View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14223_low_12 (Length: 372)
Name: NF14223_low_12
Description: NF14223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14223_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 27514171 - 27513835
Alignment:
| Q |
1 |
ccttctccttgccaccatccaatcttcttccctttcttctctgatttttcaaattccgtctgttcaaattgtgaaaccttcccaaaccttctaattggct |
100 |
Q |
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|||||||||||||||||||| ||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27514171 |
ccttctccttgccaccatccgatcttcttctctttgttctctgatttttcaaattctgtctgttcaaattgtgaaaccttcccaaaccttctaattggct |
27514072 |
T |
|
| Q |
101 |
ttcggtgggaagaggaaccgcagaaaaaaccagaacagagacggaaaccgaaatgaaggaactgctctgtccttcgatgagtaagaacaaagaaaaacga |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| | ||| ||||||||||| |||| ||||| |||||||||||||||||||||||||| |
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| T |
27514071 |
ttcggtgggaagaggaaccgcagaaaaaaccagaaaggagacgaagaccagaatgaaggaaccgctccgtcctccgatgagtaagaacaaagaaaaacga |
27513972 |
T |
|
| Q |
201 |
tctgaaattcatgctaaactcttcaaaagaagttttagaaacgtgctaagtcgaaagctcgcgatgctgttattgaaagagctatcgagctcggtgaaga |
300 |
Q |
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||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
27513971 |
tctgaaattcatgctaaactcgtcagaagaagttttagaaacatgctaagtcgaaagctcacgatgctactattgaaagagctatcgagctcggtgaaga |
27513872 |
T |
|
| Q |
301 |
ggttcactctctctcactggatggctgttgttgttttga |
339 |
Q |
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|||| ||||||||||||| ||||||||||||||||||| |
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| T |
27513871 |
ggtt--ctctctctcactgaatggctgttgttgttttga |
27513835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 169 - 315
Target Start/End: Original strand, 8674890 - 8675040
Alignment:
| Q |
169 |
gtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactct----tcaaaagaagttttagaaacgtgctaagtcgaaagctcgcga |
264 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||| |||||| || | ||||| |||||||| || ||||| || |
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| T |
8674890 |
gtccttcaatgattaagaacaaagaaaaacgatctgaaattcatgctaaactcaagcatcagaagaagcttgaaaaacgcgctaagtctaatgctcgtga |
8674989 |
T |
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| Q |
265 |
tgctgttattgaaagagctatcgagctcggtgaagaggttcactctctctc |
315 |
Q |
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||||| | || |||||||||||||||||||||||||||||||||||||||| |
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| T |
8674990 |
tgctgctgttaaaagagctatcgagctcggtgaagaggttcactctctctc |
8675040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 39209695 - 39209911
Alignment:
| Q |
1 |
ccttctccttgccaccatccaatcttcttccctttcttctctgatttttcaaattccgtctgttcaaattgtgaaaccttcccaaaccttctaattggct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39209695 |
ccttctccttgccaccatccaatcttcttccctttcttctctgatttttcaaattccgtctgttcaaattgtgaaaccttcccaaaccttctaattggct |
39209794 |
T |
|
| Q |
101 |
ttcggtgggaagaggaaccgcagaaaaaaccagaacagagacggaaaccgaaatgaaggaactgctctgtccttcgatgagtaagaacaaagaaaaacga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39209795 |
ttcggtgggaagaggaaccgcagaaaaaaccagaacagtgacggaaaccgaaatgaaggaactgctccgtccttcgatgagtaagaacaaagaaaaacga |
39209894 |
T |
|
| Q |
201 |
tctgaaattcatgctaa |
217 |
Q |
| |
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||||||||||||||||| |
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| T |
39209895 |
tctgaaattcatgctaa |
39209911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 244 - 339
Target Start/End: Original strand, 39209906 - 39210001
Alignment:
| Q |
244 |
tgctaagtcgaaagctcgcgatgctgttattgaaagagctatcgagctcggtgaagaggttcactctctctcactggatggctgttgttgttttga |
339 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
39209906 |
tgctaagtcgaaagctcgcgatgctgctattgaaagagctatcgagctcggtgaagaggttcactctctctcactgaatggatgttgttgttttga |
39210001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 172 - 315
Target Start/End: Complemental strand, 24037194 - 24037047
Alignment:
| Q |
172 |
cttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactct----tcaaaagaagttttagaaacgtgctaagtcgaaagctcgcgatgc |
267 |
Q |
| |
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||||||||| |||||| |||| |||||||||||||||||||||||||||| ||| |||||| || |||||| |||||||||||||||||||||| |
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| T |
24037194 |
cttcgatgattaagaaaaaaggaaaacgatctgaaattcatgctaaactcaagcgtcagaagaagcttgagaaacacgctaagtcgaaagctcgcgatgt |
24037095 |
T |
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| Q |
268 |
tgttattgaaagagctatcgagctcggtgaagaggttcactctctctc |
315 |
Q |
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|| | || |||| ||||||||| ||||||||||||||| ||||||||| |
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| T |
24037094 |
tgctgttaaaagcgctatcgagatcggtgaagaggttcgctctctctc |
24037047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 24037323 - 24037276
Alignment:
| Q |
75 |
aaccttcccaaaccttctaattggctttcggtgggaagaggaaccgca |
122 |
Q |
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|||||||||||||||| | || ||||||||||||||||||||| |||| |
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| T |
24037323 |
aaccttcccaaaccttatgatcggctttcggtgggaagaggaagcgca |
24037276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 9460971 - 9461013
Alignment:
| Q |
75 |
aaccttcccaaaccttctaattggctttcggtgggaagaggaa |
117 |
Q |
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| T |
9460971 |
aaccttcccaaaccttctgattggctttcggtgggaacaggaa |
9461013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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