View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14224_high_6 (Length: 209)
Name: NF14224_high_6
Description: NF14224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14224_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 14 - 192
Target Start/End: Complemental strand, 18418371 - 18418193
Alignment:
| Q |
14 |
aaggccaaagtaggcatagaaagcacaaccacagccacagctacatcacctgttgccaaaatcaatggaagacctgttcttcaaccaacttgtaacagag |
113 |
Q |
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| T |
18418371 |
aaggccaaagtaggcatagaaagcaaaaccacagccacagctacatcacctgttgccaaaatcaatggaagacctgttcttcaaccaacttgtaacagag |
18418272 |
T |
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| Q |
114 |
ttccaaatcttgaaagaagaaattcaatcaagaaattgccaccaaaatcactttctctaccatcatcaccaccacttcc |
192 |
Q |
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| T |
18418271 |
tgccaaatcttgaaagaagaaattcaatcaagaaattaccaccaaaatcactttcactaccatcatcaccaccacttcc |
18418193 |
T |
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Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 64 - 170
Target Start/End: Complemental strand, 26804769 - 26804663
Alignment:
| Q |
64 |
tgttgccaaaatcaatggaagacctgttcttcaaccaacttgtaacagagttccaaatcttgaaagaagaaattcaatcaagaaattgccaccaaaatca |
163 |
Q |
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| T |
26804769 |
tgttgctagaatcaatggaaggccagtacttcaaccaacatgcaaccatgttccaaatcttgaaagaagaaactcaattaagaaatcaacaccaaaatca |
26804670 |
T |
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| Q |
164 |
ctttctc |
170 |
Q |
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| T |
26804669 |
ctttctc |
26804663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 170
Target Start/End: Complemental strand, 32591282 - 32591176
Alignment:
| Q |
64 |
tgttgccaaaatcaatggaagacctgttcttcaaccaacttgtaacagagttccaaatcttgaaagaagaaattcaatcaagaaattgccaccaaaatca |
163 |
Q |
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| T |
32591282 |
tgttgctagaatcaatggaaggccagtacttcaaccaacatgcaaccatgtttcaaatcttgaaagaagaaactcaattaagaaatcaacaccgaaatca |
32591183 |
T |
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| Q |
164 |
ctttctc |
170 |
Q |
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| T |
32591182 |
ctttctc |
32591176 |
T |
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