View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14223_high_13 (Length: 308)

Name: NF14223_high_13
Description: NF14223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14223_high_13
NF14223_high_13
[»] chr4 (9 HSPs)
chr4 (1-238)||(27256089-27256329)
chr4 (1-233)||(21200058-21200291)
chr4 (240-291)||(7745125-7745176)
chr4 (237-291)||(10442802-10442856)
chr4 (237-291)||(24128237-24128291)
chr4 (237-291)||(47290064-47290118)
chr4 (237-291)||(50156591-50156645)
chr4 (234-291)||(22199256-22199313)
chr4 (238-291)||(31078832-31078885)
[»] chr3 (10 HSPs)
chr3 (235-291)||(3574540-3574596)
chr3 (237-291)||(2754715-2754769)
chr3 (237-291)||(11347266-11347320)
chr3 (238-291)||(42297352-42297405)
chr3 (239-291)||(37217066-37217118)
chr3 (237-291)||(3137427-3137481)
chr3 (239-289)||(3456064-3456114)
chr3 (237-291)||(37522051-37522105)
chr3 (234-263)||(47402637-47402666)
chr3 (239-289)||(48160905-48160955)
[»] chr6 (6 HSPs)
chr6 (236-291)||(6127272-6127327)
chr6 (237-291)||(23291097-23291151)
chr6 (239-291)||(17705478-17705530)
chr6 (237-291)||(28675146-28675200)
chr6 (238-291)||(33695340-33695393)
chr6 (238-291)||(33696695-33696748)
[»] scaffold0204 (1 HSPs)
scaffold0204 (237-291)||(4394-4448)
[»] chr5 (6 HSPs)
chr5 (237-291)||(2477634-2477688)
chr5 (237-291)||(4892200-4892254)
chr5 (239-291)||(11361144-11361196)
chr5 (239-291)||(25398238-25398290)
chr5 (239-291)||(33584342-33584394)
chr5 (236-291)||(6043524-6043579)
[»] chr1 (5 HSPs)
chr1 (237-291)||(18404440-18404494)
chr1 (237-291)||(25463674-25463728)
chr1 (230-289)||(36966723-36966782)
chr1 (236-289)||(19015401-19015454)
chr1 (238-291)||(41876455-41876508)
[»] chr2 (6 HSPs)
chr2 (238-291)||(35160756-35160809)
chr2 (235-291)||(23268075-23268131)
chr2 (239-291)||(33380207-33380259)
chr2 (240-291)||(10661888-10661939)
chr2 (234-263)||(43330907-43330936)
chr2 (238-291)||(7475521-7475574)
[»] chr8 (9 HSPs)
chr8 (239-291)||(32393858-32393910)
chr8 (239-291)||(35353041-35353093)
chr8 (237-291)||(1645978-1646032)
chr8 (237-291)||(6108246-6108300)
chr8 (237-291)||(17841863-17841917)
chr8 (237-291)||(32064743-32064797)
chr8 (237-291)||(40780142-40780196)
chr8 (236-289)||(15187557-15187610)
chr8 (234-291)||(42755055-42755112)
[»] chr7 (8 HSPs)
chr7 (239-291)||(3961979-3962031)
chr7 (239-291)||(24394972-24395024)
chr7 (239-291)||(25167863-25167915)
chr7 (239-291)||(34482835-34482887)
chr7 (235-291)||(45637708-45637764)
chr7 (236-291)||(37477093-37477148)
chr7 (237-291)||(15329271-15329325)
chr7 (238-291)||(15577863-15577916)
[»] scaffold0471 (1 HSPs)
scaffold0471 (237-291)||(12840-12894)


Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 27256089 - 27256329
Alignment:
Q  1 tacacagactaagaact---taccagacaaatggagccaccttcgaaaattggtaacaatgtcttttggaatgnnnnnnnnnnnnngaaactttgaaaga 97  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||||             ||||||||||||||    
T  27256089 tacacagactaagaactaattaccagacaaatggagccaccttcgaaaattgctaacaatgtcttttggaatgttttttcttttttgaaactttgaaaga 27256188  T
Q  98 gtgagagtgtacatgcggtttaaaaatgagaatgttaactgcttttttgagttgatacacaaagataacaactacttaatgaatcggttatcatattatt 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27256189 gtgagagtgtacatgcggtttaaaaatgagaatgttaactgcttttttgagttgatacacaaagataacaactacttaatgaatcggttatcatattatt 27256288  T
Q  198 tttgtgataaatgcacattcaattagattgaattgttataa 238  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  27256289 tttgtgataaatgcacattcaattagattgaattgttataa 27256329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 21200058 - 21200291
Alignment:
Q  1 tacacagactaagaacttaccagacaaatggagccaccttcgaaaattggtaacaatgtcttttggaatgnnnnnnnnnnnnn-gaaactttgaaagagt 99  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||              |||||||||||||| |    
T  21200058 tacacagactaagaacttaccaggcaaatggagccaccttcgaaaattgctaacaatgtcttttggaatgttttttctttttttgaaactttgaaagaat 21200157  T
Q  100 gagagtgtacatgcggtttaaaaatgagaatgttaactgcttttttgagttgatacacaaagataacaactacttaatgaatcggttatcatattatttt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21200158 gagagtgtacatgcggtttaaaaatgagaatgttaactgcttttttgagttgatacacaaagataacaactacttaatgaatcggttatcatattatttt 21200257  T
Q  200 tgtgataaatgcacattcaattagattgaattgt 233  Q
    ||||||||||||||||||||||||||||||||||    
T  21200258 tgtgataaatgcacattcaattagattgaattgt 21200291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 291
Target Start/End: Complemental strand, 7745176 - 7745125
Alignment:
Q  240 agcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||    
T  7745176 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgaca 7745125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 291
Target Start/End: Complemental strand, 10442856 - 10442802
Alignment:
Q  237 aagagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||||||||||||       |||||||||| ||||||||||    
T  10442856 aagagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgaca 10442802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 291
Target Start/End: Original strand, 24128237 - 24128291
Alignment:
Q  237 aagagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||||||||||||       |||||||||| ||||||||||    
T  24128237 aagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgaca 24128291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 291
Target Start/End: Original strand, 47290064 - 47290118
Alignment:
Q  237 aagagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||||||||||||       |||||||||| ||||||||||    
T  47290064 aagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgaca 47290118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 291
