View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14223_low_4 (Length: 579)

Name: NF14223_low_4
Description: NF14223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14223_low_4
NF14223_low_4
[»] chr5 (10 HSPs)
chr5 (17-388)||(8551738-8552101)
chr5 (432-570)||(8551319-8551457)
chr5 (389-462)||(11757074-11757147)
chr5 (389-459)||(1657984-1658054)
chr5 (388-459)||(34980980-34981051)
chr5 (389-459)||(14245091-14245161)
chr5 (401-459)||(42681451-42681509)
chr5 (398-459)||(10204579-10204640)
chr5 (398-459)||(13634714-13634775)
chr5 (389-457)||(11436944-11437012)
[»] chr3 (3 HSPs)
chr3 (388-459)||(34641160-34641231)
chr3 (388-459)||(24253892-24253963)
chr3 (398-459)||(42772047-42772108)
[»] chr8 (4 HSPs)
chr8 (389-459)||(12022314-12022384)
chr8 (388-469)||(43732857-43732938)
chr8 (391-456)||(31543078-31543143)
chr8 (388-459)||(12022145-12022217)
[»] chr4 (10 HSPs)
chr4 (393-459)||(17182660-17182726)
chr4 (388-459)||(54576330-54576401)
chr4 (388-459)||(37761634-37761705)
chr4 (389-459)||(37711294-37711364)
chr4 (398-459)||(47846236-47846297)
chr4 (393-459)||(7977672-7977738)
chr4 (389-447)||(21694905-21694963)
chr4 (389-459)||(54935240-54935310)
chr4 (398-459)||(46007881-46007942)
chr4 (398-459)||(47846443-47846504)
[»] chr1 (10 HSPs)
chr1 (388-458)||(35512967-35513037)
chr1 (398-459)||(35927817-35927878)
chr1 (389-459)||(12234181-12234251)
chr1 (389-459)||(30010503-30010573)
chr1 (389-459)||(40094936-40095006)
chr1 (390-455)||(2859104-2859169)
chr1 (390-459)||(12234013-12234082)
chr1 (390-459)||(38510066-38510135)
chr1 (388-459)||(1085492-1085564)
chr1 (388-459)||(20607386-20607458)
[»] chr7 (9 HSPs)
chr7 (388-459)||(48881561-48881632)
chr7 (391-459)||(36267556-36267624)
chr7 (390-459)||(39856037-39856106)
chr7 (393-457)||(33519053-33519117)
chr7 (388-459)||(33519218-33519289)
chr7 (389-459)||(30592256-30592326)
chr7 (393-459)||(37925844-37925910)
chr7 (398-459)||(36267733-36267794)
chr7 (419-459)||(47391057-47391097)
[»] scaffold0007 (1 HSPs)
scaffold0007 (388-458)||(242386-242456)
[»] chr2 (7 HSPs)
chr2 (389-459)||(23748266-23748336)
chr2 (393-459)||(31061362-31061428)
chr2 (390-459)||(36347713-36347782)
chr2 (389-459)||(31795772-31795842)
chr2 (389-459)||(40022544-40022614)
chr2 (393-459)||(45257310-45257376)
chr2 (398-455)||(31928229-31928286)
[»] scaffold0012 (1 HSPs)
scaffold0012 (388-458)||(184777-184847)
[»] chr6 (5 HSPs)
chr6 (389-459)||(4097684-4097754)
chr6 (398-459)||(14515651-14515712)
chr6 (401-454)||(23091142-23091195)
chr6 (390-459)||(30487477-30487546)
chr6 (394-459)||(31849113-31849178)
[»] scaffold0067 (1 HSPs)
scaffold0067 (390-459)||(39362-39431)


Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 17 - 388
Target Start/End: Complemental strand, 8552101 - 8551738
Alignment:
Q  17 tgaaccaacatcgaaaatagttaccacttacaacatctactatagtcattattatttgcatgtcctcctctcttagcttagcttatctatcagtatgaat 116  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     ||||| |||||||||    
T  8552101 tgaaccaacatcgaaaatagttaccacttacaacatctaatatagtcattattatttgcatgtcctcctctcttagctta-----tctatgagtatgaat 8552007  T
Q  117 gaataacgaatcaatggtgagtgaatcaaatttggatccggattatcgaccgtcggaaaatggtgcaatagcaaatatattattaaatattgatcaaaat 216  Q
    ||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8552006 gaataacgaatcaatggtga----atcaaatttggatccggattatcgaccgtcggaaaatggtgcaatagcaaatatatcattaaatattgatcaaaat 8551911  T
Q  217 tggatcattgagattcatctatagttactatttgatcccatgaatcgatttccatgagtattgattcatgtcatgttataaattttaaaatgattgttat 316  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8551910 tggatgattgagattcatctatagttactatttgatcccatgaatcgatttccatgagtattgattcatgtcatgttataaatttaaaaatgattgttat 8551811  T
Q  317 tcttgtaaaaacattttccct-cnnnnnnnnnnntcttgtaagaatatttataaattaactttattttaagca 388  Q
