View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14223_low_7 (Length: 472)

Name: NF14223_low_7
Description: NF14223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14223_low_7
NF14223_low_7
[»] chr8 (11 HSPs)
chr8 (10-283)||(479354-479627)
chr8 (345-456)||(479689-479800)
chr8 (67-269)||(473937-474139)
chr8 (94-268)||(466498-466672)
chr8 (350-442)||(466743-466835)
chr8 (67-151)||(454763-454850)
chr8 (163-259)||(445767-445863)
chr8 (202-268)||(454890-454956)
chr8 (355-435)||(455041-455121)
chr8 (354-398)||(474232-474276)
chr8 (350-449)||(446009-446108)
[»] chr2 (2 HSPs)
chr2 (94-271)||(27493754-27493931)
chr2 (355-440)||(27493536-27493624)


Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 10 - 283
Target Start/End: Original strand, 479354 - 479627
Alignment:
Q  10 aagaatatatataataaatttcttattctcttcacacagcataagcatcgtgtgtaatttggaaagcaaagatgggatgtttagacatggagtactacct 109  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  479354 aagaatatatataataaatttcttcttctcttcacacaacataagcatcgtgtataatttggaaagcaaagatgggatgtttagacatggagtactacct 479453  T
Q  110 tccaataatggctatggtgttgatagagtttatatatgcaggtttgggtattggcacaagaattgtatttttgcagggtttgagccctaggatatttgta 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  479454 tccaataatggctatggtgttgatagagtttatatatgcaggtttgggtattggcacaagaattgtatttttgcagggtttgagccctaggatatttgta 479553  T
Q  210 gtgtaccgtcatgctattgcaaccattcttcttgctcctgttgcttatttttccgggtacttctctttcattgc 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  479554 gtgtaccgtcatgctattgcaaccattcttcttgctcctgttgcttatttttccgggtacttctatttcattgc 479627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 345 - 456
Target Start/End: Original strand, 479689 - 479800
Alignment:
Q  345 gtttcttgataggagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattctctag 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  479689 gtttcttgataggagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattctctag 479788  T
Q  445 taataataatat 456  Q
    ||||||||||||    
T  479789 taataataatat 479800  T

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Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 67 - 269
Target Start/End: Original strand, 473937 - 474139
Alignment:
Q  67 tttggaaagcaaagatgggatgtttagacatggagtactaccttccaataatggctatggtgttgatagagtttatatatgcaggtttgggtattggcac 166  Q
    ||||||||||||||||||||||||||||||||||||| ||  | |||||||||| |||||| |||||| ||||||||||||||||| ||  | ||||||     
T  473937 tttggaaagcaaagatgggatgtttagacatggagtattatatgccaataatggttatggtattgatacagtttatatatgcaggtatgaatcttggcat 474036  T
Q  167 aagaattgtatttttgcagggtttgagccctaggatatttgtagtgtaccgtcatgctattgcaaccattcttcttgctcctgttgcttatttttccggg 266  Q
    |||| |     ||||| ||||| |||| || |   |||||||||| ||||||  |||| ||||||||||| ||||||||||  |||||||||| || |||    
T  474037 aagagtcacccttttggagggtatgagtcccaacgtatttgtagtataccgtagtgcttttgcaaccatttttcttgctcccattgcttatttctctggg 474136  T
Q  267 tac 269  Q
    |||    
T  474137 tac 474139  T

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Target: chr8; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 94 - 268
Target Start/End: Original strand, 466498 - 466672
Alignment:
Q  94 acatggagtactaccttccaataatggctatggtgttgatagagtttatatatgcaggtttgggtattggcacaagaattgtatttttgcagggtttgag 193  Q
    |||||||||||||||| |||||||| | |||| |||||||| |||| |||| |||||||  |  | ||||||||||||| | | ||||| ||||| ||||    
T  466498 acatggagtactacctgccaataatagttatgttgttgatacagttaatatttgcaggtcagactcttggcacaagaatggcacttttggagggtatgag 466597  T
Q  194 ccctaggatatttgtagtgtaccgtcatgctattgcaaccattcttcttgctcctgttgcttatttttccgggta 268  Q
     || |||||||||||||| ||||||  |||| ||||||||||| ||||||||||  | |||||||| || |||||    
T  466598 tccaaggatatttgtagtataccgtagtgcttttgcaaccattgttcttgctcccctcgcttatttatcagggta 466672  T