Target Start/End: Complemental strand, 50156645 - 50156591
Alignment:
Q  237 aagagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||| ||||||||       |||||||||||||||||||||    
T  50156645 aagagcaatgctatatattaagaaagattttttcaagaaaattttaagaatgaca 50156591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 22199256 - 22199313
Alignment:
Q  234 tataagagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||| |||||||||||||||||||||||||       |||||||||| ||||||||||    
T  22199256 tatatgagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgaca 22199313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 31078885 - 31078832
Alignment:
Q  238 agagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    ||||||||||||||||||||||||||       |||||||||| ||||||||||    
T  31078885 agagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgaca 31078832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 291
Target Start/End: Complemental strand, 3574596 - 3574540
Alignment:
Q  235 ataagagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  3574596 ataagagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgaca 3574540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 291
Target Start/End: Original strand, 2754715 - 2754769
Alignment:
Q  237 aagagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||||||||||||       |||||||||||||||||||||    
T  2754715 aagagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgaca 2754769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 291
Target Start/End: Original strand, 11347266 - 11347320
Alignment:
Q  237 aagagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||||||||||||       |||||||||||||||||||||    
T  11347266 aagagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgaca 11347320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 42297352 - 42297405
Alignment:
Q  238 agagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||    
T  42297352 agagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgaca 42297405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 37217118 - 37217066
Alignment:
Q  239 gagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||||||||||       |||||||||||||||||||||    
T  37217118 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgaca 37217066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 291
Target Start/End: Complemental strand, 3137481 - 3137427
Alignment:
Q  237 aagagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||||||||||||       |||||||||| ||||||||||    
T  3137481 aagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgaca 3137427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 3456064 - 3456114
Alignment:
Q  239 gagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatga 289  Q
    |||||||||||||||||||||||||       |||||||||||||||||||    
T  3456064 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatga 3456114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 291
Target Start/End: Original strand, 37522051 - 37522105
Alignment:
Q  237 aagagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    ||||||||| |||||||||||||||||       |||||||||||||||||||||    
T  37522051 aagagcaatactatatatcaagaaagattttttcaagaaaattttaagaatgaca 37522105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 263
Target Start/End: Complemental strand, 47402666 - 47402637
Alignment:
Q  234 tataagagcaatgctatatatcaagaaaga 263  Q
    ||||||||||||||||||||||||||||||    
T  47402666 tataagagcaatgctatatatcaagaaaga 47402637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 48160905 - 48160955
Alignment:
Q  239 gagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatga 289  Q
    |||||||||||||||||||||||||       |||||||||||||||||||    
T  48160905 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatga 48160955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 6127272 - 6127327
Alignment:
Q  236 taagagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    ||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  6127272 taagagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgaca 6127327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 291
Target Start/End: Complemental strand, 23291151 - 23291097
Alignment:
Q  237 aagagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||||||||||||       |||||||||||||||||||||    
T  23291151 aagagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgaca 23291097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 17705530 - 17705478
Alignment:
Q  239 gagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||||||||||       |||||||||||||||||||||    
T  17705530 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgaca 17705478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 291
Target Start/End: Original strand, 28675146 - 28675200
Alignment:
Q  237 aagagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||||||||||||       |||||||||| ||||||||||    
T  28675146 aagagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgaca 28675200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 33695393 - 33695340
Alignment:
Q  238 agagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    ||||||||||||||||||||||||||       |||||||||| ||||||||||    
T  33695393 agagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgaca 33695340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 33696695 - 33696748
Alignment:
Q  238 agagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    ||||||||||||||||||||||||||       |||||||||| ||||||||||    
