View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14223_high_9 (Length: 404)
Name: NF14223_high_9
Description: NF14223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14223_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 8 - 389
Target Start/End: Complemental strand, 24031441 - 24031060
Alignment:
| Q |
8 |
cacagatagctaaacaagcacttaagtttgtactgcacatacacataataaaggattagataatgcaatcataaaataaataactaagtacaaggaatac |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24031441 |
cacaaatagctaaacaagcacttaagtttgtactgcacatacacataataaaggattagataatgcaatcataaaataaataactaagtacaaggaatac |
24031342 |
T |
|
| Q |
108 |
caaacacttggtgaaatagaagcattaaacttcaagcataagtatacaccctatattactcatcataaaattcattacttattatcatcaaagaatgcat |
207 |
Q |
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| T |
24031341 |
caaacacttggtgaaatagaagcattaaacttcaagcataagtatacaccctatattattcatcataaaactcattacttattatcatcaaagaatgcat |
24031242 |
T |
|
| Q |
208 |
aataaatcattatagtccaaaacacttaattctaacaattaaccattactatctaagctcacaaatactcatatatgaaaggtttaagatgaataattgc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24031241 |
aataaatcattatagtccaaaacacttaattctaacaattaaccattactatctaagctcacaaatactcatatatgaaaggtttaagatgaataattgc |
24031142 |
T |
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| Q |
308 |
aagccagttgctactccacttgtaacaaatgaaaagatgcaaaaggatgatggatcgccagagattctgatactaccttttt |
389 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24031141 |
aagccagttgctactccacttgtaacaaatgaatagatgcaaaaggatgatggatcgccagagattctgatactaccttttt |
24031060 |
T |
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