View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14223_low_9 (Length: 444)
Name: NF14223_low_9
Description: NF14223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14223_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 25933509 - 25933090
Alignment:
| Q |
1 |
ctctgtatgatggaatttaactatagtgcatactagagtagacatgaaggaaatgagagaaattgtgagaagtg--tgagcttctactccaactctattc |
98 |
Q |
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| T |
25933509 |
ctctgtatgatggaatttaactatagtgcatactagagtagacatgaaggaaatgtgagaaattgtaagaagtggttgagcttctactccaactctgttc |
25933410 |
T |
|
| Q |
99 |
tagtgaacgaattgaatggattttaagacgcgaattgaaatattctcaaaactgtcttggaatttcagttttgacattatcaaagtccatatcttcctct |
198 |
Q |
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| T |
25933409 |
cagtgaaccaactgaatcgattttaagatgtgaattgaaatattctcaaaactgtcttggaatttcagttttgacattatcaaagtccatatcttcctct |
25933310 |
T |
|
| Q |
199 |
ct-nnnnnnngcccatatcttccatttgattcacgtggtgtccgtcgctttctaggaaattcaatttgaactggattttgtgttcatttgatgggagaaa |
297 |
Q |
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| T |
25933309 |
ctaaaaaaaagcccatatcttccatttgattcacgtggtgtccatcactttctaggaaattcaatttgaactgggttttgtgttcatttgatgggagaaa |
25933210 |
T |
|
| Q |
298 |
gaaaaaataaaacagggattcatannnnnnnnnataggtttaaggaattatagcttttgttgttttgggttcatgaatttctagtgattagatcagttgt |
397 |
Q |
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| T |
25933209 |
gaaaaaattaaacatggattcat---cttttttataggtttaaggaattagagcttttgttgttatgggttcatgaatttctggtgattagataagttgt |
25933113 |
T |
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| Q |
398 |
tgttgatggtggtgggggtgtag |
420 |
Q |
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| T |
25933112 |
tgttgatggtagtggaggtgtag |
25933090 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 15647607 - 15647560
Alignment:
| Q |
11 |
tggaatttaactatagtgcatactagagtagacatgaaggaaatgaga |
58 |
Q |
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| T |
15647607 |
tggaattttactttggtgcgtactagagtagacatgaaggaaatgaga |
15647560 |
T |
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