View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14222_low_8 (Length: 447)
Name: NF14222_low_8
Description: NF14222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14222_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 95 - 434
Target Start/End: Complemental strand, 10361544 - 10361212
Alignment:
| Q |
95 |
ccactaacacattcttatttattatatattttaatcattttactgttcaaataatttcgtactataagaatattttagtaaataaaatacaaa-ggcacc |
193 |
Q |
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| T |
10361544 |
ccactaacacattcttatttattatatattttaatcattttactgttcaaataatttcgtactataaggatattttagtaaataaaatacaaagggcacc |
10361445 |
T |
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| Q |
194 |
taatttgagaccaagaaagtagtaatattctaaagttattcatcaaattgcaaaattttgaggaaatttaaaagattatagttagatgattagatctaca |
293 |
Q |
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| T |
10361444 |
taatttgagaccaagaaagtagtaatattctaaagttattcatcaaattgcaaaattttaaggaaatttaaaagattatag--------ttagatctaca |
10361353 |
T |
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| Q |
294 |
attgtactccgtccgttttaaaaattatgaatcgctttatttttcatattaagcttacctaaattagttattctaattttatgtcggctttaatacttaa |
393 |
Q |
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| T |
10361352 |
attgtactccgtccgttttaaaaattatgaatcgctttatttttcatattaagcttacctaaattagttattctaattttatgtcggctctaatacttaa |
10361253 |
T |
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| Q |
394 |
cttcatgtgcacatttgttcctaattacattatgaaaagaa |
434 |
Q |
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| T |
10361252 |
cttcatgtgcacatttgttcctaattacattatgaaaagaa |
10361212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 434
Target Start/End: Complemental strand, 10351816 - 10351728
Alignment:
| Q |
350 |
acctaaattagttattctaattttatgtcggct----ttaatacttaacttcatgtgcacatttgttcctaattac-attatgaaaagaa |
434 |
Q |
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| T |
10351816 |
acctaaattaattattctaattttatgttggctctcattcatacttatcttcatgtgcac-cttgtacttaattacaattatgaaaagaa |
10351728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 10363457 - 10363409
Alignment:
| Q |
214 |
agtaatattctaaagttattcatcaaattgcaaaattttgaggaaattt |
262 |
Q |
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| T |
10363457 |
agtaatattcaaaagttattcatgaaattgtaaaattttaaggagattt |
10363409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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