View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14223_low_6 (Length: 516)

Name: NF14223_low_6
Description: NF14223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14223_low_6
NF14223_low_6
[»] scaffold0119 (2 HSPs)
scaffold0119 (1-380)||(22470-22845)
scaffold0119 (457-500)||(22921-22964)
[»] chr2 (5 HSPs)
chr2 (1-380)||(1278246-1278621)
chr2 (457-500)||(1278127-1278170)
chr2 (443-492)||(31663481-31663530)
chr2 (441-478)||(34242397-34242434)
chr2 (444-472)||(27269184-27269212)
[»] chr5 (3 HSPs)
chr5 (441-500)||(14576007-14576066)
chr5 (441-479)||(30721406-30721444)
chr5 (441-474)||(1860238-1860271)
[»] chr4 (3 HSPs)
chr4 (441-500)||(38354272-38354331)
chr4 (441-491)||(41236099-41236149)
chr4 (441-497)||(966694-966750)
[»] chr8 (1 HSPs)
chr8 (444-478)||(36434683-36434717)
[»] chr7 (1 HSPs)
chr7 (443-499)||(43951962-43952018)
[»] chr1 (1 HSPs)
chr1 (444-500)||(15279088-15279144)


Alignment Details
Target: scaffold0119 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 22470 - 22845
Alignment:
Q  1 attagttaatctcaatccttgatttgagatcggacagtccaaatcaaaatccaagatttaaaattgggggatataagatgtgtttgtattggaatggaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  22470 attagttaatctcaatccttgatttgagatcggacagtccaaatcaaaatccaagatttaaaatt-------ataagatgtgtttgtattggaatggaga 22562  T
Q  101 gatgaaaaatgaaagaaatagagataagttttgagacatacatggtggtgcgcgagcgaagagaggttgca-attggtggtagtggtgttgtttcgttgt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  | ||| | |||||| ||||||||||    
T  22563 gatgaaaaatgaaagaaatagagataagttttgagacatacatggtggtgcgcgagcgaagagaggttgcagagagttggaattggtgt-gtttcgttgt 22661  T
Q  200 ggtgctattttgcagaatcgtaatttggtatcaactcaactatagtctctctcacctattctattcgagttcgatccggtttctctatttcgggtcaaac 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||    
T  22662 ggtgctattttgcagaatcgtaatttggtatcaactcaactatagtctctctcccttattctattcgggttcgatccggtttctctatttcgggtcaaac 22761  T
Q  300 catcctacttcttcatttctaaatatttttaaagagta---ataaacaaatggatagtgttaacgtgtacccttaaggcaaccc 380  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||||||| ||||||||||||||||||||||||||||||    
T  22762 catcctacttcttcatttctaaatatttttaaagagtactgataaacaaatgggtagtgttaacgtgtacccttaaggcaaccc 22845  T

