View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14225_high_10 (Length: 358)
Name: NF14225_high_10
Description: NF14225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14225_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 20 - 343
Target Start/End: Complemental strand, 41978798 - 41978475
Alignment:
| Q |
20 |
atagttactcctagatttgttttagatgttagtcaaatacgtcagtgtgttaaagaactcaattgagtggattttataatttagtaatcagtttccaata |
119 |
Q |
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| T |
41978798 |
atagttactcctagatttgttttagatgttagtcaaatacgtcagtgtgttaaagaactcaattgagtggattttataatttagtaatcagtttccaata |
41978699 |
T |
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| Q |
120 |
ttttcacccatttagaagtcacacattttgtcatccatcatcatatactgaatacggtttatattcagagtctttatgnnnnnnnncacacatatcttta |
219 |
Q |
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| T |
41978698 |
ttttcacccatttagaagtcacacattttgtcatccatcatcatatactgaatacggtatatattcagagtctatattttttttttcacacatatctgta |
41978599 |
T |
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| Q |
220 |
ctaggtttaaaatgcctgaatttaaactccaaagtcatttacaatttataaaatgcatgtatatcatctatactgaaaataaccctaaacaaccatgaag |
319 |
Q |
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| T |
41978598 |
ctaggtttaaaatgcctgaatttaaactccaaagtcatttacaatttataaaatgcatgtatatcatctatactgaaaataaccctaaacaaccatgaag |
41978499 |
T |
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| Q |
320 |
tgttgctcaataaatgggcctttg |
343 |
Q |
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| T |
41978498 |
tgttgctcaataaatgggcctttg |
41978475 |
T |
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