View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14223_low_16 (Length: 281)
Name: NF14223_low_16
Description: NF14223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14223_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 34381817 - 34381966
Alignment:
| Q |
1 |
taataagtaattaatatatactatgaccaatcatataattcaagacgacnnnnnnntactatatgccaaatacccacacaaaaagtccagacaataggga |
100 |
Q |
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| T |
34381817 |
taataagtaattaatatatactatgaccaatcatataattcaagacgacaaaaaaatactatatgccaaatacccacacaaaaagtccacacaataggga |
34381916 |
T |
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| Q |
101 |
ttaggccgccgcaaagctcatgatgacatacaaataaccctatcacaggt |
150 |
Q |
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| T |
34381917 |
ttaggccgccgcaaagctcatgatgacatacacataaccctatcacaggt |
34381966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 259
Target Start/End: Original strand, 34382041 - 34382075
Alignment:
| Q |
225 |
tgaatacatggaccctgagggtggctggatggtac |
259 |
Q |
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| T |
34382041 |
tgaatacatggaccctgagggtggctggatggtac |
34382075 |
T |
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