View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14222_low_7 (Length: 449)
Name: NF14222_low_7
Description: NF14222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14222_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 15 - 434
Target Start/End: Complemental strand, 4928311 - 4927892
Alignment:
| Q |
15 |
gtattgactccgatttagaaagcttcccttgtacggatgatccaaattgcgagagttttggtgccatattgttatccaaaagaatgttctctggctttac |
114 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
4928311 |
gtattgactccgatttagaaagcttcccttgtaaggataatccaaattgcgagagttttggtgccatattgttatccaaaagaatgttctgtggaattac |
4928212 |
T |
|
| Q |
115 |
gtcacggtggaaaatcggacgctttgttccagtgtgaagatagtgtagtccttttgcagctccaatgcatatttctagccnnnnnnnccacgagagtgat |
214 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
4928211 |
gtcacggtggaaaatcggacgctttgttccagtgtgaagatagtgtagtccttttgcagctccaatgcatatttcaagccttttcttccacgagagtgat |
4928112 |
T |
|
| Q |
215 |
tccatatcctttgaacctaagtgatcatggagagtgccattgaccatttcatcatttttatacacgagaatttcctcannnnnnnggtcacaaaatccta |
314 |
Q |
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||||||||| | |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| || | ||||||||||||||| |
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| T |
4928111 |
tccatatccctcgaacctaagtgatcttggagagtgccattgaccatttcatcttttttatacacgagaattttcttatttttttggtcacaaaatccta |
4928012 |
T |
|
| Q |
315 |
tcaaagatatcaaatttgggtgataaagctggcaatggagttcaatttcattcttgaaatgccgttccatgaatgtatttgttatccgcaacaatgctat |
414 |
Q |
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| ||||||||||||||||||||| |||||||||| || |||| ||||||||||||||| || || | ||| || ||||||||||||||||||||| |
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| T |
4928011 |
taaaagatatcaaatttgggtgacaaagctggcagaggtgttctatttcattcttgaaaccttgtcccctaaatacatctgttatccgcaacaatgctat |
4927912 |
T |
|
| Q |
415 |
tggataatcattttcaccat |
434 |
Q |
| |
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|||||||||||||||||||| |
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| T |
4927911 |
tggataatcattttcaccat |
4927892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 434
Target Start/End: Complemental strand, 4922067 - 4921650
Alignment:
| Q |
18 |
ttgactccgatttagaaagcttcccttgtacggatgatccaaattgcgagagttttggtgccatattgttatccaaaagaatgttctctggctttacgtc |
117 |
Q |
| |
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||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| |
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| T |
4922067 |
ttgactccgattttgaaagcttcccttgtaaggataatccaaattgcgagagttttggtgccatattgttatccaaaagaatgctgtaaggctttacgtc |
4921968 |
T |
|
| Q |
118 |
acggtggaaaatcggacgctttgttccagtgtgaagatagtgtagtccttttgcagctccaatgcatatttctagcc-nnnnnnnccacgagagtgattc |
216 |
Q |
| |
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||||||||||||||| ||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||| |||| ||| |||||||| | |
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| T |
4921967 |
acggtggaaaatcgggcgctttgctccagtgtgaaggtagtgcagtccttttgcagctccaatgcatatttcaagccttttttttccaagagagtgaaac |
4921868 |
T |
|
| Q |
217 |
catatcctttgaacctaagtgatcatggagagtgccattgaccatttcatcatttttatacacgagaatttcctcannnnnnnggtcacaaaatcctatc |
316 |
Q |
| |
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| | ||| |||||| |||||||||| |||||| |||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
4921867 |
cgtgtcccttgaacataagtgatcacggagagagccattgaccatttcatcttttttatacacgagaattttctcatttttttggtcacaaaatcctatc |
4921768 |
T |
|
| Q |
317 |
aaagatatcaaatttgggtgataaagctggcaatggagttcaatttcattcttgaaatgccgttccatgaatgtatttgttatccgcaacaatgctattg |
416 |
Q |
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||||||||||||||||| ||| ||| |||||| ||||||||||||||||||||||| || |||| |||||| | ||||||||||||||||||||| |
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| T |
4921767 |
aaagatatcaaatttggatgacaaatctggcagtggagttcaatttcattcttgaacgtttctttcatgtatgtatcttttatccgcaacaatgctattg |
4921668 |
T |
|
| Q |
417 |
gataatcattttcaccat |
434 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
4921667 |
gataatcattttcaccat |
4921650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 29 - 434
Target Start/End: Original strand, 4907919 - 4908318
Alignment:
| Q |
29 |
ttagaaagcttcccttgtacggatgatccaaattgcgagagttttggtgccatattgttatccaaaagaatgttctctggctttacgtcacggtggaaaa |
128 |
Q |
| |
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|||| |||||||||||||| ||| |||||| ||||||||||||||| ||||||| ||||| ||||||||| | | ||||||| ||||| ||| |||| |
