View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14222_low_18 (Length: 292)
Name: NF14222_low_18
Description: NF14222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14222_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 61 - 289
Target Start/End: Original strand, 36857171 - 36857397
Alignment:
| Q |
61 |
tatctacccaaacactct--aggatttcaacaccatttatagaacaaacaagacggaatttttagccggttcaaactccattgccacgagagaaccttga |
158 |
Q |
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| T |
36857171 |
tatctacccaaacactctctaggattccaacaccatttatagaacaaacaagacggaatttttagccggttcaaactccattgccacgagagaaccttga |
36857270 |
T |
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| Q |
159 |
cttcctccaccatttcatcaacctctacttgaccttattgttaattaaagatccagtcatttctcgacttccaaataacccaaattgccgaaagccaaat |
258 |
Q |
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| T |
36857271 |
cttcctccaccatttcatcaacctctacttgaccttattg----ttaaagatccagtcatttctcgacttccaaataacccaaattgccgaaagccaaat |
36857366 |
T |
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| Q |
259 |
taaccaagcccctctcttcaatttcttcaaa |
289 |
Q |
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| T |
36857367 |
taaccaagcccctctcttcaatttcttcaaa |
36857397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 203 - 292
Target Start/End: Original strand, 27895149 - 27895238
Alignment:
| Q |
203 |
ttaaagatccagtcatttctcgacttccaaataacccaaattgccgaaagccaaattaaccaagcccctctcttcaatttcttcaaacgc |
292 |
Q |
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| T |
27895149 |
ttaaagatcccgtcatttctcgattttcaaataacccaaattaccgaatgccaaattaaccaaacccctttcttcaatttccttaaacgc |
27895238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 286
Target Start/End: Complemental strand, 7898402 - 7898325
Alignment:
| Q |
209 |
atccagtcatttctcgacttccaaataacccaaattgccgaaagccaaattaaccaagcccctctcttcaatttcttc |
286 |
Q |
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| T |
7898402 |
atccggtcatttctagaattccaaattacccaaataaccgaatgccaaattagccaagcccctctcctccatttcttc |
7898325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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