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Target: scaffold0119; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 457 - 500
Target Start/End: Original strand, 22921 - 22964
Alignment:
Q  457 caataaattatttatatatttgtcatattaacttgtgtcttaag 500  Q
    |||||||||||||||||||||| |||||||| ||||||||||||    
T  22921 caataaattatttatatatttgccatattaatttgtgtcttaag 22964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 1278621 - 1278246
Alignment:
Q  1 attagttaatctcaatccttgatttgagatcggacagtccaaatcaaaatccaagatttaaaattgggggatataagatgtgtttgtattggaatggaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  1278621 attagttaatctcaatccttgatttgagatcggacagtccaaatcaaaatccaagatttaaaatt-------ataagatgtgtttgtattggaatggaga 1278529  T
Q  101 gatgaaaaatgaaagaaatagagataagttttgagacatacatggtggtgcgcgagcgaagagaggttgca-attggtggtagtggtgttgtttcgttgt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  | ||| | |||||| ||||||||||    
T  1278528 gatgaaaaatgaaagaaatagagataagttttgagacatacatggtggtgcgcgagcgaagagaggttgcagagagttggaattggtgt-gtttcgttgt 1278430  T
Q  200 ggtgctattttgcagaatcgtaatttggtatcaactcaactatagtctctctcacctattctattcgagttcgatccggtttctctatttcgggtcaaac 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||    
T  1278429 ggtgctattttgcagaatcgtaatttggtatcaactcaactatagtctctctcccttattctattcgggttcgatccggtttctctatttcgggtcaaac 1278330  T
Q  300 catcctacttcttcatttctaaatatttttaaagagta---ataaacaaatggatagtgttaacgtgtacccttaaggcaaccc 380  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||||||| ||||||||||||||||||||||||||||||    
T  1278329 catcctacttcttcatttctaaatatttttaaagagtactgataaacaaatgggtagtgttaacgtgtacccttaaggcaaccc 1278246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 457 - 500
Target Start/End: Complemental strand, 1278170 - 1278127
Alignment:
Q  457 caataaattatttatatatttgtcatattaacttgtgtcttaag 500  Q
    |||||||||||||||||||||| |||||||| ||||||||||||    
T  1278170 caataaattatttatatatttgccatattaatttgtgtcttaag 1278127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 492
Target Start/End: Original strand, 31663481 - 31663530
Alignment:
Q  443 taatgcacacatttcaataaattatttatatatttgtcatattaacttgt 492  Q
    ||||||||||||| ||||||| |||||||||||||||   ||||||||||    
T  31663481 taatgcacacattccaataaactatttatatatttgtttaattaacttgt 31663530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 478
Target Start/End: Complemental strand, 34242434 - 34242397
Alignment:
Q  441 tgtaatgcacacatttcaataaattatttatatatttg 478  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  34242434 tgtaatgcatacattccaataaattatttatatatttg 34242397  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 472
Target Start/End: Original strand, 27269184 - 27269212
Alignment:
Q  444 aatgcacacatttcaataaattatttata 472  Q
    |||||||||||||||||||||||||||||    
T  27269184 aatgcacacatttcaataaattatttata 27269212  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 500
Target Start/End: Original strand, 14576007 - 14576066
Alignment:
Q  441 tgtaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaag 500  Q
    ||||||||||||||||| ||||| ||||| |||||||  | ||||||||| |||||||||    
T  14576007 tgtaatgcacacatttcgataaactatttctatattttacttattaacttatgtcttaag 14576066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 479
Target Start/End: Complemental strand, 30721444 - 30721406
Alignment:
Q  441 tgtaatgcacacatttcaataaattatttatatatttgt 479  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  30721444 tgtaatgcacacatttcaataaactatttctatatttgt 30721406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 474
Target Start/End: Original strand, 1860238 - 1860271
Alignment:
Q  441 tgtaatgcacacatttcaataaattatttatata 474  Q
    ||||||||||||||||||||||||||||| ||||    
T  1860238 tgtaatgcacacatttcaataaattatttttata 1860271  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 500
Target Start/End: Complemental strand, 38354331 - 38354272
Alignment:
Q  441 tgtaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaag 500  Q
    ||||||||| ||||||||||||||||||| ||||||||    |||||||||| |||||||    
T  38354331 tgtaatgcatacatttcaataaattatttctatatttgattcattaacttgtatcttaag 38354272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 491
Target Start/End: Original strand, 41236099 - 41236149
Alignment:
Q  441 tgtaatgcacacatttcaataaattatttatatatttgtcatattaacttg 491  Q
    |||||||||||||||| |||||||||||| ||||||||   ||||||||||    
T  41236099 tgtaatgcacacattttaataaattatttctatatttgatttattaacttg 41236149  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 497
Target Start/End: Complemental strand, 966750 - 966694
Alignment:
Q  441 tgtaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtctt 497  Q
    ||||||| ||||||||||||||| ||||| ||||||||    |||||||||||||||    
T  966750 tgtaatgtacacatttcaataaactatttctatatttgattcattaacttgtgtctt 966694  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 478
Target Start/End: Complemental strand, 36434717 - 36434683
Alignment:
Q  444 aatgcacacatttcaataaattatttatatatttg 478  Q
    |||||||||||||||||||||||||| ||||||||    
T  36434717 aatgcacacatttcaataaattatttttatatttg 36434683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 499
Target Start/End: Original strand, 43951962 - 43952018
Alignment:
Q  443 taatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaa 499  Q
    ||||||||||||| ||||| ||||||| || ||||||| | | ||||||||||||||    
T  43951962 taatgcacacattccaatacattatttctacatttgtcttctaaacttgtgtcttaa 43952018  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 500
Target Start/End: Original strand, 15279088 - 15279144
Alignment:
Q  444 aatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaag 500  Q
    ||||||||||||  |||||||||||| ||||||||    ||||||||||||||||||    
T  15279088 aatgcacacattctaataaattatttctatatttgaatcattaacttgtgtcttaag 15279144  T

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