    ||| |||||||||||||||||             |||||||| ||||||||||||||||||||||||||||||    
T  8551810 tctagtaaaaacattttccctaaaaaaaaacaattcttgtaaaaatatttataaattaactttattttaagca 8551738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 432 - 570
Target Start/End: Complemental strand, 8551457 - 8551319
Alignment:
Q  432 ccctattaaaccctccatccaaacacacactactacttcataaatatacaatcattgggcttaacacataattgctacattgggcttgctaaatttcgca 531  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8551457 ccctattaaaccctctatccaaacacaccctactacttcataaatatacaatcattgggcttaacacataattgctacattgggcttgctaaatttcgca 8551358  T
Q  532 gacaaacctttaatatgagagatttacttttcccaccct 570  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  8551357 gacaaacctttaatatgagaaatttacttttcccaccct 8551319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 389 - 462
Target Start/End: Original strand, 11757074 - 11757147
Alignment:
Q  389 tgtccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacacact 462  Q
    |||||||| ||||||||  |||| ||| ||||||| ||| ||||||| ||||||||||||||||||||||||||    
T  11757074 tgtccgtaatttaaaaatgaaatctaaaccctcccctcccttcccctcttaaaccctccatccaaacacacact 11757147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 459
Target Start/End: Original strand, 1657984 - 1658054
Alignment:
Q  389 tgtccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    |||||||| ||||||||  ||| |||| ||||||| ||| |||||||  ||||||||||||||||||||||    
T  1657984 tgtccgtaatttaaaaatgaaaagtaaaccctcccctcccttcccctcctaaaccctccatccaaacacac 1658054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 459
Target Start/End: Original strand, 34980980 - 34981051
Alignment:
Q  388 atgtccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    |||||| || ||||||||| ||| ||||| |||||| ||| ||||||| |||||||||||||  ||||||||    
T  34980980 atgtccataatttaaaaaagaaaagtaagtcctcccctcccttcccctcttaaaccctccattaaaacacac 34981051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 459
Target Start/End: Complemental strand, 14245161 - 14245091
Alignment:
Q  389 tgtccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    |||||||| ||||||||| ||| ||||  |||||| ||| |||||||  ||||||||| ||||||||||||    
T  14245161 tgtccgtaatttaaaaaagaaaagtaaatcctcccctcccttcccctcctaaaccctcaatccaaacacac 14245091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 459
Target Start/End: Complemental strand, 42681509 - 42681451
Alignment:
Q  401 aaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    |||||| ||| ||||  |||||| ||||||||||| |||||||||| ||||||||||||    
T  42681509 aaaaaaaaaaagtaaatcctcccctcctttcccctcttaaaccctcaatccaaacacac 42681451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 459
Target Start/End: Complemental strand, 10204640 - 10204579
Alignment:
Q  398 tttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    ||||||||||||| || ||||||| | ||| |||||||  ||||||||| ||||||||||||    
T  10204640 tttaaaaaataaaagtgagccctcacctcccttcccctcctaaaccctcgatccaaacacac 10204579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 459
Target Start/End: Complemental strand, 13634775 - 13634714
Alignment:
Q  398 tttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    ||||||||| ||| |||| ||||||| ||| |||||||  ||||||||| ||||||||||||    
T  13634775 tttaaaaaagaaaagtaaaccctcccctcccttcccctcctaaaccctcaatccaaacacac 13634714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 457
Target Start/End: Complemental strand, 11437012 - 11436944
Alignment:
Q  389 tgtccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacac 457  Q
    |||||||| |||||||||  || |||||||||||  ||| |||||||  ||||||||| ||||||||||    
T  11437012 tgtccgtaatttaaaaaaggaaagtaagccctcctctcccttcccctcctaaaccctcaatccaaacac 11436944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 388 - 459
