View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14223_low_14 (Length: 333)
Name: NF14223_low_14
Description: NF14223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14223_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 12 - 318
Target Start/End: Complemental strand, 56231200 - 56230894
Alignment:
| Q |
12 |
catcatcaaagtaatcagaagcatcacctccaagagaaagggaaagaacatcaactccatcatgaatagccatatcaaaggctgccattatatcagcatc |
111 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56231200 |
catcatcaaagtaatcagaagcatcaccaccaagagaaagggaaagaacatcaactccatcatgaatagccatatcaaaggctgccattatatcagcatc |
56231101 |
T |
|
| Q |
112 |
aaaacatccgttgtgatcaattgctggccaacagactttgtaagcagcaactcttgctttgggagaaccacctttcgcagttccatttcctaagccaaaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56231100 |
aaaacatccgttgtgatcaattgctggccaacagactttgtaagcagcaactcttgctttgggagaaccacctttcgcagttccatttcctaagccaaaa |
56231001 |
T |
|
| Q |
212 |
acattaactccagaaacaaagtttcctcctattgttgatagtgtgtgagatccatgaccttcattgtctcgtgcagtatcaagtgtgccgttctgtagta |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56231000 |
acattaactccagaaacaaagtttcctcctattgttgatagtgtgtgagatccatgaccttcattgtctcgtgcagtatcaagtgtgccgttctgtagta |
56230901 |
T |
|
| Q |
312 |
ccattga |
318 |
Q |
| |
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||||||| |
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| T |
56230900 |
ccattga |
56230894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 12 - 308
Target Start/End: Complemental strand, 39188926 - 39188630
Alignment:
| Q |
12 |
catcatcaaagtaatcagaagcatcacctccaagagaaagggaaagaacatcaactccatcatgaatagccatatcaaaggctgccattatatcagcatc |
111 |
Q |
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||||||||||||||||| |||| || ||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39188926 |
catcatcaaagtaatcaacagcaggacttccaagagatatggaaagaacatcaaccccatcatgaatagccatatcaaaggctgccatgatatcagcatc |
39188827 |
T |
|
| Q |
112 |
aaaacatccgttgtgatcaattgctggccaacagactttgtaagcagcaactcttgctttgggagaaccacctttcgcagttccatttcctaagccaaaa |
211 |
Q |
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||| ||| || || |||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| || |||||||||| | |
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| T |
39188826 |
aaagcattcgctgccatcaattggtggccagcagactttgtaagcagcaactcttgctttgggagagccacctttagcagttccgttgcctaagccaaca |
39188727 |
T |
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| Q |
212 |
acattaactccagaaacaaagtttcctcctattgttgatagtgtgtgagatccatgaccttcattgtctcgtgcagtatcaagtgtgccgttctgta |
308 |
Q |
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| |||| |||| ||||||||||| ||||||| ||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||| |||| |
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| T |
39188726 |
aaattagctccggaaacaaagttccctcctaatgttgatagtgtgtgagatccatgacctttattatctcgtggagtatcaagtgtgccgttttgta |
39188630 |
T |
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