View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14222_low_3 (Length: 597)
Name: NF14222_low_3
Description: NF14222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14222_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 478; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 18 - 583
Target Start/End: Original strand, 25613444 - 25614009
Alignment:
| Q |
18 |
cagccacttcaatagcttctgtcgcatggtgaatgcattcatgctctctcctcgagaacaaaaccatcccatcaaaacgttttacataaattgtcgcttt |
117 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||| ||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
25613444 |
cagccacttcaatagcttctgtcgtatggtgaatgcagtcatgctctctcctcgggaaccaaatcatcccatcaaaacgttttacataaactgtcgcttt |
25613543 |
T |
|
| Q |
118 |
ggattttgtaagaatggtagccgcattttctctgcatgggtagaagccgcaaaacaacgcagtgttgtggaatttcatctctccagtagtatcaccttga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || ||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
25613544 |
ggattttgtaagaatggtagccgcattttctctgcatgggtagaagctgcaaatcagcgtagtgttgaggaatttcatctctccaatagtatcaccttga |
25613643 |
T |
|
| Q |
218 |
agttgaatcctacaattttcacgtcgaaaaccctagttgttttgaaacttgagagattagtagttaaagctgaaaatttatgtgttgatcttccatctct |
317 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25613644 |
agttgaatcctacaattttcacctccaaaaccctagttgttctgaaacttgagagattagtagttaaagctgaaaatttgtgtgttgatcttccatctct |
25613743 |
T |
|
| Q |
318 |
caaaatcctacctttgaaagaaatctgttttacatacaataaagatatcatgaaacttcttaatggttgtccagttctagaagatttacatactttttgt |
417 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
25613744 |
caaaatcctatctttgaaagaaatctgttttacatacaataaagatatcatgaaacttcttaatggttgtccagttctagaagatttacatacttttggt |
25613843 |
T |
|
| Q |
418 |
cgtgaatatacgagatttgtagaagacaatgcagcggaagggtttaaacccttgtccaagttggtcagagcagatatcagtttatatgatgttccctttc |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
25613844 |
cgtgaatatacgagatttgtagaagacaatgcagcggaagggtttaaacccttgtccaagttggtcagagcagatatcagttcatatgatgttccctttc |
25613943 |
T |
|
| Q |
518 |
atgcaattaaaaatgttgagtttcttagcatagacgaggcaccagaaaatattttcaaaaccatcc |
583 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||| |
|
|
| T |
25613944 |
atgcaattaaaaatgttgagtttcttagcatacatgtggcaccagaaaatattttcaaaaccatcc |
25614009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 150 - 581
Target Start/End: Original strand, 31261730 - 31262149
Alignment:
| Q |
150 |
tgcatgggtagaagccgcaaaacaacgcagtgttgtggaatttcatctctcca------gtagtatcaccttgaagttgaatcctacaattttcacgtcg |
243 |
Q |
| |
|
|||||||||||||||||| ||||| ||| | |||| ||||||| ||||||||| || |||||||||||| |||||||| |||||||| || || |
|
|
| T |
31261730 |
tgcatgggtagaagccgctaaacagcgccgagttgaggaatttaatctctccatcatcagtggtatcaccttgatattgaatcccacaattttaacctcc |
31261829 |
T |
|
| Q |
244 |
aaaaccctagttgttttgaaacttgagagattagtagttaaagctgaaaatttatgtgttgatcttccatctctcaaaatcctacctttgaaagaaatct |
343 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
31261830 |
caaaccctagttattctgaaacttgagagattagtagttaaagctgaaaatttgtgtgttgatcttccatctctcaaaatcctacatttggtagaaatct |
31261929 |
T |
|
| Q |
344 |
gttttacatacaataaagatatcatgaaacttcttaatggttgtccagttctagaagatttacatactttttgtcgtgaatatacgagatttgtagaaga |
443 |
Q |
| |
|
|||||| |||||| || ||| ||||||||||||||||||| ||||| |||||||||||||||| | |||||| ||| |||| | |
|
|
| T |
31261930 |
gttttaaatacaagaatgatttcatgaaacttcttaatggatgtcctgttctagaagatttac------------------acacgagagttgaagaaaa |
31262011 |
T |
|
| Q |
444 |
caatgcagcggaagggtttaaacccttgtccaagttggtcagagcagatatcagtttatatgatgttccctttcatgcaattaaaaatgttgagtttctt |
543 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||| ||| ||||||||||| |
|
|
| T |
31262012 |
taatgcagcggaagggtttaaacccttgtccaagttggtcagagcagatatcaattcatatgatgttccctttgatgcaattaataatcttgagtttctt |
31262111 |
T |
|
| Q |
544 |
agcatagacgaggcaccagaaaatattttcaaaaccat |
581 |
Q |
| |
|
||||| | |||||||||||||| |||||||||||| |
|
|
| T |
31262112 |
tgcataagagtggcaccagaaaatactttcaaaaccat |
31262149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 244 - 322
Target Start/End: Complemental strand, 23940856 - 23940778
Alignment:
| Q |
244 |
aaaaccctagttgttttgaaacttgagagattagtagttaaagctgaaaatttatgtgttgatcttccatctctcaaaa |
322 |
Q |
| |
|
||||||||||||| | | ||||||||||||||| |||| || |||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
23940856 |
aaaaccctagttgatctcaaacttgagagattaaaagttgaaactgataatttgtgtgttgatcttccatctctcaaaa |
23940778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 328
Target Start/End: Complemental strand, 24005697 - 24005601
Alignment:
| Q |
232 |
attttcacgtcgaaaaccctagttgttttgaaacttgagagattagtagttaaagctgaaaatttatgtgttgatcttccatctctcaaaatcctac |
328 |
Q |
| |
|
|||||||| || | ||||||||||||| | ||||||| ||| ||| |||| ||| ||||||||| ||||||||||||||| |||||||| ||||| |
|
|
| T |
24005697 |
attttcacctccagaaccctagttgttgtcaaacttgcgagcttaaaagttgaaggtgaaaatttgtgtgttgatcttccaaatctcaaaaccctac |
24005601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 300 - 336
Target Start/End: Original strand, 24112215 - 24112251
Alignment:
| Q |
300 |
tgttgatcttccatctctcaaaatcctacctttgaaa |
336 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24112215 |
tgttgatcttccatctctcaaaatcctaggtttgaaa |
24112251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 220 - 322
Target Start/End: Original strand, 15498038 - 15498140
Alignment:
| Q |
220 |
ttgaatcctacaattttcacgtcgaaaaccctagttgttttgaaacttgagagattagtagttaaagctgaaaatttatgtgttgatcttccatctctca |
319 |
Q |
| |
|
|||||||| ||||||||||| || | |||||||||||| | |||| || ||| ||| | || ||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
15498038 |
ttgaatcccacaattttcacctctcataccctagttgttctcaaacatgcgaggttacaacttgaagctgaaaatttgtgtgttcatcttccatctctca |
15498137 |
T |
|
| Q |
320 |
aaa |
322 |
Q |
| |
|
||| |
|
|
| T |
15498138 |
aaa |
15498140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 269
Target Start/End: Complemental strand, 28720838 - 28720789
Alignment:
| Q |
220 |
ttgaatcctacaattttcacgtcgaaaaccctagttgttttgaaacttga |
269 |
Q |
| |
|
|||||||| |||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
28720838 |
ttgaatcccgcaattttcacctctcaaaccctagttgttttgaaacttga |
28720789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University