Target Start/End: Original strand, 34641160 - 34641231
Alignment:
Q  388 atgtccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    ||||||||| ||||||||| ||| |||||||||||| ||| |||||||  ||||||||||||||||||||||    
T  34641160 atgtccgtaatttaaaaaagaaaagtaagccctcccctcccttcccctcctaaaccctccatccaaacacac 34641231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 459
Target Start/End: Original strand, 24253892 - 24253963
Alignment:
Q  388 atgtccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    ||||||||| ||||||||| ||| ||||  ||| || ||| |||||||  ||||||||||||||||||||||    
T  24253892 atgtccgtaatttaaaaaagaaaagtaaatccttccctcccttccccttctaaaccctccatccaaacacac 24253963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 459
Target Start/End: Complemental strand, 42772108 - 42772047
Alignment:
Q  398 tttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    ||||||||||||| || || |||||| ||| ||||||| ||||||| || ||||||||||||    
T  42772108 tttaaaaaataaaagtgagtcctcccctcccttcccctcttaaaccttcaatccaaacacac 42772047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 389 - 459
Target Start/End: Original strand, 12022314 - 12022384
Alignment:
Q  389 tgtccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    |||||||| ||||||||||||| || ||||||||| |||||||||||  ||||||||| ||||||||||||    
T  12022314 tgtccgtaatttaaaaaataaaagtgagccctcccctcctttcccctcctaaaccctcaatccaaacacac 12022384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 388 - 469
Target Start/End: Original strand, 43732857 - 43732938
Alignment:
Q  388 atgtccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacacactactactt 469  Q
    ||||||||| ||||||||| ||| |||| ||||||| ||| |||||||  |||||||||||||||||||||| ||| |||||    
T  43732857 atgtccgtaatttaaaaaagaaaagtaaaccctcccctcccttcccctcctaaaccctccatccaaacacaccctaatactt 43732938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 391 - 456
Target Start/End: Complemental strand, 31543143 - 31543078
Alignment:
Q  391 tccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaaca 456  Q
    |||||| ||||||||  ||| |||| ||||||| ||| ||||||| ||||||||||||||||||||    
T  31543143 tccgtaatttaaaaatgaaaagtaaaccctcccctcccttcccctcttaaaccctccatccaaaca 31543078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 459
Target Start/End: Complemental strand, 12022217 - 12022145
Alignment:
Q  388 atgtccgtagtttaaaaaataaatgtaagccctcccttcctttcccc-tattaaaccctccatccaaacacac 459  Q
    |||| |||| ||||||||| ||| |||||||||||| ||| |||||| | | ||||||||||||| |||||||    
T  12022217 atgttcgtaatttaaaaaagaaaagtaagccctcccctcccttccccttctcaaaccctccatcctaacacac 12022145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 393 - 459
Target Start/End: Original strand, 17182660 - 17182726
Alignment:
Q  393 cgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    |||| ||||||||||||| ||||| ||||||||||||||||||  ||||||||| ||||||||||||    
T  17182660 cgtaatttaaaaaataaaagtaagtcctcccttcctttcccctcataaaccctcaatccaaacacac 17182726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 388 - 459
Target Start/End: Complemental strand, 54576401 - 54576330
Alignment:
Q  388 atgtccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    ||||||||| | ||||||| ||| |||||||||||| ||| |||||||  ||||||||||||||||||||||    
T  54576401 atgtccgtaatctaaaaaagaaaagtaagccctcccctcccttccccttctaaaccctccatccaaacacac 54576330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 388 - 459
Target Start/End: Original strand, 37761634 - 37761705
Alignment:
Q  388 atgtccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    |||||| || ||||||||| ||| | |||||||||| ||| ||||||| ||||| |||||||||||||||||    
T  37761634 atgtccataatttaaaaaagaaaaggaagccctcccctcccttccccttttaaatcctccatccaaacacac 37761705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 459