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| T |
4907919 |
ttaggaagcttcccttgtaaggaaaatccaagatgcgagagttttggtaccatattcttatctaaaagaatggtttgaggctttatgtcacagtgaaaaa |
4908018 |
T |
|
| Q |
129 |
tcggacgctttgttccagtgtgaagatagtgtagtccttttgcagctccaatgcatatttctagccnnnnnnnccacgagagtgattccatatcctttga |
228 |
Q |
| |
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| | ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| || | ||||||||||||| | | |
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| T |
4908019 |
ttgcgcgctttgctccagtgtgaaggtagtgtagtccttttgcagctccaatgcatatttctagccttttcttccatgacaatgattccatatccctcaa |
4908118 |
T |
|
| Q |
229 |
acctaagtgatcatggagagtgccattgaccatttcatcatttttatacacgagaatttcctcannnnnnnggtcacaaaatcctatcaaagatatcaaa |
328 |
Q |
| |
|
| || |||||||| ||||| ||||||| ||| | || |||||| ||||||| |||| ||||||| |||||||| ||||| ||||| |
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| T |
4908119 |
aagtaggtgatcatagagagagccattggacatgtactc------atacacaagaattttctcatacttgtggtcacagaatcctataaaagacgtcaaa |
4908212 |
T |
|
| Q |
329 |
tttgggtgataaagctggcaatggagttcaatttcattcttgaaatgccgttccatgaatgtatttgttatccgcaacaatgctattggataatcatttt |
428 |
Q |
| |
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|||||||||| ||||||||| | |||||||||||| |||||||| | || ||| | ||| ||| | | ||||| || |||||||||||||||| ||| |
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| T |
4908213 |
tttgggtgatgaagctggcagttgagttcaatttccttcttgaacttccattcattaaatatatgtatcatccgtttcactgctattggataatcagttt |
4908312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 29 - 242
Target Start/End: Complemental strand, 5822334 - 5822121
Alignment:
| Q |
29 |
ttagaaagcttcccttgtacggatgatccaaattgcgagagttttggtgccatattgttatccaaaagaatgttctctggctttacgtcacggtggaaaa |
128 |
Q |
| |
|
||||||||||||||||||| || |||||| || |||||||||||| ||||||| ||||| ||||||||| | | || |||| ||||| || |||| |
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| T |
5822334 |
ttagaaagcttcccttgtaaagaaaatccaagatgtgagagttttggtaccatattcttatctaaaagaatggtttgaggttttatgtcacaatgaaaaa |
5822235 |
T |
|
| Q |
129 |
tcggacgctttgttccagtgtgaagatagtgtagtccttttgcagctccaatgcatatttctagccnnnnnnnccacgagagtgattccatatcctttga |
228 |
Q |
| |
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|| |||||||||||||||||||| ||||||||||| || |||||||| ||||||||||| |||| ||| |||||||||||||||| | |||| |
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| T |
5822234 |
ccgtgcgctttgttccagtgtgaaggtagtgtagtcccttagcagctccgatgcatatttcaagccttttcttccatgagagtgattccatattccttga |
5822135 |
T |
|
| Q |
229 |
acctaagtgatcat |
242 |
Q |
| |
|
|| ||| ||||||| |
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|
| T |
5822134 |
acgtaactgatcat |
5822121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 26 - 257
Target Start/End: Original strand, 4903992 - 4904223
Alignment:
| Q |
26 |
gatttagaaagcttcccttgtacggatgatccaaattgcgagagttttggtgccatattgttatccaaaagaatgttctctggctttacgtcacggtgga |
125 |
Q |
| |
|
||||||||| ||||| |||| | ||| ||||| ||| | |||||||||| |||| |||||||| |||||||| | | ||||||| |||| ||| | |
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| T |
4903992 |
gatttagaacgcttctcttgcaaggaaattccaagttgtgcgagttttggtaccattttgttatctaaaagaattgtttgaggctttatatcacagtgaa |
4904091 |
T |
|
| Q |
126 |
aaatcggacgctttgttccagtgtgaagatagtgtagtccttttgcagctccaatgcatatttctagccnnnnnnnccacgagagtgattccatatcctt |
225 |
Q |
| |
|
|||| | ||||||| ||| ||||||||||||||||||||| ||||| |||||||||||||||| |||| ||| ||||||||||| | |||| | |
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|
| T |
4904092 |
aaattgcgcgctttgctccggtgtgaagatagtgtagtcctcttgcaactccaatgcatatttcaagccttttcttccatgagagtgattctagatccct |
4904191 |
T |
|
| Q |
226 |
tgaacctaagtgatcatggagagtgccattga |
257 |
Q |
| |
|
||||| ||||||||||| ||||| ||||||| |
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|
| T |
4904192 |
tgaacataagtgatcatagagagaaccattga |
4904223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 372
Target Start/End: Original strand, 4904268 - 4904332
Alignment:
| Q |
308 |
aatcctatcaaagatatcaaatttgggtgataaagctggcaatggagttcaatttcattcttgaa |
372 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| ||| |||| |||||||||||| | |||||||| |
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|
| T |
4904268 |
aatcctattaaagatatcaaattagggtgatgaagttggctgtggagttcaattaccttcttgaa |
4904332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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