T  33696695 agagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgaca 33696748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 291
Target Start/End: Original strand, 4394 - 4448
Alignment:
Q  237 aagagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||||||||||||       |||||||||||||||||||||    
T  4394 aagagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgaca 4448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 291
Target Start/End: Original strand, 2477634 - 2477688
Alignment:
Q  237 aagagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||||||||||||       |||||||||||||||||||||    
T  2477634 aagagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgaca 2477688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 291
Target Start/End: Original strand, 4892200 - 4892254
Alignment:
Q  237 aagagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||||||||||||       |||||||||||||||||||||    
T  4892200 aagagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgaca 4892254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 11361196 - 11361144
Alignment:
Q  239 gagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||||||||||       |||||||||||||||||||||    
T  11361196 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgaca 11361144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 25398238 - 25398290
Alignment:
Q  239 gagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||||||||||       |||||||||||||||||||||    
T  25398238 gagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgaca 25398290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 33584394 - 33584342
Alignment:
Q  239 gagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||||||||||       |||||||||||||||||||||    
T  33584394 gagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgaca 33584342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 291
Target Start/End: Complemental strand, 6043579 - 6043524
Alignment:
Q  236 taagagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    ||||||||||||||||||||||||||||       |||||||||| ||||||||||    
T  6043579 taagagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgaca 6043524  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 291
Target Start/End: Original strand, 18404440 - 18404494
Alignment:
Q  237 aagagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||||||||||||       |||||||||||||||||||||    
T  18404440 aagagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgaca 18404494  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 291
Target Start/End: Original strand, 25463674 - 25463728
Alignment:
Q  237 aagagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||||||||||||       |||||||||||||||||||||    
T  25463674 aagagcaatgctatatatcaagaaagattttatgaagaaaattttaagaatgaca 25463728  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 289
Target Start/End: Complemental strand, 36966782 - 36966723
Alignment:
Q  230 ttgttataagagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatga 289  Q
    |||||||| |||||||||||||||||||||||||       |||||||||| ||||||||    
T  36966782 ttgttatatgagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatga 36966723  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 289
Target Start/End: Original strand, 19015401 - 19015454
Alignment:
Q  236 taagagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatga 289  Q
    ||||||||||||||||||||||||||||       |||||||||| ||||||||    
T  19015401 taagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatga 19015454  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 41876508 - 41876455
Alignment:
Q  238 agagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    ||||||||||||||||||||||||||       || ||||||||||||||||||    
T  41876508 agagcaatgctatatatcaagaaagattttttcaaaaaaattttaagaatgaca 41876455  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 35160756 - 35160809
Alignment:
Q  238 agagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||    
T  35160756 agagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgaca 35160809  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 291
Target Start/End: Complemental strand, 23268131 - 23268075
Alignment:
Q  235 ataagagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||||||||||||||       |||||||||| ||||||||||    
T  23268131 ataagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgaca 23268075  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 33380207 - 33380259
Alignment:
Q  239 gagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||||||||||       |||||||||||||||||||||    
T  33380207 gagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgaca 33380259  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 291
Target Start/End: Original strand, 10661888 - 10661939
Alignment:
Q  240 agcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||    
T  10661888 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgaca 10661939  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 263
Target Start/End: Original strand, 43330907 - 43330936
Alignment:
Q  234 tataagagcaatgctatatatcaagaaaga 263  Q
    ||||||||||||||||||||||||||||||    
T  43330907 tataagagcaatgctatatatcaagaaaga 43330936  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 7475574 - 7475521
Alignment:
Q  238 agagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    ||||||||||||||||||||||||||       |||||||||| ||||||||||    
T  7475574 agagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgaca 7475521  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 32393858 - 32393910
Alignment:
Q  239 gagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||||||||||       |||||||||||||||||||||    
T  32393858 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgaca 32393910  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 35353041 - 35353093
Alignment:
Q  239 gagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||||||||||       |||||||||||||||||||||    
T  35353041 gagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgaca 35353093  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 291
Target Start/End: Complemental strand, 1646032 - 1645978
Alignment:
Q  237 aagagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||||||||||||       |||||||||||||||| ||||    
T  1646032 aagagcaatgctatatatcaagaaagattttatcaagaaaattttaagaaagaca 1645978  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 291
Target Start/End: Complemental strand, 6108300 - 6108246
Alignment:
Q  237 aagagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||| ||||||||||||||||       |||||||||||||||||||||    
T  6108300 aagagcaatgttatatatcaagaaagatttttttaagaaaattttaagaatgaca 6108246  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 291
Target Start/End: Complemental strand, 17841917 - 17841863
Alignment:
Q  237 aagagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||||||||||||       |||||||||| ||||||||||    
T  17841917 aagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgaca 17841863  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 291
Target Start/End: Original strand, 32064743 - 32064797
Alignment:
Q  237 aagagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||||||||||||       |||||||||| ||||||||||    
T  32064743 aagagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgaca 32064797  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 291
Target Start/End: Complemental strand, 40780196 - 40780142
Alignment:
Q  237 aagagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||||||||||||       |||||||||| ||||||||||    
T  40780196 aagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgaca 40780142  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 289
Target Start/End: Original strand, 15187557 - 15187610
Alignment:
Q  236 taagagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatga 289  Q
    ||||||||||||||||||||||||||||       |||||||||| ||||||||    
T  15187557 taagagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 15187610  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 42755112 - 42755055
Alignment:
Q  234 tataagagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    ||||||||||||| ||||||||||||||||       |||||||||| ||||||||||    
T  42755112 tataagagcaatgatatatatcaagaaagattttatcaagaaaatttcaagaatgaca 42755055  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 3961979 - 3962031
Alignment:
Q  239 gagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||||||||||       |||||||||||||||||||||    
T  3961979 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgaca 3962031  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 24394972 - 24395024
Alignment:
Q  239 gagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||||||||||       |||||||||||||||||||||    
T  24394972 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgaca 24395024  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 25167915 - 25167863
Alignment:
Q  239 gagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||||||||||       |||||||||||||||||||||    
T  25167915 gagcaatgctatatatcaagaaagatttttttaagaaaattttaagaatgaca 25167863  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 34482835 - 34482887
Alignment:
Q  239 gagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||||||||||       |||||||||||||||||||||    
T  34482835 gagcaatgctatatatcaagaaagattttattaagaaaattttaagaatgaca 34482887  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 45637708 - 45637764
Alignment:
Q  235 ataagagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||||||||||||||       |||||||||| ||||||||||    
T  45637708 ataagagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgaca 45637764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 291
Target Start/End: Complemental strand, 37477148 - 37477093
Alignment:
Q  236 taagagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    ||||||||||||||||||||||||||||       ||||||| |||||||||||||    
T  37477148 taagagcaatgctatatatcaagaaagattttctcaagaaaaatttaagaatgaca 37477093  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 291
Target Start/End: Original strand, 15329271 - 15329325
Alignment:
Q  237 aagagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||||||||||||       |||||||||| ||||||||||    
T  15329271 aagagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgaca 15329325  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 15577916 - 15577863
Alignment:
Q  238 agagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    ||||||||||||||||||||||||||       |||||||||| ||||||||||    
T  15577916 agagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgaca 15577863  T

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Target: scaffold0471 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 291
Target Start/End: Original strand, 12840 - 12894
Alignment:
Q  237 aagagcaatgctatatatcaagaaagannnnnnnaagaaaattttaagaatgaca 291  Q
    |||||||||||||||||||||||||||       |||||||||| ||||||||||    
T  12840 aagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgaca 12894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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