View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14223_low_13 (Length: 350)
Name: NF14223_low_13
Description: NF14223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14223_low_13 |
 | |
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| [»] scaffold0927 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 14 - 331
Target Start/End: Complemental strand, 28566958 - 28566645
Alignment:
| Q |
14 |
caaaggcagaggattacttgaacaatggaatcgtgagcactggagtgcatgttgtgcttgaacatgcattcttcctgttggatcatgttaatggtataac |
113 |
Q |
| |
|
|||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
28566958 |
caaaagcagaggattacttaaacaatggaatagtgagcactggagtgcatgttgtgcttgaacatgcattcttccttttggatcatgttagtggtataac |
28566859 |
T |
|
| Q |
114 |
aaaggagacaattgatatcttggatgaaaattttccaaatgttatatattcagtggcaaaaattcttcgtctctctgatgatttagaaggagctaaggta |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28566858 |
aaaggagacaattgatatcttggatgaaaatttcccaaatgttatatattcagtggcaaaaattcttcgtctctctgatgatttagaaggagctaaggta |
28566759 |
T |
|
| Q |
214 |
agaaatatgtctcctaaattagaatatatattaaacaagtatttgattaaattgttcaaccgattaactcaactgttaaatgtaacgttctaatgataag |
313 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||| | |||||||||||| |||||||||||||| |
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|
| T |
28566758 |
agaaatatgtctcctaaattaga----atattaaacaagtattcgattaaattgttcaaccacttaactcgattgttaaatgtaaagttctaatgataag |
28566663 |
T |
|
| Q |
314 |
agttatcatggatgaatg |
331 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
28566662 |
agttatcatggatgaatg |
28566645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 28584929 - 28584620
Alignment:
| Q |
18 |
ggcagaggattacttgaacaatggaatcgtgagcactggagtgcatgttgtgcttgaacatgcattcttcctgttggatcatgttaatggtataacaaag |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28584929 |
ggcagaggattacttgaataatggaatcgtgagcactggagttcatgttgtgcttatacatgcattcttcctgttggatcatgttaatggtataacaaag |
28584830 |
T |
|
| Q |
118 |
gagacaattgatatcttggatgaaaattttccaaatgttatatattcagtggcaaaaattcttcgtctctctgatgatttagaaggagctaaggtaagaa |
217 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
28584829 |
caaacaattgatatcttggatgaaaagtttccaaatgtcatatattcagtggcaaaaattcttcgtctctctgatgatttagaaggagctaaggtatgaa |
28584730 |
T |
|
| Q |
218 |
atatgtctcctaaattagaatatatattaaacaagtatttgattaaattgttcaaccgattaactcaactgttaaatgtaacgttctaatgataagagtt |
317 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||| | |||||||||||| ||||||||||||||| || |
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|
| T |
28584729 |
atatgtctcctaaattaga----atattaaacaagtattcgattaaattgttcaaccacttaactcgattgttaaatgtaaagttctaatgataagaatt |
28584634 |
T |
|
| Q |
318 |
atcatggatgaatg |
331 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
28584633 |
atcatggatgaatg |
28584620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 26314842 - 26314550
Alignment:
| Q |
18 |
ggcagaggattacttgaacaatggaatcgtgagcactggagtgcatgttgtgcttgaacatgcattcttcctgttggatcatgttaatggtataacaaag |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
26314842 |
ggcagaggattacttgaacaatggaattgtgagcaccggagtgcatgttgtgcttgtacatgcattcttcctgttggatcatgttcatggtataacaaag |
26314743 |
T |
|
| Q |
118 |
gagacaattgatatcttggatgaaaattttccaaatgttatatattcagtggcaaaaattcttcgtctctctgatgatttagaaggagctaaggtaagaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26314742 |