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Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 350 - 442
Target Start/End: Original strand, 466743 - 466835
Alignment:
Q  350 ttgataggagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattctct 442  Q
    |||| |||||||| |||||||| |||||||| ||||||||||||||||| ||| | ||| | ||||||||||||||||| |||||||||||||    
T  466743 ttgacaggagaaactctggctcatattccttgaatttaaggagtttttccttgattttcatgacctcactaattgggtttgtttccattctct 466835  T

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Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 67 - 151
Target Start/End: Original strand, 454763 - 454850
Alignment:
Q  67 tttggaaagcaaagatgggat---gtttagacatggagtactaccttccaataatggctatggtgttgatagagtttatatatgcagg 151  Q
    ||||||||| |||||||||||   |||||||||||||||||||||||||| || |||| |||||||||| | ||||||||||| ||||    
T  454763 tttggaaagtaaagatgggatattgtttagacatggagtactaccttccagtattggccatggtgttgacacagtttatatattcagg 454850  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 163 - 259
Target Start/End: Original strand, 445767 - 445863
Alignment:
Q  163 gcacaagaattgtatttttgcagggtttgagccctaggatatttgtagtgtaccgtcatgctattgcaaccattcttcttgctcctgttgcttattt 259  Q
    |||||||||||| | ||||| ||||| |||||||   | |||||||| |||||||| ||||| ||||||||||| ||||||||||  ||||||||||    
T  445767 gcacaagaattgcacttttggagggtatgagcccggcggtatttgtaatgtaccgtaatgcttttgcaaccatttttcttgctccaattgcttattt 445863  T

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Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 202 - 268
Target Start/End: Original strand, 454890 - 454956
Alignment:
Q  202 tatttgtagtgtaccgtcatgctattgcaaccattcttcttgctcctgttgcttatttttccgggta 268  Q
    ||||| |||| |||||||||||| ||||||||||||||||||||||  |||||||||| || |||||    
T  454890 tatttatagtttaccgtcatgcttttgcaaccattcttcttgctcccattgcttatttatctgggta 454956  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 435
Target Start/End: Original strand, 455041 - 455121
Alignment:
Q  355 aggagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttcc 435  Q
    |||||||| ||| |||||||||||||||||||||  |||||||| | | | ||| | ||||||||||||||||| ||||||    
T  455041 aggagaaactctcgctcttattccttaaatttaacaagtttttcctggattttcatgacctcactaattgggtttgtttcc 455121  T

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Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 474232 - 474276
Alignment:
Q  354 taggagaaattctggctcttattccttaaatttaaggagtttttc 398  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||    
T  474232 taggagaaactctgcctcttattccttaaatttaaggagtttttc 474276  T

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Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 350 - 449
Target Start/End: Original strand, 446009 - 446108
Alignment:
Q  350 ttgataggagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattctctagtaata 449  Q
    |||| |||||||| |||| ||| || |||||||| |||||||||||||| | | ||||| | || ||||||||| |||| |||| |||| ||||||||||    
T  446009 ttgacaggagaaactctgcctcctactccttaaacttaaggagtttttcctggatattcatgacttcactaattaggtttgttttcattttctagtaata 446108  T

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Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 94 - 271
Target Start/End: Complemental strand, 27493931 - 27493754
Alignment:
Q  94 acatggagtactaccttccaataatggctatggtgttgatagagtttatatatgcaggtttgggtattggcacaagaattgtatttttgcagggtttgag 193  Q
    |||||||||||||| | |||||||||| |||| | |||||| |||| |||||| |||| |||  | |||| |||||||||||| ||||| ||||||||||    
T  27493931 acatggagtactacttaccaataatggttatgttattgatacagttaatatattcaggcttgactcttggtacaagaattgtacttttggagggtttgag 27493832  T
Q  194 ccctaggatatttgtagtgtaccgtcatgctattgcaaccattcttcttgctcctgttgcttatttttccgggtactt 271  Q
     || | | |||||||||| || ||  ||||| ||||||||||| |||||||||||||||||||||| || ||||||||    
T  27493831 tccaatggtatttgtagtatatcgctatgcttttgcaaccatttttcttgctcctgttgcttatttatcagggtactt 27493754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 440
Target Start/End: Complemental strand, 27493624 - 27493536
Alignment:
Q  355 aggagaaattctggctctt---attccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattct 440  Q
    ||||||||||||||||| |   ||||||||||||||| ||||||||||| | ||||| | || |||||| ||||||| ||||| |||||    
T  27493624 aggagaaattctggctcctcccattccttaaatttaaagagtttttcttggatattcatcacttcactagttgggtttgtttctattct 27493536  T

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