View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14223_high_17 (Length: 240)
Name: NF14223_high_17
Description: NF14223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14223_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 225
Target Start/End: Complemental strand, 15922276 - 15922063
Alignment:
| Q |
12 |
caaaggagaaaaagcaagatcaggaccaagcacatgatcatgaacaagttcatcaactgaatactcattttcatccaaccattccctcagcgttttatca |
111 |
Q |
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| T |
15922276 |
caaaggagaaaaagcaagatcaggaccaagcacatgatcatgaacaagttcatcaactgaatactcattttcatccaaccattccctcagcgttttatca |
15922177 |
T |
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| Q |
112 |
cactgcgactccgcgattcgcacaccggcatcattgcatttgataaacggtctgccggatttggctattctaactcgaccggcaacatgtgagtacaaat |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
15922176 |
cactgcgactccgcgattcgcacaccggcatcattgcatttgataaacggtctgccggatttggctattctaactcgaccggcaacatgcgagtacaaat |
15922077 |
T |
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| Q |
212 |
ccagcagtggaaac |
225 |
Q |
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|||||||||||||| |
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| T |
15922076 |
ccagcagtggaaac |
15922063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 46009641 - 46009447
Alignment:
| Q |
12 |
caaaggagaaaaagcaagatcaggaccaagcacatgatcatgaacaagttcatcaactgaatactcattttcatccaaccattccctcagcgttttatca |
111 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |||||||||||||| || ||||| || |||||||||||||| | ||| ||||| ||| |
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| T |
46009641 |
caaaggagaaaatgcaagatcaggaccaagcacatgatcatatacaagttcatcaacagagtactctttctcatccaaccattcacgcagtgttttctca |
46009542 |
T |
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| Q |
112 |
cactgcgactccgcgattcgcacaccggcatcattgcatttgataaacggtctgccggatttggctattctaactcgaccggcaacatgtgagta |
206 |
Q |
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| T |
46009541 |
cagtgtgactctgctattcgcacacccgcgtcgttgcacttgataaacggtcttcctgattctgatattctaaccctacctgaaacatgtgagta |
46009447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 13114570 - 13114382
Alignment:
| Q |
16 |
ggagaaaaagcaagatcaggaccaagcacatgatcatgaacaagttcatcaactgaatactcattttcatccaaccattccctcagcgttttatcacact |
115 |
Q |
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||||||||||||||||||||||||||||||||||| | |||| | | ||||| || || |||||||| |||||||| |||||||||||||||| |
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| T |
13114570 |
ggagaaaaagcaagatcaggaccaagcacatgatctgggacaaatccttcaacactgtattctttttcatcaaaccattcatgcagcgttttatcacacc |
13114471 |
T |
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| Q |
116 |
gcgactccgcgattcgcacaccggcatcattgcatttgataaacggtctgccggatttggctattctaactcgaccggcaacatgtgag |
204 |
Q |
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| T |
13114470 |
gtgtctcagccacgcgtactcctgcatcgttgcacttgataaacggtcttccagattcgagtattctaatccgacctgaaacatgtgag |
13114382 |
T |
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