gagacaattgatatcttggatgaaaaattcccaaatgtcatatattcagtggcgaaaattcttcgtctctctgatgatttagaaggagctaaggtaagaa |
26314643 |
T |
|
| Q |
218 |
atatgtctcctaaattagaatatatattaaacaagtatttgattaaattgttcaaccgattaactcaactgttaaatgtaacgttctaatgataaga |
314 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||| |||||| |
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|
| T |
26314642 |
atatgtctcctaaattaga----aaattaaacaagtatttgattaaattgttcaaccaattaactcaattgttaaatgtaaagttctaattataaga |
26314550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 319
Target Start/End: Complemental strand, 28573699 - 28573406
Alignment:
| Q |
19 |
gcagaggattacttgaacaatggaatcgtgagcactggagtgcatgttgtgcttgaacatgcattcttcctgttggatcatgttaatggtataacaaagg |
118 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28573699 |
gcagaggattacttgaataatggaatcgtgagcactggagttcatgttgtgcttatacatgcattcttcctgttggatcatgttaatggtataacaaaga |
28573600 |
T |
|
| Q |
119 |
agacaattgatatcttggatgaaaattttccaaatgttatatattcagtggcaaaaattcttcgtctctctgatgatttagaaggagctaaggtaagaaa |
218 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
28573599 |
aaacaattgatatcttggatgaaaagtttccaaatgtcatatattcagtggcaaaaattcttcgtctctctgatgatttagaaggagctaaggtatgaaa |
28573500 |
T |
|
| Q |
219 |
tatgtctcctaaattagaatatatattaaacaagtatttgattaaattgttcaaccgattaactcaactgttaaatgtaacgttctaatgataagagtta |
318 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||||||| |||||| ||| ||| |||||||| ||||||||||||||| ||| |
|
|
| T |
28573499 |
tatgtctcctaaat-------tatattaaacaaatatttgattaaattgttcaaccaattaacgcaattgtaaaatgtaaagttctaatgataagaatta |
28573407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 20616033 - 20615835
Alignment:
| Q |
20 |
cagaggattacttgaacaatggaatcgtgagcactggagtgcatgttgtgcttgaacatgcattcttcctgttggatcatgttaatggtataacaaagga |
119 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||| ||||| |||||||| ||| ||||| |||||||| ||||||||| ||| |||||||||||||| |
|
|
| T |
20616033 |
cagaggaatacttgaacaatggaattgtgagcacaggagttcatgttgtacttatccatgctttcttcctcatggatcatgctaagggtataacaaagga |
20615934 |
T |
|
| Q |
120 |
gacaattgatatcttggatgaaaattttccaaatgttatatattcagtggcaaaaattcttcgtctctctgatgatttagaaggagctaaggtaagaaa |
218 |
Q |
| |
|
|| || |||||| |||||| | ||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
20615933 |
aactctttctatcttagatgaagaatttccaaatatcatttattcagtggcaaaaattcttcgtctctctgatgatttagaaggagttaaggtaagaaa |
20615835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0927 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: scaffold0927
Description:
Target: scaffold0927; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 23 - 319
Target Start/End: Original strand, 1 - 292
Alignment:
| Q |
23 |
aggattacttgaacaatggaatcgtgagcactggagtgcatgttgtgcttgaacatgcattcttcctgttggatcatgttaatggtataacaaaggagac |
122 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1 |
aggattacttgaacaacggaatagtgagcactggagtgcatgttgtgcttgaacatgcattcttcctgttggatcatgttaatggtataacaaaggagac |
100 |
T |
|
| Q |
123 |
aattgatatcttggatgaaaattttccaaatgttatatattcagtggcaaaaattcttcgtctctctgatgatttagaaggagctaaggtaagaaatatg |
222 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
101 |
aactgatatcttggatgaaaattttccaaatgttatatattcagtggcaaaaattcttcgtctcgctgatgatttagaaggagctaaggtaagaaatata |
200 |
T |
|
| Q |
223 |
tctcctaaattagaatatatattaaacaagtatttgattaaattgttcaaccgattaactcaactgttaaatgtaacgttctaatgataagagttat |
319 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||| |||||| ||| ||| |||||||| ||||||||||||||| |||| |
