaactaaaaacgtcgtatataggtggaacacccgaa-gtaaacaccataaaagacatccatacacacaatacctag 25184891  T
Q  135 tcaaaccctattttcaacactcatctgatgacgacaacatccaccaaaataaacatcatcccctaaa 201  Q
     ||| |||||  ||||||||||||     || ||||||| |||||||||||||||||| | ||||||    
T  25184892 ccaagccctaccttcaacactcat-----gaggacaacacccaccaaaataaacatcaccacctaaa 25184953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 15906902 - 15906845
Alignment:
Q  248 ccactactcatcccaaaataacacccctctaaataaaacacttcatcctcatcaccta 305  Q
    ||||||||||||||||||||||||| |||||||||||||||    |||||||||||||    
T  15906902 ccactactcatcccaaaataacacctctctaaataaaacacactgtcctcatcaccta 15906845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 12197740 - 12197828
Alignment:
Q  29 gacgaacagagaccggtgattcagagaatacaaactaaaggcatcgtatatatgagaaacactcaaaagtaaacaccataaaagacacc 117  Q
    |||||| ||||| |||||| |||||||||||||||||||||| |||| |||| | | |||||   ||| |||||||| |||||||||||    
T  12197740 gacgaatagagatcggtgaatcagagaatacaaactaaaggcgtcgtctataggcggaacacgggaaaataaacaccctaaaagacacc 12197828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 12442168 - 12442256
Alignment:
Q  29 gacgaacagagaccggtgattcagagaatacaaactaaaggcatcgtatatatgagaaacactcaaaagtaaacaccataaaagacacc 117  Q
    |||||| ||||| |||||| |||||||||||||||||||||| |||| |||| | | |||||   ||| |||||||| |||||||||||    
T  12442168 gacgaatagagatcggtgaatcagagaatacaaactaaaggcgtcgtctataggcggaacacgggaaaataaacaccctaaaagacacc 12442256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 80
Target Start/End: Complemental strand, 15907105 - 15907074
Alignment:
Q  49 tcagagaatacaaactaaaggcatcgtatata 80  Q
    ||||||||||||||||||||||||||||||||    
T  15907105 tcagagaatacaaactaaaggcatcgtatata 15907074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 30235891 - 30235927
Alignment:
Q  167 gacaacatccaccaaaataaacatcatcccctaaaac 203  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  30235891 gacaacacccaccaaaataaacatcaccccctaaaac 30235927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 119
Target Start/End: Original strand, 823062 - 823152
Alignment:
Q  29 gacgaacagagaccggtgattcagagaatacaaactaaaggcatcgtatatatgagaaacactcaaaagtaaacaccat-aaaagacaccct 119  Q
    ||||||||||||||||||||||||||| |||||  ||||||| ||||||||| | | ||||| | ||| |||||||||| ||||||||||||    
T  823062 gacgaacagagaccggtgattcagagactacaagttaaaggcgtcgtatataaggggaacac-ccaaattaaacaccataaaaagacaccct 823152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 32010203 - 32010152
Alignment:
Q  29 gacgaacagagaccggtgattcagagaatacaaactaaaggcatcgtatata 80  Q
    |||||||||||| |||||||||||||||||||| ||||| || |||||||||    
T  32010203 gacgaacagagatcggtgattcagagaatacaacctaaaagcgtcgtatata 32010152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 25594177 - 25594255
Alignment:
Q  33 aacagagaccggtgattcagagaatacaaactaaaggcatcgtatatatgagaaacactcaaaagtaaacaccataaaa 111  Q
    |||||||| ||||||||||||||||| |||  ||| || ||||||||| | | ||||| | ||||||||||||||||||    
T  25594177 aacagagatcggtgattcagagaataaaaataaaatgcgtcgtatataggcggaacacccgaaagtaaacaccataaaa 25594255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 118
Target Start/End: Original strand, 46358047 - 46358136
Alignment:
Q  29 gacgaacagagaccggtgattcagagaatacaaactaaaggcatcgtatatatgagaaacactcaaaagtaaacaccataaaagacaccc 118  Q
    |||||||||||||| | |||||||| |||||||||||||| |   ||||||| | |||||||   ||| |||||||| ||||||||||||    
T  46358047 gacgaacagagaccagagattcagaaaatacaaactaaagacgctgtatataggcgaaacacctgaaaataaacaccttaaaagacaccc 46358136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 4171160 - 4171109
Alignment:
Q  29 gacgaacagagaccggtgattcagagaatacaaactaaaggcatcgtatata 80  Q
    |||||||||||||||||||  | |||||||||||| |||||| |||||||||    
T  4171160 gacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatata 4171109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 16266041 - 16266000
Alignment:
Q  162 atgacgacaacatccaccaaaataaacatcatcccctaaaaca 204  Q
    |||| |||||||||||||||||||||||||| |||||||||||    
T  16266041 atgaggacaacatccaccaaaataaacatca-cccctaaaaca 16266000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 27399271 - 27399229
Alignment:
Q  162 atgacgacaacatccaccaaaataaacatcatcccctaaaaca 204  Q
    |||| ||||||| |||||||||||||||||||| |||||||||    
T  27399271 atgaggacaacacccaccaaaataaacatcatcacctaaaaca 27399229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 203
Target Start/End: Original strand, 30935153 - 30935187
Alignment:
Q  169 caacatccaccaaaataaacatcatcccctaaaac 203  Q
    |||||||||||||||||||||||| ||||||||||    
T  30935153 caacatccaccaaaataaacatcaccccctaaaac 30935187  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 115
Target Start/End: Original strand, 40689396 - 40689482
Alignment:
Q  29 gacgaacagagaccggtgattcagagaatacaaactaaaggcatcgtatatatgagaaacactcaaaagtaaacaccataaaagaca 115  Q
    |||| ||||||||||||| || ||||| ||||||||||| |  | ||||||| | ||||||| ||||| |||| | |||||||||||    
T  40689396 gacggacagagaccggtggttaagagagtacaaactaaaagtgttgtatataagcgaaacacccaaaaataaatatcataaaagaca 40689482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 13017956 - 13018064
Alignment:
Q  32 gaacagagaccggtgattcagagaatacaaactaaaggcatcgtatatatgagaaacactcaaaagtaaacaccataaaagaca-ccctacacataacac 130  Q
    ||||| |||||  ||||||||||| |||||| ||||||| | |||||||   |||||| || ||| |||||| ||||||||||| ||||||||||| |||    
T  13017956 gaacaaagaccaatgattcagagactacaaattaaaggcgttgtatatagacgaaaca-tccaaaataaacatcataaaagacacccctacacataccac 13018054  T
Q  131 ttagtcaaac 140  Q
     || ||||||    
T  13018055 ctaatcaaac 13018064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 1652650 - 1652686
Alignment:
Q  167 gacaacatccaccaaaataaacatcatcccctaaaac 203  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  1652650 gacaacacccaccaaaataaacatcaccccctaaaac 1652686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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