Target Start/End: Original strand, 37711294 - 37711364
Alignment:
Q  389 tgtccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    |||||||| ||||||||  |||| ||| ||||||| ||| |||||||  ||||||||||||||||||||||    
T  37711294 tgtccgtaatttaaaaatgaaatctaaaccctcccctcccttcccctcctaaaccctccatccaaacacac 37711364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 398 - 459
Target Start/End: Original strand, 47846236 - 47846297
Alignment:
Q  398 tttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    ||||||||||||| |||| ||||||| ||| ||| ||| |||||||||| ||||||||||||    
T  47846236 tttaaaaaataaaagtaaaccctcccatcccttctcctcttaaaccctcaatccaaacacac 47846297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 393 - 459
Target Start/End: Original strand, 7977672 - 7977738
Alignment:
Q  393 cgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    |||| |||||||||||||  | | ||||||| |||||||||||  ||||||||| ||||||||||||    
T  7977672 cgtaatttaaaaaataaaattgaaccctcccctcctttcccctcataaaccctcaatccaaacacac 7977738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 447
Target Start/End: Complemental strand, 21694963 - 21694905
Alignment:
Q  389 tgtccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctcc 447  Q
    |||||||| ||||||||| ||| |||||||||||| ||| |||||||  ||||||||||    
T  21694963 tgtccgtaatttaaaaaagaaaagtaagccctcccgtcccttcccctcctaaaccctcc 21694905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 459
Target Start/End: Original strand, 54935240 - 54935310
Alignment:
Q  389 tgtccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    |||||||| ||||||||  |||  ||| ||||||| ||| |||||||  ||||||||||||||||||||||    
T  54935240 tgtccgtaatttaaaaatgaaaaataaaccctcccctcccttcccctcctaaaccctccatccaaacacac 54935310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 459
Target Start/End: Original strand, 46007881 - 46007942
Alignment:
Q  398 tttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    ||||||||| ||| |||| ||||||| ||| |||||||  ||||||||| ||||||||||||    
T  46007881 tttaaaaaagaaaagtaaaccctcccctcccttcccctcctaaaccctcaatccaaacacac 46007942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 459
Target Start/End: Original strand, 47846443 - 47846504
Alignment:
Q  398 tttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    ||||||||||||| |||| || ||| |||| ||| ||| |||||||||| ||||||||||||    
T  47846443 tttaaaaaataaaagtaaaccttcctttcccttctcctcttaaaccctcaatccaaacacac 47846504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 388 - 458
Target Start/End: Original strand, 35512967 - 35513037
Alignment:
Q  388 atgtccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacaca 458  Q
    |||||| || ||||||||||||| |||||||||||| ||| |||||||  |||||||||||||||||||||    
T  35512967 atgtccataatttaaaaaataaaagtaagccctcccctcccttcccctcctaaaccctccatccaaacaca 35513037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 398 - 459
Target Start/End: Complemental strand, 35927878 - 35927817
Alignment:
Q  398 tttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    |||||||||||||||| ||||||||| ||| |||||||  |||| |||| ||||||||||||    
T  35927878 tttaaaaaataaatgtgagccctcccctccattcccctcctaaaacctcaatccaaacacac 35927817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 459
Target Start/End: Original strand, 12234181 - 12234251
Alignment:
Q  389 tgtccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    |||||||| ||||||||  |||  ||| ||||||| ||| |||||||  ||||||||||||||||||||||    
T  12234181 tgtccgtaatttaaaaatgaaaactaaaccctcccctcccttcccctcctaaaccctccatccaaacacac 12234251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 459
Target Start/End: Original strand, 30010503 - 30010573
Alignment:
Q  389 tgtccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    |||||||| ||| ||||  ||| |||| ||||||| ||| |||||||  ||||||||||||||||||||||    
T  30010503 tgtccgtaatttcaaaatgaaaagtaaaccctcccctcccttccccttctaaaccctccatccaaacacac 30010573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 459
Target Start/End: Complemental strand, 40095006 - 40094936
Alignment:
Q  389 tgtccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    |||||||| ||||||||  ||| |||| ||||||| | | |||||||  ||||||||||||||||||||||    
T  40095006 tgtccgtaatttaaaaatgaaaagtaaaccctccccttccttcccctcctaaaccctccatccaaacacac 40094936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 455
Target Start/End: Original strand, 2859104 - 2859169
Alignment:
Q  390 gtccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaac 455  Q
    ||||||| ||||||||||||| |||| ||||||| ||| |||||||  |||||| || ||||||||    
T  2859104 gtccgtaatttaaaaaataaaagtaaaccctcccctcccttcccctcctaaaccttcaatccaaac 2859169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 459
Target Start/End: Complemental strand, 12234082 - 12234013
Alignment:
Q  390 gtccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    ||||||| ||||||||| |||  |||||||| || ||| |||||||  ||||||||| ||||||||||||    
T  12234082 gtccgtaatttaaaaaagaaaattaagccctaccctcccttcccctcctaaaccctcaatccaaacacac 12234013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 459
Target Start/End: Original strand, 38510066 - 38510135
Alignment:
Q  390 gtccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    ||||||||||||||||| |||  ||| ||||||| ||| |||||||  ||||||||  ||||||||||||    
T  38510066 gtccgtagtttaaaaaagaaaactaaaccctcccctcccttcccctcctaaacccttaatccaaacacac 38510135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 459
Target Start/End: Complemental strand, 1085564 - 1085492
Alignment:
Q  388 atgtccgtagtttaaaaaat-aaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    ||||||||| |||||||||  ||| ||||| |||||| ||| | |||||  ||||||||||||||||||||||    
T  1085564 atgtccgtaatttaaaaaaggaaaagtaagtcctcccctccatccccctcctaaaccctccatccaaacacac 1085492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 459
Target Start/End: Original strand, 20607386 - 20607458
Alignment:
Q  388 atgtccgtagtttaaaaaataaat-gtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    |||||| || || |||||| |||| |||| ||||||| ||| |||||||  ||||||||||||||||||||||    
T  20607386 atgtccataattaaaaaaaaaaatagtaaaccctcccctcccttcccctcctaaaccctccatccaaacacac 20607458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 388 - 459
Target Start/End: Complemental strand, 48881632 - 48881561
Alignment:
Q  388 atgtccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    ||||||||| ||||||||| ||| ||||||| |||| ||| |||||||  ||||||||||||||||||||||    
T  48881632 atgtccgtaatttaaaaaagaaaagtaagccatcccctcccttcccctcctaaaccctccatccaaacacac 48881561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 391 - 459
Target Start/End: Complemental strand, 36267624 - 36267556
Alignment:
Q  391 tccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    |||||| ||||||||| |||  ||||||||||| ||| |||||||  ||||||||||||||||||||||    
T  36267624 tccgtaatttaaaaaagaaaactaagccctcccctcccttcccctcctaaaccctccatccaaacacac 36267556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 390 - 459
Target Start/End: Original strand, 39856037 - 39856106
Alignment:
Q  390 gtccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    ||||||| ||||||||| ||| |||| ||||||| ||| |||||||  ||||||||| ||||||||||||    
T  39856037 gtccgtaatttaaaaaagaaaagtaaaccctcccctcccttcccctcctaaaccctcaatccaaacacac 39856106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 457
Target Start/End: Complemental strand, 33519117 - 33519053
Alignment:
