View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14223_low_8 (Length: 462)
Name: NF14223_low_8
Description: NF14223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14223_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 414; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 13 - 446
Target Start/End: Complemental strand, 44944297 - 44943864
Alignment:
| Q |
13 |
aatatcatggcgtctaatcttcttgctacaacagcaatcacattaagttcacttattggaatttttgctagcagttcatggagttctgatgatacatctt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44944297 |
aatatcatggcgtctaatcttcttgctacaacagcaatcacattaagttcacttattggaatttttgctagcagttcatggagttctgatgatacatctt |
44944198 |
T |
|
| Q |
113 |
ccatacttcaaagtacttcttcaatcaaacgtatttcaattaccatttgcttccttgttgcatttttatgcaatgttcagtctataaggtgctattgtca |
212 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44944197 |
ccatacttcaaagtacttcttcaatcaaacgtatttcgattaccatttgcttccttgttgcatttttatgcaatgttcagtctataaggtgctattgtca |
44944098 |
T |
|
| Q |
213 |
tgtcagttttttaatcaccgcacctacactcagagataaaaaggcatatatggaatatattgctaagacattgaatcgtgctagtcactcttggtccctt |
312 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44944097 |
tgtcagttttttaatcaccgcacctacactccgagataaaaaggcatatatggaatatattgctaagacattgaatcgtgctagtcactcttggtccctt |
44943998 |
T |
|
| Q |
313 |
ggcttgcgagcattttacttatcatttcctctcttcctatggatttatgggcctataccaatgtttacttgttgctgtttgacatctttcagtttgtact |
412 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
44943997 |
ggattgcgagcattttacttatcatttcctctcttcctatggatttatgggcctataccaatgtttgcttgttgctgtttgacatcattcagtttgtact |
44943898 |
T |
|
| Q |
413 |
ttttggatacaacaactagaatcacaagggatct |
446 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
44943897 |
ttttggatacaacaactagaatcacaagggatct |
44943864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 13 - 446
Target Start/End: Complemental strand, 44945954 - 44945518
Alignment:
| Q |
13 |
aatatcatggcgtctaatcttcttgctacaacagcaatcacattaagttcacttattggaatttttgctagcagttcatggagttctgatgatacatc-- |
110 |
Q |
| |
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|||||||||||||||| ||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44945954 |
aatatcatggcgtctactcttctttctacaacagctatcacactaagttcacttattggaatttttgctagcagttcgtggagttctgatgatacatcat |
44945855 |
T |
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| Q |
111 |
-ttccatacttcaaagtacttcttcaatcaaacgtatttcaattaccatttgcttccttgttgcatttttatgcaatgttcagtctataaggtgctattg |
209 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44945854 |
cttccatacttcaaagtacttcttcaatcaaacacatttcgattaccatctgcttccttgttgcatttttatgcaatgttcagtctataagatgctattg |
44945755 |
T |
|
| Q |
210 |
tcatgtcagttttttaatcaccgcacctacactcagagataaaaaggcatatatggaatatattgctaagacattgaatcgtgctagtcactcttggtcc |
309 |
Q |
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||||||||| |||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||| |
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| T |
44945754 |
tcatgtcagctttttaatcaacgcgccaacactcagagataaaaaggcatatatggaatatattgctaagacattgaatcgcgctagttactcctggtcc |
44945655 |
T |
|
| Q |
310 |
cttggcttgcgagcattttacttatcatttcctctcttcctatggatttatgggcctataccaatgtttacttgttgctgtttgacatctttcagtttgt |
409 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
44945654 |
cttggattgcgagcattttacttatcatttcctctcttcctatggatttatgggcctataccaatgtttgcttgttgctgtttgacatcattcagtttgt |
44945555 |
T |
|
| Q |
410 |
actttttggatacaacaactagaatcacaagggatct |
446 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
44945554 |
actttttggatacaacaactagaatcacaagggatct |
44945518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 160 - 446
Target Start/End: Complemental strand, 44940981 - 44940695
Alignment:
| Q |
160 |
tgcttccttgttgcatttttatgcaatgttcagtctataaggtgctattgtcatgtcagttttttaatcaccgcacctacactcagagataaaaaggcat |
259 |
Q |
| |
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|||||||||||||||||| |||| ||| | || |||||||| | |||| ||||| ||||| ||||||| ||||| |||||| | ||||||| | |
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| T |
44940981 |
tgcttccttgttgcatttctatgtaatatgcaatctataagatactatgcacatgtgagtttcttaatcaatacacctgcactcaatggcaaaaaggatt |
44940882 |
T |
|
| Q |
260 |
atatggaatatattgctaagacattgaatcgtgctagtcactcttggtcccttggcttgcgagcattttacttatcatttcctctcttcctatggattta |
359 |
Q |
| |
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||| |||||| |||| || |||||||| |||| ||| | |||||||| ||||| ||| | || || ||| ||| |||| || ||||||||||||| |
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| T |
44940881 |
ttatcgaatatgttgcaaaaacattgaaccgtggaagttattcttggtctcttggtttgagggctttctacacgtcaattccacttgtcctatggattta |
44940782 |
T |
|
| Q |
360 |
tgggcctataccaatgtttacttgttgctgtttgacatctttcagtttgtactttttggatacaacaactagaatcacaagggatct |
446 |
Q |
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|||||| ||||| ||||||| ||||| || || ||||| || | ||||||||| ||||||||||| ||| ||||||||||||||| |
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| T |
44940781 |
tgggcccatacccatgtttatttgttcttgcttcacatcatttattttgtacttcttggatacaaccactcaaatcacaagggatct |
44940695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 44941131 - 44941059
Alignment:
| Q |
13 |
aatatcatggcgtctaatcttcttgctacaacagcaatcacattaagttcacttattggaatttttgctagca |
85 |
Q |
| |
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||||| ||||| |||| ||| || |||||||||||||||||| |||||||||| |||||| ||||||| |||| |
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| T |
44941131 |
aatataatggcatctactctactagctacaacagcaatcacactaagttcactaattggagtttttgcaagca |
44941059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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