View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14224_high_1 (Length: 455)
Name: NF14224_high_1
Description: NF14224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14224_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 63 - 442
Target Start/End: Complemental strand, 55169319 - 55168941
Alignment:
| Q |
63 |
gctcacggtgagggatgctggcgctctctccgaaaagccgctggtcttctccgttgcggtaagagttgccgtctccggtggatcaactacctccgccccg |
162 |
Q |
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| T |
55169319 |
gctcacggtgagggatgctggcgctctctcccaaaagccgctggtcttctccgttgcggtaagagttgccgtctccggtggatcaactacctacgccccg |
55169220 |
T |
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| Q |
163 |
acctcaaacgtggaaatttcacccaacaagaagatcaactcatcataaaactccacactctcctcggtaacaagtaagctacactatcgttcttgagtat |
262 |
Q |
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| T |
55169219 |
acctcaaacgtggaaatttcacccaacaagaagatcaactcatcataaaactccacactctcctcggtaacaagtaagctacactatcgttcttgagtat |
55169120 |
T |
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| Q |
263 |
ttttagactttaccccaatttgagctttcgtaatttccttgcaactagtcttggatnnnnnnnntatatccaaactagtcacttagatttttatataggg |
362 |
Q |
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| T |
55169119 |
ttttagacttta-cccaatttgatctttcgtaatttccttgcaactagtcttatataaaaaaattatatccaaactagtcacttagatttttatataggg |
55169021 |
T |
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| Q |
363 |
tcgtattcatcctttgttgctcttaactcatatttaacttattagtcaccgctctcagctatctttgtcaatagaaaaga |
442 |
Q |
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| T |
55169020 |
tcgcattaatcctttgttacttttaactcatatttaacttattagtcgccgctctcagctacctctgtcaatagaaaaga |
55168941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 55169355 - 55169319
Alignment:
| Q |
11 |
caaaggagcatggagcaaagaagaagatgagcggctg |
47 |
Q |
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| T |
55169355 |
caaaggagcatggagcaaagaagaagatgagcggctg |
55169319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 240
Target Start/End: Original strand, 27808078 - 27808307
Alignment:
| Q |
11 |
caaaggagcatggagcaaagaagaagatgagcggctgatagcttatattagagctcacggtgagggatgctggcgctctctccgaaaagccgctggtctt |
110 |
Q |
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||||||||| |||| |||||||||||||| | || ||| | |||||||| || || ||||| || || ||| | ||||||| ||||| ||||| | |
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| T |
27808078 |
caaaggagcttggacaaaagaagaagatgatagacttatatcatatattagggcacatggtgaaggttgttggagatctctccctaaagcagctggctta |
27808177 |
T |
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| Q |
111 |
ctccgttgcggtaagagttgccgtctccggtggatcaactacctccgccccgacctcaaacgtggaaatttcacccaacaagaagatcaactcatcataa |
210 |
Q |
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| T |
27808178 |
ctccgatgtggtaaaagttgtcgtctccggtggattaactatctcaggccagaccttaaacgtggtaactttacagaagaagaagatgaactcatcatca |
27808277 |
T |
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| Q |
211 |
aactccacactctcctcggtaacaagtaag |
240 |
Q |
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||||||| | ||| || ||||||||||||| |
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| T |
27808278 |
aactccatagtcttcttggtaacaagtaag |
27808307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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