View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14223_low_3 (Length: 651)

Name: NF14223_low_3
Description: NF14223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14223_low_3
NF14223_low_3
[»] chr8 (1 HSPs)
chr8 (9-635)||(4612716-4613348)


Alignment Details
Target: chr8 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 9 - 635
Target Start/End: Complemental strand, 4613348 - 4612716
Alignment:
Q  9 agcacagatattatcgacacactgcacgaaaatagtgaggatgaggttaatattattctgtcaaataatatgcattgtctatattaccccttaattatac 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4613348 agcacagatattatcgacacactgcacgaaaatagtgaggatgaggttaatattattctgtcaaataatatgcattgtctatattaccccttaattatac 4613249  T
Q  109 tagatagaaattggaatgatgtttttgttcagtttaagctctgaatcatgagaaaagaaatgttgactcgaaattcaaaacccaagagccaagacagaac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4613248 tagatagaaattggaatgatgtttttgttcagtttaagctctgaatcatgagaaaagaaatgttgactcgaaattcaaaacccaagagccaagacagaac 4613149  T
Q  209 agtcaaatgaaactctaatcattgtcgatatgaaatttaagattcaaactctgcctttggattggactccttcacacttcagtttccacgcacttcctta 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4613148 agtcaaatgaaactctaatcattgtcgatatgaaatttaagattcaaactctgcctttggattggactccttcacacttcagtttccacgcacttcctta 4613049  T
Q  309 acgcgtgggttcacgcggtaaaaactttgattttcttcatttatttatcaattatttctttctctttgttcattttaaaaatatacaacatttgattgat 408  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  4613048 acgcgtgggttcacgcggtaaaaactttgattttgttcatttatttatcaattatttctttctttttgttcatcttaaaaatatacaacatttgattgat 4612949  T
Q  409 atgcaggggtnnnnnnnntttagttatatctccgaacttaaccagagattttaagttcaaacttaactttgagaatacatcaatattaaattttttgaca 508  Q
    ||||||||||        ||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||| ||||| |||||||||    
T  4612948 atgcaggggtaaaaaaaatttagatatatctccgaacttaacctgagattctaagttcaaacttaactttgagaatacatgaatgttaaactttttgaca 4612849  T
Q  509 taattttaccaacatattgtgattcagtttgatttgtaagattaatctctattgttgtgtgtagaggatattagattcac------attttttatattaa 602  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||  |||||||||||| |||||      | |  |||||||||    
T  4612848 taattttaccaacatattgtggttcagtttgatttgtaagactaatctctattattgtgtacagaggatattaggttcacacaaaaaatagttatattaa 4612749  T
Q  603 aacacatttcatgtcacttgcaatgttagttgt 635  Q
    | |||||||||||||||||||||||||||||||    
T  4612748 atcacatttcatgtcacttgcaatgttagttgt 4612716  T

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