|
|
| T |
201 |
tctcataaattagaat-----ttaaacaagtatttgattaaattgttcaaccaattaacacaattgtaaaatgtaaagttctaatgataagaattat |
292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 24080352 - 24080566
Alignment:
| Q |
18 |
ggcagaggattacttgaacaatggaatcgtgagcactggagtgcatgttgtgcttgaacatgcattcttcctgttggatcatgttaatggtataacaaag |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24080352 |
ggcagaggattacttgaacaatggaattgtgagcaccggagtccatgttgtgcttgtacatgcattcttcttgttggatcatgttaatggtataacaaag |
24080451 |
T |
|
| Q |
118 |
gagacaattgatatcttggatgaaaattttccaaatgttatatattcagtggcaaaaattcttcgtctctctgatgatttagaaggagctaaggtaagaa |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24080452 |
gagacagttgatatcttggatgaaaattttccaaatgtcatatattcggtggcaaaaattcttcgtctctctgatgatttagaaggagctaaggtaagaa |
24080551 |
T |
|
| Q |
218 |
atatgtctcctaaat |
232 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
24080552 |
atatgtctcccaaat |
24080566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 24070384 - 24070170
Alignment:
| Q |
18 |
ggcagaggattacttgaacaatggaatcgtgagcactggagtgcatgttgtgcttgaacatgcattcttcctgttggatcatgttaatggtataacaaag |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24070384 |
ggcagaggattacttgaacaatggaattgtgagcaccggagtccatgttgtgcttgtacatgcattcttcttgttggatcatgttaatggtataacaaag |
24070285 |
T |
|
| Q |
118 |
gagacaattgatatcttggatgaaaattttccaaatgttatatattcagtggcaaaaattcttcgtctctctgatgatttagaaggagctaaggtaagaa |
217 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24070284 |
gagacagttgatatcttggatgaaaaatttccaaatgtcatatattcggtggcaaaaattcttcgtctctctgatgatttagaaggagctaaggtaagaa |
24070185 |
T |
|
| Q |
218 |
atatgtctcctaaat |
232 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
24070184 |
atatgtctcccaaat |
24070170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 257 - 319
Target Start/End: Complemental strand, 24070159 - 24070098
Alignment:
| Q |
257 |
tgattaaattgttcaaccgattaactcaactgttaaatgtaacgttctaatgataagagttat |
319 |
Q |
| |
|
|||||| ||||||| |||||||| |||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
24070159 |
tgattatattgttctaccgatta-ctcaactgttaaatgtaaagttctaatgataagaattat |
24070098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 257 - 319
Target Start/End: Original strand, 24080577 - 24080638
Alignment:
| Q |
257 |
tgattaaattgttcaaccgattaactcaactgttaaatgtaacgttctaatgataagagttat |
319 |
Q |
| |
|
|||||| ||||||| |||||||| |||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
24080577 |
tgattatattgttctaccgatta-ctcaactgttaaatgtaaagttctaatgataagaattat |
24080638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 2602807 - 2602861
Alignment:
| Q |
160 |
tattcagtggcaaaaattcttcgtctctctgatgatttagaaggagctaaggtaa |
214 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
2602807 |
tattcagtagcaaaaattctccgtctttctgatgatttggaaggagctaaggtaa |
2602861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 2602661 - 2602745
Alignment:
| Q |
14 |
caaaggcagaggattacttgaacaatggaatcgtgagcactggagtgcatgttgtgcttgaacatgcattcttcctgttggatca |
98 |
Q |
| |
|
|||||||||| || ||||| ||||||||||| || ||| | ||||||||||| || |||| ||||| |||||||| || ||||| |
|
|
| T |
2602661 |
caaaggcagatgagtacttaaacaatggaattgttagcccaggagtgcatgtggtacttgtccatgcgttcttcctctttgatca |
2602745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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