Q  393 cgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacac 457  Q
    |||| ||||||||||||| || ||||||||| ||| |||||||  |||| |||||||||||||||    
T  33519117 cgtaatttaaaaaataaaagtgagccctcccctcccttcccctcctaaaacctccatccaaacac 33519053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 459
Target Start/End: Original strand, 33519218 - 33519289
Alignment:
Q  388 atgtccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    ||||| ||| |||||| || ||| |||| ||||||| ||| |||||||  ||||||||||||||||||||||    
T  33519218 atgtctgtaatttaaagaagaaaagtaatccctcccctcccttcccctcctaaaccctccatccaaacacac 33519289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 459
Target Start/End: Complemental strand, 30592326 - 30592256
Alignment:
Q  389 tgtccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    |||| ||| ||||||||| ||| |||||||||||||||| || ||||  |||| |||||||||||| ||||    
T  30592326 tgtctgtaatttaaaaaagaaaagtaagccctcccttccctttccctcctaaatcctccatccaaatacac 30592256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 393 - 459
Target Start/End: Complemental strand, 37925910 - 37925844
Alignment:
Q  393 cgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    |||| ||||||||||||| || | ||||||| ||| |||||||  ||||||||| ||||||||||||    
T  37925910 cgtaatttaaaaaataaaagtgaaccctcccctcccttcccctcctaaaccctcaatccaaacacac 37925844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 459
Target Start/End: Original strand, 36267733 - 36267794
Alignment:
Q  398 tttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    |||||||||||||  | ||||||||| ||| |||||||  ||||||||| ||||||||||||    
T  36267733 tttaaaaaataaaaatgagccctcccctcccttcccctcctaaaccctcaatccaaacacac 36267794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 419 - 459
Target Start/End: Original strand, 47391057 - 47391097
Alignment:
Q  419 ctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    ||||| ||| ||||||| |||||||||||||||||||||||    
T  47391057 ctcccctcccttcccctcttaaaccctccatccaaacacac 47391097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 458
Target Start/End: Original strand, 242386 - 242456
Alignment:
Q  388 atgtccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacaca 458  Q
    ||||||||| ||||||||| ||| |||| ||||||| ||| |||||||  |||||| ||||||||||||||    
T  242386 atgtccgtaatttaaaaaagaaaagtaaaccctcccctcccttccccttataaaccatccatccaaacaca 242456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 459
Target Start/End: Original strand, 23748266 - 23748336
Alignment:
Q  389 tgtccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    |||||||||||||||||  ||| || | ||||||| ||| |||||||  ||||||||||||||||||||||    
T  23748266 tgtccgtagtttaaaaatgaaaagtgaaccctcccctcccttcccctcctaaaccctccatccaaacacac 23748336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 459
Target Start/End: Complemental strand, 31061428 - 31061362
Alignment:
Q  393 cgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    |||| ||||||||||||| || ||||||||| |||||||||||  |||||| || ||||||||||||    
T  31061428 cgtaatttaaaaaataaaagtgagccctcccatcctttcccctcctaaaccttcaatccaaacacac 31061362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 390 - 459
Target Start/End: Original strand, 36347713 - 36347782
Alignment:
Q  390 gtccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    ||||||| ||||||||| ||| |||| | ||||||||| |||||||  ||||||||| ||||||||||||    
T  36347713 gtccgtaatttaaaaaagaaaagtaaactctcccttcccttcccctcctaaaccctcaatccaaacacac 36347782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 459
Target Start/End: Complemental strand, 31795842 - 31795772
Alignment:
Q  389 tgtccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    |||||||| ||||||||  ||| ||||| |||||| ||| ||| |||  ||||||||||||||||||||||    
T  31795842 tgtccgtaatttaaaaacgaaaagtaagtcctcccctcccttcacctcataaaccctccatccaaacacac 31795772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 459
Target Start/End: Original strand, 40022544 - 40022614
Alignment:
Q  389 tgtccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    |||| ||| ||||||||  |||||||| ||||||| ||| ||| ||| ||||||||||||||||| |||||    
T  40022544 tgtctgtaatttaaaaatgaaatgtaaaccctcccctcccttctcctcttaaaccctccatccaagcacac 40022614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 393 - 459
Target Start/End: Complemental strand, 45257376 - 45257310
Alignment:
Q  393 cgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    |||| |||| |||||||| || || ||||||||||||||||||  ||||| ||| ||||||||||||    
T  45257376 cgtaatttataaaataaaagtgagtcctcccttcctttcccctcctaaactctcaatccaaacacac 45257310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 455
Target Start/End: Original strand, 31928229 - 31928286
Alignment:
Q  398 tttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaac 455  Q
    |||||||| |||| || ||||||||||||| |||||||  ||||||||| ||||||||    
T  31928229 tttaaaaattaaaagtgagccctcccttcccttcccctcctaaaccctcgatccaaac 31928286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 458
Target Start/End: Original strand, 184777 - 184847
Alignment:
Q  388 atgtccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacaca 458  Q
    |||||| || ||||||||| ||  |||| ||||||||||| || ||||  |||||||||||||||||||||    
T  184777 atgtccataatttaaaaaagaatagtaaaccctcccttccctttccctcctaaaccctccatccaaacaca 184847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 459
Target Start/End: Original strand, 4097684 - 4097754
Alignment:
Q  389 tgtccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    |||||||| ||||||||| ||| || | |||| || ||| ||||||| |||||||||| ||||||||||||    
T  4097684 tgtccgtaatttaaaaaagaaaagtgaacccttccctcccttcccctcttaaaccctcaatccaaacacac 4097754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 459
Target Start/End: Original strand, 14515651 - 14515712
Alignment:
Q  398 tttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    ||||||||  |||| ||| ||||||||| | |||||||  ||||||||||||||||||||||    
T  14515651 tttaaaaatgaaatctaaaccctccctttccttcccctcctaaaccctccatccaaacacac 14515712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 454
Target Start/End: Original strand, 23091142 - 23091195
Alignment:
Q  401 aaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaa 454  Q
    |||||| ||| |||||||||||| ||| |||||||  |||||||||||||||||    
T  23091142 aaaaaagaaaagtaagccctcccctcccttcccctcctaaaccctccatccaaa 23091195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 459
Target Start/End: Original strand, 30487477 - 30487546
Alignment:
Q  390 gtccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    |||||||||||||||||||||  ||| ||||||  ||| |||||||  ||||||||| ||| ||||||||    
T  30487477 gtccgtagtttaaaaaataaaactaaaccctccactcccttcccctcctaaaccctcaatcgaaacacac 30487546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 459
Target Start/End: Complemental strand, 31849178 - 31849113
Alignment:
Q  394 gtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    ||||||||||||| |||  ||| ||||||| ||| ||||||| |||||||||| |||| |||||||    
T  31849178 gtagtttaaaaaagaaaactaaaccctcccctcccttcccctcttaaaccctcaatcctaacacac 31849113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 459
Target Start/End: Original strand, 39362 - 39431
Alignment:
Q  390 gtccgtagtttaaaaaataaatgtaagccctcccttcctttcccctattaaaccctccatccaaacacac 459  Q
    ||||||| ||||||||| ||| |||| ||||||| ||| || ||||  ||||||||| ||||||||||||    
T  39362 gtccgtaatttaaaaaagaaaagtaaaccctcccctccctttcccttctaaaccctcaatccaaacacac 39431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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